swcgeom 0.17.0__py3-none-any.whl → 0.17.2__py3-none-any.whl

swcgeom/utils/solid_geometry.py

@@ -1,7 +1,5 @@
 """Solid Geometry."""
 
-from typing import List, Tuple
-
 import numpy as np
 import numpy.typing as npt
 
@@ -31,7 +29,7 @@ def find_sphere_line_intersection(
     sphere_radius: float,
     line_point_a: npt.NDArray,
     line_point_b: npt.NDArray,
-) -> List[Tuple[float, npt.NDArray[np.float64]]]:
+) -> list[tuple[float, npt.NDArray[np.float64]]]:
     A = np.array(line_point_a)
     B = np.array(line_point_b)
     C = np.array(sphere_center)

swcgeom/utils/transforms.py

@@ -1,7 +1,5 @@
 """3D geometry transformations."""
 
-from typing import Tuple
-
 import numpy as np
 import numpy.typing as npt
 
@@ -19,11 +17,11 @@ __all__ = [
     "orthographic_projection_simple",
 ]
 
-Vec3f = Tuple[float, float, float]
+Vec3f = tuple[float, float, float]
 
 
 def angle(a: npt.ArrayLike, b: npt.ArrayLike) -> float:
-    """Get the agnle of vectors.
+    """Get the angle of vectors.
 
     Returns
     -------

swcgeom/utils/volumetric_object.py

@@ -16,7 +16,7 @@ computations.
 
 import warnings
 from abc import ABC, abstractmethod
-from typing import Generic, Optional, Tuple, TypeVar
+from typing import Generic, Optional, TypeVar
 
 import numpy as np
 import numpy.typing as npt
@@ -95,7 +95,7 @@ class VolMCObject(VolObject, ABC):
             self.n_samples = n_samples
 
     @abstractmethod
-    def sample(self, n: int) -> Tuple[npt.NDArray[np.float32], float]:
+    def sample(self, n: int) -> tuple[npt.NDArray[np.float32], float]:
         """Sample points.
 
         Parameters
@@ -172,7 +172,7 @@ class VolSDFObject(VolMCObject):
         super().__init__(**kwargs)
         self.sdf = sdf
 
-    def sample(self, n: int) -> Tuple[npt.NDArray[np.float32], float]:
+    def sample(self, n: int) -> tuple[npt.NDArray[np.float32], float]:
         (min_x, min_y, min_z), (max_x, max_y, max_z) = self.sdf.bounding_box()
         samples = np.random.uniform(
             (min_x, min_y, min_z), (max_x, max_y, max_z), size=(n, 3)
@@ -186,17 +186,17 @@ class VolSDFObject(VolMCObject):
     def union(self, obj: VolObject) -> VolObject:
         if isinstance(obj, VolSDFObject):
             return VolSDFUnion(self, obj)
-        return super().union(obj)
+        raise NotImplementedError()
 
     def intersect(self, obj: VolObject) -> VolObject:
         if isinstance(obj, VolSDFObject):
             return VolSDFIntersection(self, obj)
-        return super().intersect(obj)
+        raise NotImplementedError()
 
     def subtract(self, obj: VolObject) -> VolObject:
         if isinstance(obj, VolSDFObject):
             return VolSDFDifference(self, obj)
-        return super().subtract(obj)
+        raise NotImplementedError()
 
 
 T = TypeVar("T", bound=VolSDFObject)
@@ -386,9 +386,7 @@ class VolSphere2Intersection(VolSDFIntersection[VolSphere, VolSphere]):
             return VolSphere.calc_volume(min(r1, r2))
 
         part1 = (np.pi / (12 * d)) * (r1 + r2 - d) ** 2
-        part2 = (
-            d**2 + 2 * d * r1 - 3 * r1**2 + 2 * d * r2 - 3 * r2**2 + 6 * r1 * r2
-        )
+        part2 = d**2 + 2 * d * r1 - 3 * r1**2 + 2 * d * r2 - 3 * r2**2 + 6 * r1 * r2
         return part1 * part2
 
 
@@ -497,7 +495,7 @@ class VolSphereFrustumConeUnion(VolSDFUnion[VolSphere, VolFrustumCone]):
         )
 
 
-def _tp3f(x: npt.NDArray) -> Tuple[float, float, float]:
+def _tp3f(x: npt.NDArray) -> tuple[float, float, float]:
     """Convert to tuple of 3 floats."""
 
     assert len(x) == 3

{swcgeom-0.17.0.dist-info → swcgeom-0.17.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: swcgeom
-Version: 0.17.0
+Version: 0.17.2
 Summary: Neuron geometry library for swc format
 Author-email: yzx9 <yuan.zx@outlook.com>
 License: Apache-2.0
@@ -9,25 +9,25 @@ Keywords: neuronscience,neuron,neuroanatomy,neuron-morphology
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: imagecodecs >=2023.3.16
-Requires-Dist: matplotlib >=3.5.2
-Requires-Dist: numpy >=1.22.3
-Requires-Dist: pandas >=1.4.2
-Requires-Dist: pynrrd >=1.0.0
-Requires-Dist: scipy >=1.9.1
-Requires-Dist: sdflit >=0.2.1
-Requires-Dist: seaborn >=0.12.0
-Requires-Dist: tifffile >=2022.8.12
-Requires-Dist: typing-extensions >=4.4.0
-Requires-Dist: tqdm >=4.46.1
-Requires-Dist: v3d-py-helper >=0.1.0
+Requires-Dist: imagecodecs>=2023.3.16
+Requires-Dist: matplotlib>=3.5.2
+Requires-Dist: numpy>=1.22.3
+Requires-Dist: pandas>=1.4.2
+Requires-Dist: pynrrd>=1.0.0
+Requires-Dist: scipy>=1.9.1
+Requires-Dist: sdflit>=0.2.1
+Requires-Dist: seaborn>=0.12.0
+Requires-Dist: tifffile>=2022.8.12
+Requires-Dist: typing_extensions>=4.4.0
+Requires-Dist: tqdm>=4.46.1
+Requires-Dist: v3d-py-helper==0.1.0
 Provides-Extra: all
-Requires-Dist: beautifulsoup4 >=4.11.1 ; extra == 'all'
-Requires-Dist: certifi >=2023.5.7 ; extra == 'all'
-Requires-Dist: chardet >=5.2.0 ; extra == 'all'
-Requires-Dist: lmdb >=1.4.1 ; extra == 'all'
-Requires-Dist: requests >=2.0.0 ; extra == 'all'
-Requires-Dist: urllib3 >=1.26.0 ; extra == 'all'
+Requires-Dist: beautifulsoup4>=4.11.1; extra == "all"
+Requires-Dist: certifi>=2023.5.7; extra == "all"
+Requires-Dist: chardet>=5.2.0; extra == "all"
+Requires-Dist: lmdb>=1.4.1; extra == "all"
+Requires-Dist: requests>=2.0.0; extra == "all"
+Requires-Dist: urllib3>=1.26.0; extra == "all"
 
 # SWCGEOM
 

swcgeom-0.17.2.dist-info/RECORD

@@ -0,0 +1,67 @@
+swcgeom/__init__.py,sha256=z88Zwcjv-ii7c7dYd9QPg9XrUVorQjtrgGbQCsEnQhc,265
+swcgeom/_version.py,sha256=9PqbWPkwwMgdNmE4GP1v5LyzvjNYATMHB-uIEy0c_aI,413
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+swcgeom/analysis/sholl.py,sha256=uTse3sCCrhpCIY6GNJ0giDp7qCHCImTtWbJE7qY4D-Y,6622
+swcgeom/analysis/trunk.py,sha256=fMHnLDxm2jP_bKBM8ATbTQvBVS5G92ITbgMAm1pIK20,5566
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+swcgeom/analysis/visualization3d.py,sha256=CTUcWBa2cMyDdKimMEtDBmbVzYf3-cTp-6UskPP6Erg,2513
+swcgeom/analysis/volume.py,sha256=y-GVlK8gB7JPS4DpBq1jIjl9Wd-0zryZ9qo8zHGE6_k,4616
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+swcgeom/core/path.py,sha256=Uf6N-vFGut1UxTZ7iiX4btZiWpJCWSRaPbzkVKgXCSo,4484
+swcgeom/core/population.py,sha256=U0r652W-GMEX7UkUxlqUa-oTcSgmYuKRlkoskSonAC4,10458
+swcgeom/core/swc.py,sha256=sq9-Fg5-d8Yxc2-ITu__LzN5k1hxQNkVTdmee1gpGME,6803
+swcgeom/core/tree.py,sha256=VcD0qWZNZW04yqF_mjSBXbZRunTp4jLcvYdL7zfX4ZM,12569
+swcgeom/core/tree_utils.py,sha256=bDz9AvYdv0y_4j1knEuudaVA2tOvevaeRaF7_6smxxs,7611
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+swcgeom/images/__init__.py,sha256=QBP1ZGGo2nWAcV7Krz-vbvW_jN4ChqXrrpoScXcUURs,96
+swcgeom/images/augmentation.py,sha256=DfSaEs57aY50O6IKDNupmLI8fHyOvNVmH8uXtdd45iQ,4167
+swcgeom/images/contrast.py,sha256=ViZVW6XI-l2sLVTODLRLtHinv_7lVgtH-xZmaw1nQLw,2160
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+swcgeom/utils/neuromorpho.py,sha256=HfZx3pqtQrZHklTJhpgaIROUY5ysJTPhYHbvbDxx_Ws,19115
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+swcgeom/utils/renderer.py,sha256=3fjs9L_c6nJ1-pQzGT7meD0-XHZeKeW0WWqBfMx9c1s,4220
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+swcgeom/utils/volumetric_object.py,sha256=213DCz-d99ZwEZJv6SLKb0Nkj9uo5oOBnPsG50Miwz8,15102
+swcgeom-0.17.2.dist-info/LICENSE,sha256=JPtohhZ4XURqoKI0ZqnMYb7dobCOoZR_n5EpnaLTp3E,11344
+swcgeom-0.17.2.dist-info/METADATA,sha256=bgTVJ7LDFnrx2mpT-59qT8m6c2C4sgdVoQIcFS4br38,2308
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+swcgeom-0.17.2.dist-info/top_level.txt,sha256=hmLyUXWS61Gxl07haswFEKKefYPBVJYlUlol8ghNkjY,8
+swcgeom-0.17.2.dist-info/RECORD,,

{swcgeom-0.17.0.dist-info → swcgeom-0.17.2.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: setuptools (75.6.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

swcgeom-0.17.0.dist-info/RECORD

@@ -1,65 +0,0 @@
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-swcgeom/_version.py,sha256=kBQrirg2HABnJUda1U0a6ZmIqeCqRLaPZOws884sTW8,413
-swcgeom/analysis/__init__.py,sha256=NurxIAyjsxjYv9rbzNf65y2sv-iBcGTmLap645hYq9Y,280
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-swcgeom/images/__init__.py,sha256=QBP1ZGGo2nWAcV7Krz-vbvW_jN4ChqXrrpoScXcUURs,96
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-swcgeom/images/contrast.py,sha256=ViZVW6XI-l2sLVTODLRLtHinv_7lVgtH-xZmaw1nQLw,2160
-swcgeom/images/folder.py,sha256=YY9YjF17nDwOQEXhzFe-Dj0zPTcG0WP1-gisscImmYg,6674
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