supervisely 6.73.380__py3-none-any.whl → 6.73.382__py3-none-any.whl

supervisely/api/app_api.py

@@ -1669,20 +1669,55 @@ class AppApi(TaskApi):
     def start(
         self,
         agent_id,
-        app_id=None,
-        workspace_id=None,
-        description="",
-        params=None,
-        log_level="info",
-        users_id=None,
-        app_version=None,
-        is_branch=False,
-        task_name="run-from-python",
-        restart_policy="never",
-        proxy_keep_url=False,
-        module_id=None,
-        redirect_requests={},
+        app_id: Optional[int] = None,
+        workspace_id: Optional[int] = None,
+        description: str = "",
+        params: Dict[str, Any] = None,
+        log_level: Literal["info", "debug", "warning", "error"] = "info",
+        users_id: Optional[int] = None,
+        app_version: Optional[str] = None,
+        is_branch: bool = False,
+        task_name: str = "run-from-python",
+        restart_policy: Literal["never", "on_error"] = "never",
+        proxy_keep_url: bool = False,
+        module_id: Optional[int] = None,
+        redirect_requests: Dict[str, int] = {},
     ) -> SessionInfo:
+        """Start a new application session (task).
+
+        :param agent_id: ID of the agent to run the task on. If set None - the task will be run on the any available agent.
+        :type agent_id: int
+        :param app_id: Deprecated. Use `module_id` instead.
+        :type app_id: Optional[int]
+        :param workspace_id: ID of the workspace to run the task in. If not specified, the default workspace will be used.
+        :type workspace_id: Optional[int]
+        :param description: Task description which will be shown in UI.
+        :type description: str
+        :param params: Task parameters which will be passed to the application.
+        :type params: Optional[dict]
+        :param log_level: Log level for the task. Default is "info".
+        :type log_level: Literal["info", "debug", "warning", "error"]
+        :param users_id: User ID for which will be created an instance of the application.
+        :type users_id: Optional[int]
+        :param app_version: Application version e.g. "v1.0.0" or branch name e.g. "dev".
+        :type app_version: Optional[str]
+        :param is_branch: If the application version is a branch name, set this parameter to True.
+        :type is_branch: bool
+        :param task_name: Task name which will be shown in UI. Default is "run-from-python".
+        :type task_name: str
+        :param restart_policy: When the app should be restarted: never or if error occurred.
+        :type restart_policy: str
+        :param proxy_keep_url: For internal usage only.
+        :type proxy_keep_url: bool
+        :param module_id: Module ID. Can be obtained from the apps page in UI.
+        :type module_id: Optional[int]
+        :param redirect_requests: For internal usage only in Develop and Debug mode.
+        :type redirect_requests: dict
+        :return: SessionInfo object with information about the started task.
+        :rtype: SessionInfo
+        :raises ValueError: If both app_id and module_id are not provided.
+        :raises ValueError: If both app_id and module_id are provided.
+        """
         users_ids = None
         if users_id is not None:
             users_ids = [users_id]

supervisely/cli/release/release.py

@@ -160,6 +160,7 @@ def upload_archive(
     user_id,
     subapp_path,
     share_app,
+    files,
 ):
     f = open(archive_path, "rb")
     archive_name = os.path.basename(archive_path)
@@ -182,6 +183,13 @@ def upload_archive(
         fields["userId"] = str(user_id)
     if share_app:
         fields["isShared"] = "true"
+    if files:
+        files_contents = {}
+        fields["files"] = files_contents
+        for file_name, file_path in files.items():
+            files_contents[file_name] = Path(file_path).read_text(encoding="utf-8")
+        fields["files"] = json.dumps(files_contents)
+
     e = MultipartEncoder(fields=fields)
     encoder_len = e.len
     with tqdm(
@@ -293,6 +301,7 @@ def release(
     subapp_path="",
     created_at=None,
     share_app=False,
+    files=None,
 ):
     if created_at is None:
         created_at = get_created_at(repo, release_version)
@@ -317,6 +326,7 @@ def release(
             user_id,
             subapp_path,
             share_app,
+            files,
         )
     finally:
         delete_directory(os.path.dirname(archive_path))

supervisely/cli/release/run.py

@@ -347,6 +347,14 @@ def run(
             with open(modal_template_path, "r") as f:
                 modal_template = f.read()
 
+    # get files
+    files = config.get("files", None)
+    if files is not None:
+        files = files.copy()
+        for file_name, file_path in files.items():
+            file_path = str(module_root.joinpath(file_path).absolute())
+            files[file_name] = file_path
+
     # check that everything is commited and pushed
     success = _check_git(repo)
     if not success:
@@ -476,6 +484,7 @@ def run(
             sub_app_directory if sub_app_directory != None else "",
             created_at,
             share_app,
+            files,
         )
         if response.status_code != 200:
             error = f"[red][Error][/] Error releasing the application. Please contact Supervisely team. Status Code: {response.status_code}"

supervisely/convert/volume/nii/nii_planes_volume_converter.py

@@ -150,8 +150,8 @@ class NiiPlaneStructuredConverter(NiiConverter, VolumeConverter):
             objs = []
             spatial_figures = []
             for idx, ann_path in enumerate(item.ann_data, start=1):
-                for mask, pixel_id in helper.get_annotation_from_nii(ann_path):
-                    class_id = pixel_id if item.is_semantic else idx
+                for mask, pixel_value in helper.get_annotation_from_nii(ann_path):
+                    class_id = pixel_value if item.is_semantic else idx
                     class_name = f"Segment_{class_id}"
                     color = None
                     if item.custom_data.get("cls_color_map") is not None:
@@ -161,7 +161,12 @@ class NiiPlaneStructuredConverter(NiiConverter, VolumeConverter):
                     class_name = renamed_classes.get(class_name, class_name)
                     obj_class = meta.get_obj_class(class_name)
                     if obj_class is None:
-                        obj_class = ObjClass(class_name, Mask3D, color)
+                        obj_class = ObjClass(
+                            class_name,
+                            Mask3D,
+                            color,
+                            description=f"{helper.MASK_PIXEL_VALUE}{pixel_value}",
+                        )
                         meta = meta.add_obj_class(obj_class)
                         self._meta_changed = True
                         self._meta = meta

supervisely/convert/volume/nii/nii_volume_converter.py

@@ -126,10 +126,12 @@ class NiiConverter(VolumeConverter):
                     ann_name = get_file_name(ann_name)
 
                 ann_name = renamed_classes.get(ann_name, ann_name)
-                for mask, _ in helper.get_annotation_from_nii(ann_path):
+                for mask, pixel_value in helper.get_annotation_from_nii(ann_path):
                     obj_class = meta.get_obj_class(ann_name)
                     if obj_class is None:
-                        obj_class = ObjClass(ann_name, Mask3D)
+                        obj_class = ObjClass(
+                            ann_name, Mask3D, description=f"{helper.MASK_PIXEL_VALUE}{pixel_value}"
+                        )
                         meta = meta.add_obj_class(obj_class)
                         self._meta_changed = True
                         self._meta = meta

supervisely/convert/volume/nii/nii_volume_helper.py

@@ -15,7 +15,7 @@ from supervisely.volume.volume import convert_3d_nifti_to_nrrd
 
 VOLUME_NAME = "anatomic"
 LABEL_NAME = ["inference", "label", "annotation", "mask", "segmentation"]
-
+MASK_PIXEL_VALUE = "Mask pixel value: "
 
 class PlanePrefix(str, StrEnum):
     """Prefix for plane names."""

supervisely/geometry/mask_3d.py

@@ -769,7 +769,9 @@ class Mask3D(Geometry):
 
         from supervisely.volume.volume import _sitk_image_orient_ras
 
-        sitk_volume = sitk.GetImageFromArray(self.data)
+        # Convert bool data to uint8 for SimpleITK compatibility
+        data_for_sitk = self.data.astype(np.uint8) if self.data.dtype == np.bool_ else self.data
+        sitk_volume = sitk.GetImageFromArray(data_for_sitk)
         if self.space_origin is not None:
             sitk_volume.SetOrigin(self.space_origin)
         if self.space_directions is not None:

{supervisely-6.73.380.dist-info → supervisely-6.73.382.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: supervisely
-Version: 6.73.380
+Version: 6.73.382
 Summary: Supervisely Python SDK.
 Home-page: https://github.com/supervisely/supervisely
 Author: Supervisely

{supervisely-6.73.380.dist-info → supervisely-6.73.382.dist-info}/RECORD

@@ -23,7 +23,7 @@ supervisely/api/advanced_api.py,sha256=Nd5cCnHFWc3PSUrCtENxTGtDjS37_lCHXsgXvUI3T
 supervisely/api/agent_api.py,sha256=8EQBwD6v7KLS0-xKcZ12B7mtzKwG7RRgq1fk1vaN144,8893
 supervisely/api/annotation_api.py,sha256=U6dHUIOt6Fe8XcbX1MA19z-fg91maOumJAawKG5ZJsk,82876
 supervisely/api/api.py,sha256=HyW8K0AEsiFf3HV2o9HbS-UJZfuMwWGIJPERbNifgWg,67695
-supervisely/api/app_api.py,sha256=-nj-1yvuaj4CSlzUR_YKpTJZpupg56QxLhtSIph_u40,73420
+supervisely/api/app_api.py,sha256=u0DLOTS0jMD73bUFDmJkr1y3Tfw70hmbox1gq5Tw1a4,75707
 supervisely/api/constants.py,sha256=WfqIcEpRnU4Mcfb6q0njeRs2VVSoTAJaIyrqBkBjP8I,253
 supervisely/api/dataset_api.py,sha256=7idBMFL8jumWNw-wlBAbQWC09RskG-3GlidfPDukq3Q,47930
 supervisely/api/entities_collection_api.py,sha256=6nbh5KxBzqGwtjV9tgzMFHBKVla2x-pgIV_xfSL6j4E,9960
@@ -563,8 +563,8 @@ supervisely/cli/project/project_download.py,sha256=dEznxE_MhLTYbU9KBbdmw-Ria1Knh
 supervisely/cli/project/project_get.py,sha256=RWnMxuKd_WWhUlA5QEqI_9d4N6x8VDq0taPTWB8nxXc,689
 supervisely/cli/project/project_upload.py,sha256=qA_0ktOpJxUUa_Hliwvny8-uIYDQBiuzHMq8nufbLd4,1416
 supervisely/cli/release/__init__.py,sha256=5aDijgIIDsKFZVayq8anvv5ynWKhC4LZqAdESTKCW2c,335
-supervisely/cli/release/release.py,sha256=OtAi9g_2kvjp5lx4aiTE0JxczzJcaBtDFpHR-rHWFpE,9308
-supervisely/cli/release/run.py,sha256=nuFh9mVFcrUlB4PWagMEC6iUIa7nA2pMiM_CC1IZ42M,19814
+supervisely/cli/release/release.py,sha256=tyAMZdTKXCnzq5yOHHkuk-iC1EgrMRuWynz_hDZLtx0,9626
+supervisely/cli/release/run.py,sha256=bW_d-oengvwTbJBhbhIM0eAh6vL8TD2LIA8kMeJ_REM,20107
 supervisely/cli/task/__init__.py,sha256=n0ofJDqX3AMvvTz1umfBDfEUPDFzk5Htve3nnZFd7fs,67
 supervisely/cli/task/task_set.py,sha256=KIGJ-X0iB7DzX3Ig8720FJh1WpohTVkkPk8HZt2rIzM,1337
 supervisely/cli/teamfiles/__init__.py,sha256=1V9ZFo8-xVOjFFJr7siJx2VAv-F0m44cxMEm5ZEU0Ww,251
@@ -674,9 +674,9 @@ supervisely/convert/volume/dicom/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRk
 supervisely/convert/volume/dicom/dicom_converter.py,sha256=Hw4RxU_qvllk6M26udZE6G-m1RWR8-VVPcEPwFlqrVg,3354
 supervisely/convert/volume/dicom/dicom_helper.py,sha256=OrKlyt1hA5BOXKhE1LF1WxBIv3b6t96xRras4OSAuNM,2891
 supervisely/convert/volume/nii/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-supervisely/convert/volume/nii/nii_planes_volume_converter.py,sha256=dXoBA8AYUOEjLpV2cZJ5n1HDq4_gNhnD__NVsgfc_Qc,14551
-supervisely/convert/volume/nii/nii_volume_converter.py,sha256=BAOKX96-bp6WfTFLrCQNrXk2YhKqIFSU5LJ-auKiAfc,8514
-supervisely/convert/volume/nii/nii_volume_helper.py,sha256=_FepXNu1RIFuzBOv0aAtrG-J2xN3uyyEMcq6pUD9fsk,14159
+supervisely/convert/volume/nii/nii_planes_volume_converter.py,sha256=-3afZ61BqfMVqTWNa19INn7OR7DqiIx_HhfVi1oHTcE,14751
+supervisely/convert/volume/nii/nii_volume_converter.py,sha256=i8rs7NeDUofsG9uCOZuDe9hiB3IdMB_4PomUX_xo16U,8633
+supervisely/convert/volume/nii/nii_volume_helper.py,sha256=CxUuJGYRVs9Uhhdnzzi7ioaV6gnReorIANGTvfab53o,14198
 supervisely/convert/volume/sly/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 supervisely/convert/volume/sly/sly_volume_converter.py,sha256=XmSuxnRqxchG87b244f3h0UHvOt6IkajMquL1drWlCM,5595
 supervisely/convert/volume/sly/sly_volume_helper.py,sha256=gUY0GW3zDMlO2y-zQQG36uoXMrKkKz4-ErM1CDxFCxE,5620
@@ -702,7 +702,7 @@ supervisely/geometry/graph.py,sha256=kSShcGU4kZgwAbvTrqGzC55qha0nI7M5luiMZSbNx_4
 supervisely/geometry/helpers.py,sha256=2gdYMFWTAr836gVXcp-lkDQs9tdaV0ou33kj3mzJBQA,5132
 supervisely/geometry/image_rotator.py,sha256=wrU8cXEUfuNcmPms2myUV4BpZqz_2oDArsEUFeiTpxs,6888
 supervisely/geometry/main_tests.py,sha256=K3Olsz9igHDW2IfIA5JOpjoE8bZ3ex2PXvVR2ZCDrHU,27199
-supervisely/geometry/mask_3d.py,sha256=gaac4wUoG-qmpVcttgfAh2WhS3VUWjcdNqw5V-Aa5GA,26720
+supervisely/geometry/mask_3d.py,sha256=-wGhQcoksnzUEvxe1joM4y2AIrnbNNxAfgWv5i5CM54,26886
 supervisely/geometry/multichannel_bitmap.py,sha256=dL0igkOCVZiIZ9LDU7srFLA50XGo4doE-B5_E1uboXM,4968
 supervisely/geometry/point.py,sha256=7ed_Ipd-Ab8ZeqJF5ft0kP9pKVb2iWXCxPuRhMuweMc,13228
 supervisely/geometry/point_3d.py,sha256=0ico0aV4fuKNBVrysDjUy1Cx1S9CEzBlEVE3AsbVd0E,1669
@@ -1103,9 +1103,9 @@ supervisely/worker_proto/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZ
 supervisely/worker_proto/worker_api_pb2.py,sha256=VQfi5JRBHs2pFCK1snec3JECgGnua3Xjqw_-b3aFxuM,59142
 supervisely/worker_proto/worker_api_pb2_grpc.py,sha256=3BwQXOaP9qpdi0Dt9EKG--Lm8KGN0C5AgmUfRv77_Jk,28940
 supervisely_lib/__init__.py,sha256=7-3QnN8Zf0wj8NCr2oJmqoQWMKKPKTECvjH9pd2S5vY,159
-supervisely-6.73.380.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-supervisely-6.73.380.dist-info/METADATA,sha256=CzUiN8OFu7oIhsIVfHs1IE7oEX-DXrxALa7o1LkYjss,35154
-supervisely-6.73.380.dist-info/WHEEL,sha256=iAkIy5fosb7FzIOwONchHf19Qu7_1wCWyFNR5gu9nU0,91
-supervisely-6.73.380.dist-info/entry_points.txt,sha256=U96-5Hxrp2ApRjnCoUiUhWMqijqh8zLR03sEhWtAcms,102
-supervisely-6.73.380.dist-info/top_level.txt,sha256=kcFVwb7SXtfqZifrZaSE3owHExX4gcNYe7Q2uoby084,28
-supervisely-6.73.380.dist-info/RECORD,,
+supervisely-6.73.382.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+supervisely-6.73.382.dist-info/METADATA,sha256=va2f5WmgT5z98IN3fzGIi2t8M_p2URzhtN_pSgzAePA,35154
+supervisely-6.73.382.dist-info/WHEEL,sha256=iAkIy5fosb7FzIOwONchHf19Qu7_1wCWyFNR5gu9nU0,91
+supervisely-6.73.382.dist-info/entry_points.txt,sha256=U96-5Hxrp2ApRjnCoUiUhWMqijqh8zLR03sEhWtAcms,102
+supervisely-6.73.382.dist-info/top_level.txt,sha256=kcFVwb7SXtfqZifrZaSE3owHExX4gcNYe7Q2uoby084,28
+supervisely-6.73.382.dist-info/RECORD,,