supervisely 6.73.321__py3-none-any.whl → 6.73.323__py3-none-any.whl

supervisely/annotation/annotation.py

@@ -404,7 +404,7 @@ class Annotation:
                 f"Failed to deserialize one of the label from JSON format annotation: \n{repr(e)}"
             )
 
-        custom_data = data.get(AnnotationJsonFields.CUSTOM_DATA, {})
+        custom_data = data.get(AnnotationJsonFields.CUSTOM_DATA, {}) or {}
         prob_labels = None
         if (
             AnnotationJsonFields.PROBABILITY_LABELS in custom_data

supervisely/convert/base_converter.py

@@ -65,11 +65,13 @@ class AvailablePointcloudEpisodesConverters:
     SLY = "supervisely"
     BAG = "rosbag"
     LYFT = "lyft"
+    KITTI360 = "kitti360"
 
 
 class AvailableVolumeConverters:
     SLY = "supervisely"
     DICOM = "dicom"
+    NII = "nii"
 
 
 class BaseConverter:

supervisely/convert/pointcloud_episodes/__init__.py

@@ -7,3 +7,4 @@ from supervisely.convert.pointcloud_episodes.lyft.lyft_converter import LyftEpis
 from supervisely.convert.pointcloud_episodes.nuscenes_conv.nuscenes_converter import (
     NuscenesEpisodesConverter,
 )
+from supervisely.convert.pointcloud_episodes.kitti_360.kitti_360_converter import KITTI360Converter

supervisely/convert/pointcloud_episodes/kitti_360/kitti_360_converter.py

@@ -0,0 +1,242 @@
+import os
+from pathlib import Path
+from typing import Optional, List
+from supervisely import PointcloudEpisodeAnnotation, ProjectMeta, is_development, logger, ObjClass, ObjClassCollection
+from supervisely.geometry.cuboid_3d import Cuboid3d
+from supervisely.api.api import Api, ApiField
+from supervisely.convert.base_converter import AvailablePointcloudEpisodesConverters
+from supervisely.convert.pointcloud_episodes.kitti_360.kitti_360_helper import *
+from supervisely.convert.pointcloud_episodes.pointcloud_episodes_converter import PointcloudEpisodeConverter
+from supervisely.io.fs import (
+    file_exists,
+    get_file_name,
+    get_file_name_with_ext,
+    list_files_recursively,
+    silent_remove,
+)
+from supervisely.pointcloud_annotation.pointcloud_episode_frame_collection import PointcloudEpisodeFrameCollection
+from supervisely.pointcloud_annotation.pointcloud_episode_object_collection import PointcloudEpisodeObjectCollection
+from supervisely.pointcloud_annotation.pointcloud_episode_object import PointcloudEpisodeObject
+from supervisely.pointcloud_annotation.pointcloud_episode_frame import PointcloudEpisodeFrame
+from supervisely.pointcloud_annotation.pointcloud_figure import PointcloudFigure
+
+class KITTI360Converter(PointcloudEpisodeConverter):
+
+    class Item:
+
+        def __init__(
+            self,
+            scene_name: str,
+            frame_paths: List[str],
+            ann_data: Annotation3D,
+            poses_path: str,
+            related_images: Optional[tuple] = None,
+            custom_data: Optional[dict] = None,
+        ):
+            self._scene_name = scene_name
+            self._frame_paths = frame_paths
+            self._ann_data = ann_data
+            self._poses_path = poses_path
+            self._related_images = related_images or []
+
+            self._type = "point_cloud_episode"
+            self._custom_data = custom_data if custom_data is not None else {}
+
+    def __init__(self, *args, **kwargs):
+        self._calib_path = None
+        super().__init__(*args, **kwargs)
+
+    def __str__(self) -> str:
+        return AvailablePointcloudEpisodesConverters.KITTI360
+
+    @property
+    def key_file_ext(self) -> str:
+        return ".bin"
+
+    def validate_format(self) -> bool:
+        try:
+            import kitti360scripts
+        except ImportError:
+            logger.warn("Please run 'pip install kitti360Scripts' to import KITTI-360 data.")
+            return False
+
+        self._items = []
+        subdirs = os.listdir(self._input_data)
+        if len(subdirs) == 1:
+            self._input_data = os.path.join(self._input_data, subdirs[0])
+
+        # * Get calibration path
+        calib_dir = next(iter([(Path(path).parent).as_posix() for path in list_files_recursively(self._input_data, [".txt"], None, True) if Path(path).stem.startswith("calib")]), None)
+        if calib_dir is None:
+            return False
+        self._calib_path = calib_dir
+
+        # * Get pointcloud files paths
+        velodyne_files = list_files_recursively(self._input_data, [".bin"], None, True)
+        if len(velodyne_files) == 0:
+            return False
+
+        # * Get annotation files paths and related images
+        boxes_ann_files = list_files_recursively(self._input_data, [".xml"], None, True)
+        if len(boxes_ann_files) == 0:
+            return False
+        rimage_files = list_files_recursively(self._input_data, [".png"], None, True)
+
+        kitti_anns = []
+        for ann_file in boxes_ann_files:
+            key_name = Path(ann_file).stem
+
+            # * Get pointcloud files
+            frame_paths = []
+            for path in velodyne_files:
+                if key_name in Path(path).parts:
+                    frame_paths.append(path)
+            if len(frame_paths) == 0:
+                logger.warn("No frames found for name: %s", key_name)
+                continue
+
+            # * Get related images
+            rimages = []
+            for rimage in rimage_files:
+                path = Path(rimage)
+                if key_name in path.parts:
+                    cam_name = path.parts[-3]
+                    rimages.append((cam_name, rimage))
+
+            # * Get poses
+            poses_filter = (
+                lambda x: x.endswith("cam0_to_world.txt") and key_name in Path(x).parts
+            )
+            poses_path = next(
+                path
+                for path in list_files_recursively(self._input_data, [".txt"], None, True)
+                if poses_filter(path)
+            )
+            if poses_path is None:
+                logger.warn("No poses found for name: %s", key_name)
+                continue
+
+            # * Parse annotation
+            ann = Annotation3D(ann_file)
+            kitti_anns.append(ann)
+
+            self._items.append(
+                self.Item(key_name, frame_paths, ann, poses_path, rimages)
+            )
+
+        # * Get object class names for meta
+        obj_class_names = set()
+        for ann in kitti_anns:
+            for obj in ann.get_objects():
+                obj_class_names.add(obj.name)
+        obj_classes = [ObjClass(obj_class, Cuboid3d) for obj_class in obj_class_names]
+        self._meta = ProjectMeta(obj_classes=ObjClassCollection(obj_classes))
+        return self.items_count > 0
+
+    def to_supervisely(
+        self,
+        item,
+        meta: ProjectMeta,
+        renamed_classes: dict = {},
+        renamed_tags: dict = {},
+        static_transformations: StaticTransformations = None,
+    ) -> PointcloudEpisodeAnnotation:
+        static_transformations.set_cam2world(item._poses_path)
+
+        frame_cnt = len(item._frame_paths)
+        objs, frames = [], []
+
+        frame_idx_to_figures = {idx: [] for idx in range(frame_cnt)}
+        for obj in item._ann_data.get_objects():
+            pcd_obj = PointcloudEpisodeObject(meta.get_obj_class(obj.name))
+            objs.append(pcd_obj)
+
+            for idx in range(frame_cnt):
+                if obj.start_frame <= idx <= obj.end_frame:
+                    tr_matrix = static_transformations.world_to_velo_transformation(obj, idx)
+                    geom = convert_kitti_cuboid_to_supervisely_geometry(tr_matrix)
+                    frame_idx_to_figures[idx].append(PointcloudFigure(pcd_obj, geom, idx))
+        for idx, figures in frame_idx_to_figures.items():
+            frame = PointcloudEpisodeFrame(idx, figures)
+            frames.append(frame)
+        obj_collection = PointcloudEpisodeObjectCollection(objs)
+        frame_collection = PointcloudEpisodeFrameCollection(frames)
+        return PointcloudEpisodeAnnotation(
+            frame_cnt, objects=obj_collection, frames=frame_collection
+        )
+
+    def upload_dataset(self, api: Api, dataset_id: int, batch_size: int = 1, log_progress=True):
+        meta, renamed_classes, renamed_tags = self.merge_metas_with_conflicts(api, dataset_id)
+
+        dataset_info = api.dataset.get_info_by_id(dataset_id)
+        if log_progress:
+            progress, progress_cb = self.get_progress(sum([len(item._frame_paths) for item in self._items]), "Converting pointcloud episodes...")
+        else:
+            progress_cb = None
+        static_transformations = StaticTransformations(self._calib_path)
+        scene_ds = dataset_info
+        multiple_items = self.items_count > 1
+        for item in self._items:
+            scene_ds = api.dataset.create(dataset_info.project_id, item._scene_name, parent_id=dataset_id) if multiple_items else dataset_info
+            frame_to_pcd_ids = {}
+            for idx, frame_path in enumerate(item._frame_paths):
+                # * Convert pointcloud from ".bin" to ".pcd"
+                pcd_path = str(Path(frame_path).with_suffix(".pcd"))
+                if file_exists(pcd_path):
+                    logger.warning(f"Overwriting file with path: {pcd_path}")
+                convert_bin_to_pcd(frame_path, pcd_path)
+
+                # * Upload pointcloud
+                pcd_name = get_file_name_with_ext(pcd_path)
+                info = api.pointcloud_episode.upload_path(scene_ds.id, pcd_name, pcd_path, {"frame": idx})
+                pcd_id = info.id
+                frame_to_pcd_ids[idx] = pcd_id
+
+                # * Clean up
+                silent_remove(pcd_path)
+
+                if log_progress:
+                    progress_cb(1)
+
+            # * Upload photocontext
+            rimage_jsons = []
+            cam_names = []
+            hashes = api.pointcloud_episode.upload_related_images(
+                [rimage_path for _, rimage_path in item._related_images]
+            )
+            for (cam_name, rimage_path), img, pcd_id in zip(
+                item._related_images, hashes, list(frame_to_pcd_ids.values())
+            ):
+                cam_num = int(cam_name[-1])
+                rimage_info = convert_calib_to_image_meta(
+                    get_file_name(rimage_path), static_transformations, cam_num
+                )
+                image_json = {
+                    ApiField.ENTITY_ID: pcd_id,
+                    ApiField.NAME: cam_name,
+                    ApiField.HASH: img,
+                    ApiField.META: rimage_info[ApiField.META],
+                }
+                rimage_jsons.append(image_json)
+                cam_names.append(cam_name)
+            if rimage_jsons:
+                api.pointcloud_episode.add_related_images(rimage_jsons, cam_names)
+
+            # * Convert annotation and upload
+            try:
+                ann = self.to_supervisely(
+                    item, meta, renamed_classes, renamed_tags, static_transformations
+                )
+                api.pointcloud_episode.annotation.append(scene_ds.id, ann, frame_to_pcd_ids)
+            except Exception as e:
+                logger.error(
+                    f"Failed to upload annotation for scene: {scene_ds.name}. Error: {repr(e)}",
+                    stack_info=False,
+                )
+                continue
+
+            logger.info(f"Dataset ID:{scene_ds.id} has been successfully uploaded.")
+
+        if log_progress:
+            if is_development():
+                progress.close()

supervisely/convert/pointcloud_episodes/kitti_360/kitti_360_helper.py

@@ -0,0 +1,386 @@
+from supervisely import logger
+from supervisely.io.fs import get_file_name
+from supervisely.geometry.cuboid_3d import Cuboid3d
+from supervisely.geometry.point_3d import Vector3d
+from supervisely.geometry.point import Point
+
+from collections import defaultdict
+import os
+import numpy as np
+
+
+MAX_N = 1000
+
+
+def local2global(semanticId, instanceId):
+    globalId = semanticId * MAX_N + instanceId
+    if isinstance(globalId, np.ndarray):
+        return globalId.astype(np.int)
+    else:
+        return int(globalId)
+
+
+def global2local(globalId):
+    semanticId = globalId // MAX_N
+    instanceId = globalId % MAX_N
+    if isinstance(globalId, np.ndarray):
+        return semanticId.astype(int), instanceId.astype(int)
+    else:
+        return int(semanticId), int(instanceId)
+
+
+annotation2global = defaultdict()
+
+
+# Abstract base class for annotation objects
+class KITTI360Object:
+    from abc import ABCMeta
+
+    __metaclass__ = ABCMeta
+
+    def __init__(self):
+        from matplotlib import cm
+
+        # the label
+        self.label = ""
+
+        # colormap
+        self.cmap = cm.get_cmap("Set1")
+        self.cmap_length = 9
+
+    def getColor(self, idx):
+        if idx == 0:
+            return np.array([0, 0, 0])
+        return np.asarray(self.cmap(idx % self.cmap_length)[:3]) * 255.0
+
+    # def assignColor(self):
+    #     from kitti360scripts.helpers.labels import id2label  # pylint: disable=import-error
+
+    #     if self.semanticId >= 0:
+    #         self.semanticColor = id2label[self.semanticId].color
+    #         if self.instanceId > 0:
+    #             self.instanceColor = self.getColor(self.instanceId)
+    #         else:
+    #             self.instanceColor = self.semanticColor
+
+
+# Class that contains the information of a single annotated object as 3D bounding box
+class KITTI360Bbox3D(KITTI360Object):
+    # Constructor
+    def __init__(self):
+        KITTI360Object.__init__(self)
+        # the polygon as list of points
+        self.vertices = []
+        self.faces = []
+        self.lines = [
+            [0, 5],
+            [1, 4],
+            [2, 7],
+            [3, 6],
+            [0, 1],
+            [1, 3],
+            [3, 2],
+            [2, 0],
+            [4, 5],
+            [5, 7],
+            [7, 6],
+            [6, 4],
+        ]
+
+        # the ID of the corresponding object
+        self.semanticId = -1
+        self.instanceId = -1
+        self.annotationId = -1
+
+        # the window that contains the bbox
+        self.start_frame = -1
+        self.end_frame = -1
+
+        # timestamp of the bbox (-1 if statis)
+        self.timestamp = -1
+
+        # projected vertices
+        self.vertices_proj = None
+        self.meshes = []
+
+        # name
+        self.name = ""
+
+    def __str__(self):
+        return self.name
+
+    # def generateMeshes(self):
+    #     self.meshes = []
+    #     if self.vertices_proj:
+    #         for fidx in range(self.faces.shape[0]):
+    #             self.meshes.append(
+    #                 [
+    #                     Point(self.vertices_proj[0][int(x)], self.vertices_proj[1][int(x)])
+    #                     for x in self.faces[fidx]
+    #                 ]
+    #             )
+
+    def parseOpencvMatrix(self, node):
+        rows = int(node.find("rows").text)
+        cols = int(node.find("cols").text)
+        data = node.find("data").text.split(" ")
+
+        mat = []
+        for d in data:
+            d = d.replace("\n", "")
+            if len(d) < 1:
+                continue
+            mat.append(float(d))
+        mat = np.reshape(mat, [rows, cols])
+        return mat
+
+    def parseVertices(self, child):
+        transform = self.parseOpencvMatrix(child.find("transform"))
+        R = transform[:3, :3]
+        T = transform[:3, 3]
+        vertices = self.parseOpencvMatrix(child.find("vertices"))
+        faces = self.parseOpencvMatrix(child.find("faces"))
+
+        vertices = np.matmul(R, vertices.transpose()).transpose() + T
+        self.vertices = vertices
+        self.faces = faces
+        self.R = R
+        self.T = T
+
+        self.transform = transform
+
+    def parseBbox(self, child):
+        from kitti360scripts.helpers.labels import kittiId2label  # pylint: disable=import-error
+
+        semanticIdKITTI = int(child.find("semanticId").text)
+        self.semanticId = kittiId2label[semanticIdKITTI].id
+        self.instanceId = int(child.find("instanceId").text)
+        # self.name = str(child.find('label').text)
+        self.name = kittiId2label[semanticIdKITTI].name
+
+        self.start_frame = int(child.find("start_frame").text)
+        self.end_frame = int(child.find("end_frame").text)
+
+        self.timestamp = int(child.find("timestamp").text)
+
+        self.annotationId = int(child.find("index").text) + 1
+
+        global annotation2global
+        annotation2global[self.annotationId] = local2global(self.semanticId, self.instanceId)
+        self.parseVertices(child)
+
+    def parseStuff(self, child):
+        from kitti360scripts.helpers.labels import name2label  # pylint: disable=import-error
+
+        classmap = {
+            "driveway": "parking",
+            "ground": "terrain",
+            "unknownGround": "ground",
+            "railtrack": "rail track",
+        }
+        label = child.find("label").text
+        if label in classmap.keys():
+            label = classmap[label]
+
+        self.start_frame = int(child.find("start_frame").text)
+        self.end_frame = int(child.find("end_frame").text)
+
+        self.semanticId = name2label[label].id
+        self.instanceId = 0
+        self.parseVertices(child)
+
+
+# Class that contains the information of the point cloud a single frame
+class KITTI360Point3D(KITTI360Object):
+    # Constructor
+    def __init__(self):
+        KITTI360Object.__init__(self)
+
+        self.vertices = []
+
+        self.vertices_proj = None
+
+        # the ID of the corresponding object
+        self.semanticId = -1
+        self.instanceId = -1
+        self.annotationId = -1
+
+        # name
+        self.name = ""
+
+        # color
+        self.semanticColor = None
+        self.instanceColor = None
+
+    def __str__(self):
+        return self.name
+
+    # def generateMeshes(self):
+    #     pass
+
+
+# Meta class for KITTI360Bbox3D
+class Annotation3D:
+    def __init__(self, labelPath):
+        from kitti360scripts.helpers.labels import labels  # pylint: disable=import-error
+        import xml.etree.ElementTree as ET
+
+        key_name = get_file_name(labelPath)
+        # load annotation
+        tree = ET.parse(labelPath)
+        root = tree.getroot()
+
+        self.objects = defaultdict(dict)
+
+        self.num_bbox = 0
+        for child in root:
+            if child.find("transform") is None:
+                continue
+            obj = KITTI360Bbox3D()
+            obj.parseBbox(child)
+            globalId = local2global(obj.semanticId, obj.instanceId)
+            self.objects[globalId][obj.timestamp] = obj
+            self.num_bbox += 1
+
+        globalIds = np.asarray(list(self.objects.keys()))
+        semanticIds, instanceIds = global2local(globalIds)
+        for label in labels:
+            if label.hasInstances:
+                print(f"{label.name:<30}:\t {(semanticIds==label.id).sum()}")
+        print(f"Loaded {len(globalIds)} instances")
+        print(f"Loaded {self.num_bbox} boxes")
+
+    def __call__(self, semanticId, instanceId, timestamp=None):
+        globalId = local2global(semanticId, instanceId)
+        if globalId in self.objects.keys():
+            # static object
+            if len(self.objects[globalId].keys()) == 1:
+                if -1 in self.objects[globalId].keys():
+                    return self.objects[globalId][-1]
+                else:
+                    return None
+            # dynamic object
+            else:
+                return self.objects[globalId][timestamp]
+        else:
+            return None
+
+    def get_objects(self):
+        return [list(obj.values())[0] for obj in self.objects.values()]
+
+class StaticTransformations:
+    def __init__(self, calibrations_path):
+        import kitti360scripts.devkits.commons.loadCalibration as lc  # pylint: disable=import-error
+
+        cam2velo_path = os.path.join(calibrations_path, "calib_cam_to_velo.txt")
+        self.cam2velo = lc.loadCalibrationRigid(cam2velo_path)
+        perspective_path = os.path.join(calibrations_path, "perspective.txt")
+        self.intrinsic_calibrations = lc.loadPerspectiveIntrinsic(perspective_path)
+        self.cam2world = None
+
+    def set_cam2world(self, cam2world_path):
+        if not os.path.isfile(cam2world_path):
+            logger.warn("Camera to world calibration file was not found")
+            return
+
+        cam2world_rows = np.loadtxt(cam2world_path)
+        cam2world_rigid = np.reshape(cam2world_rows[:, 1:], (-1, 4, 4))
+        frames_numbers = list(np.reshape(cam2world_rows[:, :1], (-1)).astype(int))
+        cam2world = {}
+
+        current_rigid = cam2world_rigid[0]
+
+        for frame_index in range(0, frames_numbers[-1]):
+            if frame_index in frames_numbers:
+                mapped_index = frames_numbers.index(frame_index)
+                current_rigid = cam2world_rigid[mapped_index]
+
+            # (Tr(cam -> world))
+            cam2world[frame_index] = current_rigid
+        self.cam2world = cam2world
+
+    def world_to_velo_transformation(self, obj, frame_index):
+        # rotate_z = Rotation.from_rotvec(np.pi * np.array([0, 0, 1])).as_matrix()
+        # rotate_z = np.hstack((rotate_z, np.asarray([[0, 0, 0]]).T))
+
+        # tr0(local -> fixed_coordinates_local)
+        tr0 = np.asarray([[0, -1, 0, 0], [1, 0, 0, 0], [0, 0, 1, 0], [0, 0, 0, 1]])
+
+        # tr0(fixed_coordinates_local -> world)
+        tr1 = obj.transform
+
+        # tr2(world -> cam)
+        tr2 = np.linalg.inv(self.cam2world[frame_index])
+
+        # tr3(world -> cam)
+        tr3 = self.cam2velo
+
+        return tr3 @ tr2 @ tr1 @ tr0
+
+    def get_extrinsic_matrix(self):
+        return np.linalg.inv(self.cam2velo)[:3, :4]
+
+    def get_intrinsics_matrix(self, camera_num):
+        try:
+            matrix = self.intrinsic_calibrations[f"P_rect_0{camera_num}"][:3, :3]
+            return matrix
+        except KeyError:
+            logger.warn(f"Camera {camera_num} intrinsic matrix was not found")
+        return
+
+def convert_kitti_cuboid_to_supervisely_geometry(tr_matrix):
+    import transforms3d  # pylint: disable=import-error
+    from scipy.spatial.transform.rotation import Rotation
+
+    Tdash, Rdash, Zdash, _ = transforms3d.affines.decompose44(tr_matrix)
+
+    x, y, z = Tdash[0], Tdash[1], Tdash[2]
+    position = Vector3d(x, y, z)
+
+    rotation_angles = Rotation.from_matrix(Rdash).as_euler("xyz", degrees=False)
+    r_x, r_y, r_z = rotation_angles[0], rotation_angles[1], rotation_angles[2]
+
+    # Invert the bbox by adding π to the yaw while maintaining its degree relative to the world
+    rotation = Vector3d(r_x, r_y, r_z + np.pi)
+
+    w, h, l = Zdash[0], Zdash[1], Zdash[2]
+    dimension = Vector3d(w, h, l)
+
+    return Cuboid3d(position, rotation, dimension)
+
+def convert_bin_to_pcd(src, dst):
+    import open3d as o3d  # pylint: disable=import-error
+
+    try:
+        bin = np.fromfile(src, dtype=np.float32).reshape(-1, 4)
+    except ValueError as e:
+        raise Exception(
+            f"Incorrect data in the KITTI 3D pointcloud file: {src}. "
+            f"There was an error while trying to reshape the data into a 4-column matrix: {e}. "
+            "Please ensure that the binary file contains a multiple of 4 elements to be "
+            "successfully reshaped into a (N, 4) array.\n"
+        )
+    points = bin[:, 0:3]
+    intensity = bin[:, -1]
+    intensity_fake_rgb = np.zeros((intensity.shape[0], 3))
+    intensity_fake_rgb[:, 0] = intensity
+    pc = o3d.geometry.PointCloud(o3d.utility.Vector3dVector(points))
+    pc.colors = o3d.utility.Vector3dVector(intensity_fake_rgb)
+    o3d.io.write_point_cloud(dst, pc)
+
+
+def convert_calib_to_image_meta(image_name, static, cam_num):
+    intrinsic_matrix = static.get_intrinsics_matrix(cam_num)
+    extrinsic_matrix = static.get_extrinsic_matrix()
+
+    data = {
+        "name": image_name,
+        "meta": {
+            "deviceId": cam_num,
+            "sensorsData": {
+                "extrinsicMatrix": list(extrinsic_matrix.flatten().astype(float)),
+                "intrinsicMatrix": list(intrinsic_matrix.flatten().astype(float)),
+            },
+        },
+    }
+    return data

supervisely/convert/volume/__init__.py

@@ -1,3 +1,4 @@
 # Volume
 from supervisely.convert.volume.sly.sly_volume_converter import SLYVolumeConverter
 from supervisely.convert.volume.dicom.dicom_converter import DICOMConverter
+from supervisely.convert.volume.nii.nii_volume_converter import NiiConverter

supervisely/convert/volume/nii/nii_volume_converter.py

@@ -0,0 +1,151 @@
+import os
+from pathlib import Path
+
+import magic
+
+from supervisely import ProjectMeta, generate_free_name, logger
+from supervisely._utils import batched, is_development
+from supervisely.annotation.obj_class import ObjClass
+from supervisely.annotation.obj_class_collection import ObjClassCollection
+from supervisely.api.api import Api
+from supervisely.convert.base_converter import AvailableVolumeConverters
+from supervisely.convert.volume.nii import nii_volume_helper as helper
+from supervisely.convert.volume.volume_converter import VolumeConverter
+from supervisely.geometry.mask_3d import Mask3D
+from supervisely.io.fs import (
+    get_file_ext,
+    get_file_name,
+    get_file_name_with_ext,
+    list_files,
+)
+from supervisely.volume.volume import is_nifti_file
+from supervisely.volume_annotation.volume_annotation import VolumeAnnotation
+from supervisely.volume_annotation.volume_object import VolumeObject
+
+
+class NiiConverter(VolumeConverter):
+
+    def __str__(self) -> str:
+        return AvailableVolumeConverters.NII
+
+    def validate_format(self) -> bool:
+        # create Items
+        converted_dir_name = "converted"
+        # nrrds_dict = {}
+        nifti_dict = {}
+        nifti_dirs = {}
+        for root, _, files in os.walk(self._input_data):
+            dir_name = os.path.basename(root)
+            nifti_dirs[dir_name] = root
+            if converted_dir_name in root:
+                continue
+            for file in files:
+                path = os.path.join(root, file)
+                mime = magic.from_file(path, mime=True)
+                if mime == "application/gzip" or mime == "application/octet-stream":
+                    if is_nifti_file(path):  # is nifti
+                        name = get_file_name(path)
+                        if name.endswith(".nii"):
+                            name = get_file_name(name)
+                        nifti_dict[name] = path
+
+        self._items = []
+        skip_files = []
+        for name, nrrd_path in nifti_dict.items():
+            if name in nifti_dirs:
+                item = self.Item(item_path=nrrd_path)
+                ann_dir = nifti_dirs[name]
+                item.ann_data = list_files(ann_dir, [".nii", ".nii.gz", ".gz"], None, True)
+                self._items.append(item)
+                skip_files.extend(item.ann_data)
+                skip_files.append(nrrd_path)
+
+        for name, nrrd_path in nifti_dict.items():
+            if nrrd_path in skip_files:
+                continue
+            item = self.Item(item_path=nrrd_path)
+            self._items.append(item)
+
+        self._meta = ProjectMeta()
+        return self.items_count > 0
+
+    def upload_dataset(
+        self,
+        api: Api,
+        dataset_id: int,
+        batch_size: int = 1,
+        log_progress=True,
+    ):
+        """Upload converted data to Supervisely"""
+
+        meta, renamed_classes, renamed_tags = self.merge_metas_with_conflicts(api, dataset_id)
+
+        existing_names = set([vol.name for vol in api.volume.get_list(dataset_id)])
+
+        if log_progress:
+            progress, progress_cb = self.get_progress(
+                self.items_count, "Converting and uploading volumes..."
+            )
+        else:
+            progress_cb = None
+
+        converted_dir_name = "converted"
+        converted_dir = os.path.join(self._input_data, converted_dir_name)
+        meta_changed = False
+
+        for batch in batched(self._items, batch_size=batch_size):
+            item_names = []
+            item_paths = []
+
+            for item in batch:
+                # nii_path = item.path
+                item.path = helper.nifti_to_nrrd(item.path, converted_dir)
+                ext = get_file_ext(item.path)
+                if ext.lower() != ext:
+                    new_volume_path = Path(item.path).with_suffix(ext.lower()).as_posix()
+                    os.rename(item.path, new_volume_path)
+                    item.path = new_volume_path
+                item.name = get_file_name_with_ext(item.path)
+                item.name = generate_free_name(
+                    existing_names, item.name, with_ext=True, extend_used_names=True
+                )
+                item_names.append(item.name)
+                item_paths.append(item.path)
+
+                volume_info = api.volume.upload_nrrd_serie_path(
+                    dataset_id, name=item.name, path=item.path
+                )
+
+                if isinstance(item.ann_data, list) and len(item.ann_data) > 0:
+                    objs = []
+                    spatial_figures = []
+                    for ann_path in item.ann_data:
+                        ann_name = get_file_name(ann_path)
+                        if ann_name.endswith(".nii"):
+                            ann_name = get_file_name(ann_name)
+                        for mask, _ in helper.get_annotation_from_nii(ann_path):
+                            obj_class = meta.get_obj_class(ann_name)
+                            if obj_class is None:
+                                obj_class = ObjClass(ann_name, Mask3D)
+                                meta = meta.add_obj_class(obj_class)
+                                meta_changed = True
+                            obj = VolumeObject(obj_class, mask_3d=mask)
+                            spatial_figures.append(obj.figure)
+                            objs.append(obj)
+                    ann = VolumeAnnotation(
+                        volume_info.meta, objects=objs, spatial_figures=spatial_figures
+                    )
+
+                    if meta_changed:
+                        self._meta = meta
+                        _, _, _ = self.merge_metas_with_conflicts(api, dataset_id)
+
+                    api.volume.annotation.append(volume_info.id, ann)
+
+            if log_progress:
+                progress_cb(len(batch))
+
+        if log_progress:
+            if is_development():
+                progress.close()
+        logger.info(f"Dataset ID:{dataset_id} has been successfully uploaded.")

supervisely/convert/volume/nii/nii_volume_helper.py

@@ -0,0 +1,38 @@
+import os
+from typing import Generator
+
+import nrrd
+import numpy as np
+
+from supervisely.geometry.mask_3d import Mask3D
+from supervisely.io.fs import ensure_base_path, get_file_ext, get_file_name
+from supervisely.volume.volume import convert_3d_nifti_to_nrrd
+
+
+def nifti_to_nrrd(nii_file_path: str, converted_dir: str) -> str:
+    """Convert NIfTI 3D volume file to NRRD 3D volume file."""
+
+    output_name = get_file_name(nii_file_path)
+    if get_file_ext(output_name) == ".nii":
+        output_name = get_file_name(output_name)
+
+    data, header = convert_3d_nifti_to_nrrd(nii_file_path)
+
+    nrrd_file_path = os.path.join(converted_dir, f"{output_name}.nrrd")
+    ensure_base_path(nrrd_file_path)
+
+    nrrd.write(nrrd_file_path, data, header)
+    return nrrd_file_path
+
+
+def get_annotation_from_nii(path: str) -> Generator[Mask3D, None, None]:
+    """Get annotation from NIfTI 3D volume file."""
+
+    data, _ = convert_3d_nifti_to_nrrd(path)
+    unique_classes = np.unique(data)
+
+    for class_id in unique_classes:
+        if class_id == 0:
+            continue
+        mask = Mask3D(data == class_id)
+        yield mask, class_id

supervisely/nn/inference/inference.py

@@ -1347,6 +1347,7 @@ class Inference:
                 source=images_np,
                 settings=settings,
             )
+            anns = self._exclude_duplicated_predictions(api, anns, settings, dataset_id, ids)
             results.extend(self._format_output(anns, slides_data))
         return results
 
@@ -1395,6 +1396,10 @@ class Inference:
                 )
                 self.cache.set_project_meta(output_project_id, output_project_meta)
 
+            ann = self._exclude_duplicated_predictions(
+                api, anns, settings, ds_info.id, [image_id], output_project_meta
+            )[0]
+
             logger.debug(
                 "Uploading annotation...",
                 extra={
@@ -1404,6 +1409,10 @@ class Inference:
                 },
             )
             api.annotation.upload_ann(image_id, ann)
+        else:
+            ann = self._exclude_duplicated_predictions(
+                api, anns, settings, image_info.dataset_id, [image_id]
+            )[0]
 
         result = self._format_output(anns, slides_data)[0]
         if async_inference_request_uuid is not None and ann is not None:
@@ -1786,6 +1795,15 @@ class Inference:
                 batch_results = []
                 for i, ann in enumerate(anns):
                     image_info: ImageInfo = images_infos_dict[image_ids_batch[i]]
+                    ds_info = dataset_infos_dict[image_info.dataset_id]
+                    meta = output_project_metas_dict.get(ds_info.project_id, None)
+                    iou = settings.get("existing_objects_iou_thresh")
+                    if meta is None and isinstance(iou, float) and iou > 0:
+                        meta = ProjectMeta.from_json(api.project.get_meta(ds_info.project_id))
+                        output_project_metas_dict[ds_info.project_id] = meta
+                    ann = self._exclude_duplicated_predictions(
+                        api, [ann], settings, ds_info.id, [image_info.id], meta
+                    )[0]
                     batch_results.append(
                         {
                             "annotation": ann.to_json(),
@@ -2086,6 +2104,19 @@ class Inference:
                         source=images_nps,
                         settings=settings,
                     )
+                    iou = settings.get("existing_objects_iou_thresh")
+                    if output_project_meta is None and isinstance(iou, float) and iou > 0:
+                        output_project_meta = ProjectMeta.from_json(
+                            api.project.get_meta(project_info.id)
+                        )
+                    anns = self._exclude_duplicated_predictions(
+                        api,
+                        anns,
+                        settings,
+                        dataset_info.id,
+                        [ii.id for ii in images_infos_batch],
+                        output_project_meta,
+                    )
                     batch_results = []
                     for i, ann in enumerate(anns):
                         batch_results.append(
@@ -2935,7 +2966,9 @@ class Inference:
         parser = argparse.ArgumentParser(description="Run Inference Serving")
 
         # Positional args
-        parser.add_argument("mode", nargs="?", type=str, help="Mode of operation: 'deploy' or 'predict'")
+        parser.add_argument(
+            "mode", nargs="?", type=str, help="Mode of operation: 'deploy' or 'predict'"
+        )
         parser.add_argument("input", nargs="?", type=str, help="Local path to input data")
 
         # Deploy args
@@ -3459,6 +3492,127 @@ class Inference:
                 f"Checkpoint {checkpoint_url} not found in Team Files. Cannot set workflow input"
             )
 
+    def _exclude_duplicated_predictions(
+        self,
+        api: Api,
+        pred_anns: List[Annotation],
+        settings: dict,
+        dataset_id: int,
+        gt_image_ids: List[int],
+        meta: Optional[ProjectMeta] = None,
+    ):
+        """
+        Filter out predictions that significantly overlap with ground truth (GT) objects.
+
+        This is a wrapper around the `_filter_duplicated_predictions_from_ann` method that does the following:
+        - Checks inference settings for the IoU threshold (`existing_objects_iou_thresh`)
+        - Gets ProjectMeta object if not provided
+        - Downloads GT annotations for the specified image IDs
+        - Filters out predictions that have an IoU greater than or equal to the specified threshold with any GT object
+
+        :param api: Supervisely API object
+        :type api: Api
+        :param pred_anns: List of Annotation objects containing predictions
+        :type pred_anns: List[Annotation]
+        :param settings: Inference settings
+        :type settings: dict
+        :param dataset_id: ID of the dataset containing the images
+        :type dataset_id: int
+        :param gt_image_ids: List of image IDs to filter predictions. All images should belong to the same dataset
+        :type gt_image_ids: List[int]
+        :param meta: ProjectMeta object
+        :type meta: Optional[ProjectMeta]
+        :return: List of Annotation objects containing filtered predictions
+        :rtype: List[Annotation]
+
+        Notes:
+        ------
+        - Requires PyTorch and torchvision for IoU calculations
+        - This method is useful for identifying new objects that aren't already annotated in the ground truth
+        """
+        iou = settings.get("existing_objects_iou_thresh")
+        if isinstance(iou, float) and 0 < iou <= 1:
+            if meta is None:
+                ds = api.dataset.get_info_by_id(dataset_id)
+                meta = ProjectMeta.from_json(api.project.get_meta(ds.project_id))
+            gt_anns = api.annotation.download_json_batch(dataset_id, gt_image_ids)
+            gt_anns = [Annotation.from_json(ann, meta) for ann in gt_anns]
+            for i in range(0, len(pred_anns)):
+                before = len(pred_anns[i].labels)
+                with Timer() as timer:
+                    pred_anns[i] = self._filter_duplicated_predictions_from_ann(
+                        gt_anns[i], pred_anns[i], iou
+                    )
+                after = len(pred_anns[i].labels)
+                logger.debug(
+                    f"{[i]}: applied NMS with IoU={iou}. Before: {before}, After: {after}. Time: {timer.get_time():.3f}ms"
+                )
+        return pred_anns
+
+    def _filter_duplicated_predictions_from_ann(
+        self, gt_ann: Annotation, pred_ann: Annotation, iou_threshold: float
+    ) -> Annotation:
+        """
+        Filter out predictions that significantly overlap with ground truth annotations.
+
+        This function compares each prediction with ground truth annotations of the same class
+        and removes predictions that have an IoU (Intersection over Union) greater than or equal
+        to the specified threshold with any ground truth annotation. This is useful for identifying
+        new objects that aren't already annotated in the ground truth.
+
+        :param gt_ann: Annotation object containing ground truth labels
+        :type gt_ann: Annotation
+        :param pred_ann: Annotation object containing prediction labels to be filtered
+        :type pred_ann: Annotation
+        :param iou_threshold:   IoU threshold (0.0-1.0). Predictions with IoU >= threshold with any
+                                ground truth box of the same class will be removed
+        :type iou_threshold: float
+        :return: A new annotation object containing only predictions that don't significantly
+                 overlap with ground truth annotations
+        :rtype: Annotation
+
+
+        Notes:
+        ------
+        - Predictions with classes not present in ground truth will be kept
+        - Requires PyTorch and torchvision for IoU calculations
+        """
+
+        try:
+            import torch
+            from torchvision.ops import box_iou
+
+        except ImportError:
+            raise ImportError("Please install PyTorch and torchvision to use this feature.")
+
+        def _to_tensor(geom):
+            return torch.tensor([geom.left, geom.top, geom.right, geom.bottom]).float()
+
+        new_labels = []
+        pred_cls_bboxes = defaultdict(list)
+        for label in pred_ann.labels:
+            pred_cls_bboxes[label.obj_class.name].append(label)
+
+        gt_cls_bboxes = defaultdict(list)
+        for label in gt_ann.labels:
+            if label.obj_class.name not in pred_cls_bboxes:
+                continue
+            gt_cls_bboxes[label.obj_class.name].append(label)
+
+        for name, pred in pred_cls_bboxes.items():
+            gt = gt_cls_bboxes[name]
+            if len(gt) == 0:
+                new_labels.extend(pred)
+                continue
+            pred_bboxes = torch.stack([_to_tensor(l.geometry.to_bbox()) for l in pred]).float()
+            gt_bboxes = torch.stack([_to_tensor(l.geometry.to_bbox()) for l in gt]).float()
+            iou_matrix = box_iou(pred_bboxes, gt_bboxes)
+            iou_matrix = iou_matrix.cpu().numpy()
+            keep_indices = np.where(np.all(iou_matrix < iou_threshold, axis=1))[0]
+            new_labels.extend([pred[i] for i in keep_indices])
+
+        return pred_ann.clone(labels=new_labels)
+
 
 def _get_log_extra_for_inference_request(inference_request_uuid, inference_request: dict):
     log_extra = {

supervisely/volume/volume.py

@@ -799,6 +799,49 @@ def convert_nifti_to_nrrd(path: str) -> Tuple[np.ndarray, dict]:
     }
     return data, header
 
+def convert_3d_nifti_to_nrrd(path: str) -> Tuple[np.ndarray, dict]:
+    """Convert 3D NIFTI volume to NRRD format.
+    Volume automatically reordered to RAS orientation as closest to canonical.
+
+    :param path: Path to NIFTI volume file.
+    :type path: str
+    :return: Volume data in NumPy array format and dictionary with metadata (NRRD header).
+    :rtype: Tuple[np.ndarray, dict]
+    :Usage example:
+
+     .. code-block:: python
+
+        import supervisely as sly
+
+        path = "/home/admin/work/volumes/vol_01.nii"
+        data, header = sly.volume.convert_nifti_to_nrrd(path)
+    """
+
+    import nibabel as nib  # pylint: disable=import-error
+
+    orientation_map = {
+        ('R', 'A', 'S'): "right-anterior-superior",
+        ('L', 'P', 'S'): "left-posterior-superior",
+        ('R', 'P', 'I'): "right-posterior-inferior",
+        ('L', 'A', 'I'): "left-anterior-inferior"
+    }
+    nifti = nib.load(path)
+    reordered_to_ras_nifti = nib.as_closest_canonical(nifti)
+    data = reordered_to_ras_nifti.get_fdata()
+    affine = reordered_to_ras_nifti.affine
+    orientation = nib.aff2axcodes(affine)
+    space_directions = affine[:3, :3].tolist()
+    space_origin = affine[:3, 3].tolist()
+    header = {
+        "space": orientation_map.get(orientation, "unknown"),
+        "space directions": space_directions,
+        "space origin": space_origin,
+        "sizes": data.shape,
+        "type": str(data.dtype),
+        "dimension": len(data.shape),
+    }
+    return data, header
+
 
 def is_nifti_file(path: str) -> bool:
     """Check if the file is a NIFTI file.

{supervisely-6.73.321.dist-info → supervisely-6.73.323.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: supervisely
-Version: 6.73.321
+Version: 6.73.323
 Summary: Supervisely Python SDK.
 Home-page: https://github.com/supervisely/supervisely
 Author: Supervisely

{supervisely-6.73.321.dist-info → supervisely-6.73.323.dist-info}/RECORD

@@ -5,7 +5,7 @@ supervisely/function_wrapper.py,sha256=R5YajTQ0GnRp2vtjwfC9hINkzQc0JiyGsu8TER373
 supervisely/sly_logger.py,sha256=z92Vu5hmC0GgTIJO1n6kPDayRW9__8ix8hL6poDZj-Y,6274
 supervisely/tiny_timer.py,sha256=hkpe_7FE6bsKL79blSs7WBaktuPavEVu67IpEPrfmjE,183
 supervisely/annotation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-supervisely/annotation/annotation.py,sha256=5AG1AhebkmiYy2r7nKbz6TjdmCF4tuf9FtqUjLLs7aU,114659
+supervisely/annotation/annotation.py,sha256=x1RizD9DPiwk14Mf8xGvuwPdzx_zI5Zx1CVvmCy_sII,114665
 supervisely/annotation/annotation_transforms.py,sha256=TlVy_gUbM-XH6GbLpZPrAi6pMIGTr7Ow02iSKOSTa-I,9582
 supervisely/annotation/json_geometries_map.py,sha256=nL6AmMhFy02fw9ryBm75plKyOkDh61QdOToSuLAcz_Q,1659
 supervisely/annotation/label.py,sha256=NpHZ5o2H6dI4KiII22o2HpiLXG1yekh-bEy8WvI2Ljg,37498
@@ -565,7 +565,7 @@ supervisely/collection/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3
 supervisely/collection/key_indexed_collection.py,sha256=x2UVlkprspWhhae9oLUzjTWBoIouiWY9UQSS_MozfH0,37643
 supervisely/collection/str_enum.py,sha256=Zp29yFGvnxC6oJRYNNlXhO2lTSdsriU1wiGHj6ahEJE,1250
 supervisely/convert/__init__.py,sha256=ropgB1eebG2bfLoJyf2jp8Vv9UkFujaW3jVX-71ho1g,1353
-supervisely/convert/base_converter.py,sha256=eCFnvyoMI96rWjB5amFPZX2fI_TSdr__ruqxwQIbfFo,18537
+supervisely/convert/base_converter.py,sha256=O2SP4I_Hd0aSn8kbOUocy8orkc_-iD-TQ-z4ieUqabA,18579
 supervisely/convert/converter.py,sha256=tWxTDfFv7hwzQhUQrBxzfr6WP8FUGFX_ewg5T2HbUYo,8959
 supervisely/convert/image/__init__.py,sha256=JEuyaBiiyiYmEUYqdn8Mog5FVXpz0H1zFubKkOOm73I,1395
 supervisely/convert/image/image_converter.py,sha256=8vak8ZoKTN1ye2ZmCTvCZ605-Rw1AFLIEo7bJMfnR68,10426
@@ -634,10 +634,13 @@ supervisely/convert/pointcloud/ply/ply_helper.py,sha256=YfLiV9m6a4NNEMs0J32dmMTL
 supervisely/convert/pointcloud/sly/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 supervisely/convert/pointcloud/sly/sly_pointcloud_converter.py,sha256=r56Rwil-55cRnd0sIePFGrf_xXa-lKQSfwhEUrjOquk,5070
 supervisely/convert/pointcloud/sly/sly_pointcloud_helper.py,sha256=kOluL97FfCFfIvnUE_FeN8iQLMlwdiMR5gayorOGDXw,3968
-supervisely/convert/pointcloud_episodes/__init__.py,sha256=tzrN8kKCpa-0PNp6s1uVIoGse_VKGb45KzCCUSYlH5Y,457
+supervisely/convert/pointcloud_episodes/__init__.py,sha256=LePLQFEjXwhXap2zOY9SVTbW_NMbxKYZKBjBdRLimKE,557
 supervisely/convert/pointcloud_episodes/pointcloud_episodes_converter.py,sha256=qULUzO96BvWgNVmyxSQ0pUPBPG3WHgUJuK_U7Z8NM-g,9428
 supervisely/convert/pointcloud_episodes/bag/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 supervisely/convert/pointcloud_episodes/bag/bag_converter.py,sha256=jzWKXoFUWu11d5WlPfT1hphCubYpq_lhQZmhh07xZdQ,1659
+supervisely/convert/pointcloud_episodes/kitti_360/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+supervisely/convert/pointcloud_episodes/kitti_360/kitti_360_converter.py,sha256=ls3Pgf9WYTtaTzf6nLCL3gMjG6zZ_EAVKE5OJSFAOPc,10033
+supervisely/convert/pointcloud_episodes/kitti_360/kitti_360_helper.py,sha256=EHyJTRfIpUC3lETJOCTI_OY4ddmT0eTFLMMhOvSeCm0,12372
 supervisely/convert/pointcloud_episodes/lyft/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 supervisely/convert/pointcloud_episodes/lyft/lyft_converter.py,sha256=QXreWUJ-QhoWgLPqRxCayatYCCCuSV6Z2XCZKScrD3o,10419
 supervisely/convert/pointcloud_episodes/nuscenes_conv/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -655,11 +658,14 @@ supervisely/convert/video/mot/mot_converter.py,sha256=wXbv-9Psc2uVnhzHuOt5VnRIvS
 supervisely/convert/video/sly/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 supervisely/convert/video/sly/sly_video_converter.py,sha256=S2qif7JFxqIi9VN_ez_iBtoJXpG9W6Ky2k5Er3-DtUo,4418
 supervisely/convert/video/sly/sly_video_helper.py,sha256=D8PgoXpi0y3z-VEqvBLDf_gSUQ2hTL3irrfJyGhaV0Y,6758
-supervisely/convert/volume/__init__.py,sha256=ZXV1GwQlvKY7sZroUU-jiMTkgngk1aimh51nw1onzuc,168
+supervisely/convert/volume/__init__.py,sha256=NjVfOa9uH1BdYvB-RynW6L28x0f_tqL9p7tHSIQ6Sso,245
 supervisely/convert/volume/volume_converter.py,sha256=3jpt2Yn_G4FSP_vHFsJHQfYNQpT7q6ar_sRyr_xrPnA,5335
 supervisely/convert/volume/dicom/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 supervisely/convert/volume/dicom/dicom_converter.py,sha256=__QP8fMAaq_BdWFYh1_nAYT2gpY1WwZzdlDj39YwHhw,3195
 supervisely/convert/volume/dicom/dicom_helper.py,sha256=1EXmxl5Z8Xi3ZkZnfJ4EbiPCVyITSXUc0Cn_oo02pPE,1284
+supervisely/convert/volume/nii/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+supervisely/convert/volume/nii/nii_volume_converter.py,sha256=kI2JmeFuLfLWgYGCEozoaka1QH4TocnfgyN0em6maa0,5946
+supervisely/convert/volume/nii/nii_volume_helper.py,sha256=kzh20fsdeI8efA0vawW0M6Wh48nMlCLzHBQFuSNVFmc,1136
 supervisely/convert/volume/sly/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 supervisely/convert/volume/sly/sly_volume_converter.py,sha256=XmSuxnRqxchG87b244f3h0UHvOt6IkajMquL1drWlCM,5595
 supervisely/convert/volume/sly/sly_volume_helper.py,sha256=gUY0GW3zDMlO2y-zQQG36uoXMrKkKz4-ErM1CDxFCxE,5620
@@ -876,7 +882,7 @@ supervisely/nn/benchmark/visualization/widgets/table/__init__.py,sha256=47DEQpj8
 supervisely/nn/benchmark/visualization/widgets/table/table.py,sha256=atmDnF1Af6qLQBUjLhK18RMDKAYlxnsuVHMSEa5a-e8,4319
 supervisely/nn/inference/__init__.py,sha256=QFukX2ip-U7263aEPCF_UCFwj6EujbMnsgrXp5Bbt8I,1623
 supervisely/nn/inference/cache.py,sha256=q4F7ZRzZghNWSVFClXEIHNMNW4PK6xddYckCFUgyhCo,32027
-supervisely/nn/inference/inference.py,sha256=RJPTCd-y5FtQ234Zdbj7D6stsR3ZpVo8GLpiXXAr2Bg,158665
+supervisely/nn/inference/inference.py,sha256=SqfIgohv0U3USQpHerzkrnfIeC7JKGeQA49Tocliu1k,165877
 supervisely/nn/inference/session.py,sha256=jmkkxbe2kH-lEgUU6Afh62jP68dxfhF5v6OGDfLU62E,35757
 supervisely/nn/inference/video_inference.py,sha256=8Bshjr6rDyLay5Za8IB8Dr6FURMO2R_v7aELasO8pR4,5746
 supervisely/nn/inference/gui/__init__.py,sha256=wCxd-lF5Zhcwsis-wScDA8n1Gk_1O00PKgDviUZ3F1U,221
@@ -1053,7 +1059,7 @@ supervisely/volume/__init__.py,sha256=EBZBY_5mzabXzMUQh5akusIGd16XnX9n8J0jIi_JmW
 supervisely/volume/nrrd_encoder.py,sha256=1lqwwyqxEvctw1ysQ70x4xPSV1uy1g5YcH5CURwL7-c,4084
 supervisely/volume/nrrd_loader.py,sha256=_yqahKcqSRxunHZ5LtnUWIRA7UvIhPKOhAUwYijSGY4,9065
 supervisely/volume/stl_converter.py,sha256=WIMQgHO_u4JT58QdcMXcb_euF1BFhM7D52IVX_0QTxE,6285
-supervisely/volume/volume.py,sha256=-AAZIducizejhXyZWmaytCPLCcF8_vdnXDSTpJb5jIs,24337
+supervisely/volume/volume.py,sha256=7ebCIICqZMwRP3ruRy3PtSeiUpBpSlyRH20VJybBQbI,25828
 supervisely/volume_annotation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 supervisely/volume_annotation/constants.py,sha256=BdFIh56fy7vzLIjt0gH8xP01EIU-qgQIwbSHVUcABCU,569
 supervisely/volume_annotation/plane.py,sha256=wyezAcc8tLp38O44CwWY0wjdQxf3VjRdFLWooCrk-Nw,16301
@@ -1075,9 +1081,9 @@ supervisely/worker_proto/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZ
 supervisely/worker_proto/worker_api_pb2.py,sha256=VQfi5JRBHs2pFCK1snec3JECgGnua3Xjqw_-b3aFxuM,59142
 supervisely/worker_proto/worker_api_pb2_grpc.py,sha256=3BwQXOaP9qpdi0Dt9EKG--Lm8KGN0C5AgmUfRv77_Jk,28940
 supervisely_lib/__init__.py,sha256=7-3QnN8Zf0wj8NCr2oJmqoQWMKKPKTECvjH9pd2S5vY,159
-supervisely-6.73.321.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-supervisely-6.73.321.dist-info/METADATA,sha256=yVJfg3OU_JHg5N-hBOHneb0i5S2tBLYZsVQ9sdn67Co,33596
-supervisely-6.73.321.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
-supervisely-6.73.321.dist-info/entry_points.txt,sha256=U96-5Hxrp2ApRjnCoUiUhWMqijqh8zLR03sEhWtAcms,102
-supervisely-6.73.321.dist-info/top_level.txt,sha256=kcFVwb7SXtfqZifrZaSE3owHExX4gcNYe7Q2uoby084,28
-supervisely-6.73.321.dist-info/RECORD,,
+supervisely-6.73.323.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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+supervisely-6.73.323.dist-info/RECORD,,