swcgeom 0.15.0__py3-none-any.whl → 0.17.0__py3-none-any.whl

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Files changed (42) hide show
  1. swcgeom/_version.py +2 -2
  2. swcgeom/analysis/__init__.py +1 -3
  3. swcgeom/analysis/feature_extractor.py +3 -3
  4. swcgeom/analysis/{node_features.py → features.py} +105 -3
  5. swcgeom/analysis/lmeasure.py +821 -0
  6. swcgeom/analysis/sholl.py +31 -2
  7. swcgeom/core/__init__.py +4 -0
  8. swcgeom/core/branch.py +9 -4
  9. swcgeom/core/{segment.py → compartment.py} +14 -9
  10. swcgeom/core/node.py +0 -8
  11. swcgeom/core/path.py +21 -6
  12. swcgeom/core/population.py +47 -7
  13. swcgeom/core/swc_utils/assembler.py +12 -1
  14. swcgeom/core/swc_utils/base.py +12 -5
  15. swcgeom/core/swc_utils/checker.py +12 -2
  16. swcgeom/core/tree.py +34 -37
  17. swcgeom/core/tree_utils.py +4 -0
  18. swcgeom/images/augmentation.py +6 -1
  19. swcgeom/images/contrast.py +107 -0
  20. swcgeom/images/folder.py +71 -14
  21. swcgeom/images/io.py +74 -88
  22. swcgeom/transforms/__init__.py +2 -0
  23. swcgeom/transforms/image_preprocess.py +100 -0
  24. swcgeom/transforms/image_stack.py +1 -4
  25. swcgeom/transforms/images.py +176 -5
  26. swcgeom/transforms/mst.py +5 -5
  27. swcgeom/transforms/neurolucida_asc.py +495 -0
  28. swcgeom/transforms/tree.py +5 -1
  29. swcgeom/utils/__init__.py +1 -0
  30. swcgeom/utils/neuromorpho.py +425 -300
  31. swcgeom/utils/numpy_helper.py +14 -4
  32. swcgeom/utils/plotter_2d.py +130 -0
  33. swcgeom/utils/renderer.py +28 -139
  34. swcgeom/utils/sdf.py +5 -1
  35. {swcgeom-0.15.0.dist-info → swcgeom-0.17.0.dist-info}/METADATA +3 -3
  36. swcgeom-0.17.0.dist-info/RECORD +65 -0
  37. {swcgeom-0.15.0.dist-info → swcgeom-0.17.0.dist-info}/WHEEL +1 -1
  38. swcgeom/analysis/branch_features.py +0 -67
  39. swcgeom/analysis/path_features.py +0 -37
  40. swcgeom-0.15.0.dist-info/RECORD +0 -62
  41. {swcgeom-0.15.0.dist-info → swcgeom-0.17.0.dist-info}/LICENSE +0 -0
  42. {swcgeom-0.15.0.dist-info → swcgeom-0.17.0.dist-info}/top_level.txt +0 -0
swcgeom/transforms/tree.py CHANGED
@@ -69,7 +69,11 @@ class TreeSmoother(Transform[Tree, Tree]): # pylint: disable=missing-class-docs
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  class TreeNormalizer(Normalizer[Tree]):
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- """Noramlize coordinates and radius to 0-1."""
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+ """Noramlize coordinates and radius to 0-1.
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+
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+ .. deprecated:: 0.6.0
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+ Use :cls:`Normalizer` instead.
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+ """
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  def __init__(self, *args, **kwargs) -> None:
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  warnings.warn(
swcgeom/utils/__init__.py CHANGED
@@ -6,6 +6,7 @@ from swcgeom.utils.ellipse import *
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  from swcgeom.utils.file import *
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  from swcgeom.utils.neuromorpho import *
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  from swcgeom.utils.numpy_helper import *
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+ from swcgeom.utils.plotter_2d import *
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  from swcgeom.utils.renderer import *
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  from swcgeom.utils.sdf import *
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  from swcgeom.utils.solid_geometry import *