subsurface-terra 2025.1.0rc12__py3-none-any.whl → 2025.1.0rc14__py3-none-any.whl

subsurface/_version.py

@@ -17,5 +17,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '2025.1.0rc12'
-__version_tuple__ = version_tuple = (2025, 1, 0, 'rc12')
+__version__ = version = '2025.1.0rc14'
+__version_tuple__ = version_tuple = (2025, 1, 0, 'rc14')

subsurface/core/geological_formats/boreholes/boreholes.py

@@ -91,7 +91,10 @@ class BoreholeSet:
     def get_bottom_coords_for_each_lith(self) -> dict[Hashable, np.ndarray]:
         merged_df = self._merge_vertex_data_arrays_to_dataframe()
         component_lith_arrays = {}
-        for lith, group in merged_df.groupby('component lith'):
+        groupby = merged_df.groupby('lith_ids')
+        if groupby.ngroups == 0:
+            raise ValueError("No components found")
+        for lith, group in groupby:
             lith = int(lith)
             first_vertices = group.groupby('well_id').last().reset_index()
             array = first_vertices[['X', 'Y', 'Z']].values

subsurface/core/structs/base_structures/structured_data.py

@@ -131,12 +131,29 @@ class StructuredData:
     def values(self) -> np.ndarray:
         return self.data[self.active_data_array_name].values
 
+    _bounds: Tuple[float, float, float, float, float, float] = None
+
     @property
     def bounds(self):
+        if self._bounds is not None:
+            return self._bounds
+
         array_: xr.DataArray = self.data[self.active_data_array_name]
-        bounds = self._get_bounds(array_)
+        bounds = self._get_bounds_from_coord(array_)
         return bounds
 
+    @bounds.setter
+    def bounds(self, bounds: Tuple[float, float, float, float, float, float]):
+        """
+        Set the bounds of the structured data. This is useful for defining the
+        spatial extent of the data in a structured grid.
+
+        Args:
+            bounds (Tuple[float, float, float, float, float, float]): A tuple containing
+                the minimum and maximum values for each dimension (xmin, xmax, ymin, ymax, zmin, zmax).
+        """
+        self._bounds = bounds
+
     @property
     def shape(self):
         return self.active_data_array.shape
@@ -146,7 +163,7 @@ class StructuredData:
         return self.data[self.active_data_array_name]
 
     @staticmethod
-    def _get_bounds(xr_obj: xr.DataArray):
+    def _get_bounds_from_coord(xr_obj: xr.DataArray):
         bounds = {}
         for coord in xr_obj.coords:
             bounds[coord] = (xr_obj[coord].min().item(), xr_obj[coord].max().item())

subsurface/modules/reader/mesh/_trimesh_reader.py

@@ -47,7 +47,7 @@ def load_with_trimesh(path_to_file_or_buffer, file_type: Optional[str] = None,
         case TriMeshTransformations.RIGHT_HANDED_Z_UP_Y_REVERSED:
             # * Forward Z Up Y
             transform=np.array([
-                    [1, 0, 0, 0],
+                    [-1, 0, 0, 0],
                     [0, 0, 1, 0],
                     [0, 1, 0, 0],
                     [0, 0, 0, 1],
@@ -109,6 +109,10 @@ class LoadWithTrimesh:
             # If there's already an image reference in the material, let the user know
             if hasattr(material, 'image') and material.image is not None:
                 print("  -> Material already has an image:", material.image)
+            
+            if geometry.visual.uv is None:
+                raise ValueError("Geometry does not have UV coordinates for texture mapping, despite having a material."
+                                 "This can also happen if the geometry is given in quads instead of triangles.")
         else:
             print("No material found or no 'material' attribute on this geometry.")
 

{subsurface_terra-2025.1.0rc12.dist-info → subsurface_terra-2025.1.0rc14.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: subsurface_terra
-Version: 2025.1.0rc12
+Version: 2025.1.0rc14
 Summary: Subsurface data types and utilities. This version is the one used by Terranigma Solutions. Please feel free to take anything in this repository for the original one.
 Home-page: https://softwareunderground.github.io/subsurface
 Author: Software Underground

{subsurface_terra-2025.1.0rc12.dist-info → subsurface_terra-2025.1.0rc14.dist-info}/RECORD

@@ -1,5 +1,5 @@
 subsurface/__init__.py,sha256=0D2rCUem3fiHsXFXXSmwheLiPS4cXxEdfWdFBj0b-cY,930
-subsurface/_version.py,sha256=D_1QY4RtsEm2Eew8rPYqG7jASO3oDCF7p_cXgYN2Qzg,550
+subsurface/_version.py,sha256=6hCz-0xeTsPVqYirvA5x7rupXsfeGqd4ZcT7_v8NHgo,550
 subsurface/optional_requirements.py,sha256=Wg36RqxzPiLtN-3qSg5K9QVEeXCB0-EjSzHERAoO8EE,2883
 subsurface/api/__init__.py,sha256=E3R1fNn_d5XQdlZyjtzBcH_bYRzAvOc3xV38qFLqbZY,369
 subsurface/api/interfaces/__init__.py,sha256=rqUtJyMLicobcyhmr74TepjmUQAEmlazKT3vjV_n3aA,6
@@ -11,7 +11,7 @@ subsurface/core/geological_formats/__init__.py,sha256=jOyPsC3ZEMFljo9SGk0ym7cmBZ
 subsurface/core/geological_formats/fault.py,sha256=Zldf9VT4Gzo0NWe_UvBf5kOgxZtg2T9eWaWPqxeffWw,1547
 subsurface/core/geological_formats/boreholes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 subsurface/core/geological_formats/boreholes/_combine_trajectories.py,sha256=U5VribebcMAag0DOKnna983g1BXAGLKCddGra2g3Nos,5246
-subsurface/core/geological_formats/boreholes/boreholes.py,sha256=Q7KBYIk9M4-SZjDOVx5dMp8DnHBo4VTFrJ4jAKCmrJ8,5256
+subsurface/core/geological_formats/boreholes/boreholes.py,sha256=bWGEPMFHPVyGO8Kv3uBo9U8_MLXlEEkdraXx86eURJY,5364
 subsurface/core/geological_formats/boreholes/collars.py,sha256=o1I8bS0XqWa2fS0n6XZVKXsuBHknXO2Z_5sdlFc_GAE,750
 subsurface/core/geological_formats/boreholes/survey.py,sha256=aaENR0ksT_lK0BYR7HL73KNZ44eo3Ag353xQdVcLOz0,16219
 subsurface/core/reader_helpers/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -23,7 +23,7 @@ subsurface/core/structs/base_structures/__init__.py,sha256=VhMcVjc0pWT8G2IAoKcFe
 subsurface/core/structs/base_structures/_liquid_earth_mesh.py,sha256=e5hIJOv7GrufLlNlR4xBFuMduZYUHR12BAE1B1GuY3o,5850
 subsurface/core/structs/base_structures/_unstructured_data_constructor.py,sha256=aqQwAXs9mUqDoMfadEdKDZTirHrkgRjcmmSwqwxaXjQ,2741
 subsurface/core/structs/base_structures/base_structures_enum.py,sha256=l9uovc8JWskHmT8tgSE8p4Ep4RjZi5jh_xuZCH-s8HM,96
-subsurface/core/structs/base_structures/structured_data.py,sha256=iaVmCMIwkxiGXtZJxKZRWFhsFGC-2ZW_B9QTufHzBwY,9917
+subsurface/core/structs/base_structures/structured_data.py,sha256=QLTlfQLrXnMvGm6EkrTvQq9m5eqHKwIG8nYGuM1jwHI,10592
 subsurface/core/structs/base_structures/unstructured_data.py,sha256=_cB64U0d8VlWgod0eHNluLmtLQZKLOwJYkmdtqYocXs,12904
 subsurface/core/structs/structured_elements/__init__.py,sha256=wQ8z6vioC98TNwnqMHlDMVFJ1yOKsmlVa6kHL1SOfZQ,43
 subsurface/core/structs/structured_elements/octree_mesh.py,sha256=vI30DW46oGP_h_3v85MiFmwFDoKh1HWdVBATdTmC-yA,240
@@ -45,7 +45,7 @@ subsurface/modules/reader/faults/faults.py,sha256=s144Gq0tFvjSUkB66dB86kYjW2l2e1
 subsurface/modules/reader/geo_object/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 subsurface/modules/reader/mesh/_GOCAD_mesh.py,sha256=_MwNy4iVMGnemvT01hhB-nbCc8a1r8ETEAkD-AWcBz4,3304
 subsurface/modules/reader/mesh/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-subsurface/modules/reader/mesh/_trimesh_reader.py,sha256=D28DrNuC8QDZpmmctjf6KRHWeHPidvavn2V8NIF9roo,17549
+subsurface/modules/reader/mesh/_trimesh_reader.py,sha256=Skg1D52RuG70Ov02OrMwUdUG_3zbQ6QeS4XlMPOM5Qw,17844
 subsurface/modules/reader/mesh/csv_mesh_reader.py,sha256=0iXYg-JOLUg7yH6Rw6qCoxXvKh0hOUTwjYxbhSlGfGM,1969
 subsurface/modules/reader/mesh/dxf_reader.py,sha256=JDhzFRE46sdwMGBB8enHNluH07ohqt6LhgLHiSQRL-I,6525
 subsurface/modules/reader/mesh/glb_reader.py,sha256=dierR9AYM5Q2szLuemfLlM_JcPRNtDrD5fpF8zNjBS8,1118
@@ -89,8 +89,8 @@ subsurface/modules/writer/to_rex/material_encoder.py,sha256=zGlqF9X_Civ9VvtGwo-I
 subsurface/modules/writer/to_rex/mesh_encoder.py,sha256=6TBtJhYJEAMEBHxQkbweXrJO1jIUx1ClM8l5ajVCrLc,6443
 subsurface/modules/writer/to_rex/to_rex.py,sha256=njsm2d3e69pRVfF_TOC_hexvXPmgNTZdJvhbnXcvyIo,3800
 subsurface/modules/writer/to_rex/utils.py,sha256=HEpJ95LjHOK24ePpmLpPP5uFyv6i_kN3AWh031q-1Uc,379
-subsurface_terra-2025.1.0rc12.dist-info/licenses/LICENSE,sha256=GSXh9K5TZauM89BeGbYg07oST_HMhOTiZoEGaUeKBtA,11606
-subsurface_terra-2025.1.0rc12.dist-info/METADATA,sha256=-JXdGryaR_k9plZ3-3GoFQKbYYS2kVZfe_4oH6haLkw,7094
-subsurface_terra-2025.1.0rc12.dist-info/WHEEL,sha256=SmOxYU7pzNKBqASvQJ7DjX3XGUF92lrGhMb3R6_iiqI,91
-subsurface_terra-2025.1.0rc12.dist-info/top_level.txt,sha256=f32R_tUSf83CfkpB4vjv5m2XcD8TmDX9h7F4rnEXt5A,11
-subsurface_terra-2025.1.0rc12.dist-info/RECORD,,
+subsurface_terra-2025.1.0rc14.dist-info/licenses/LICENSE,sha256=GSXh9K5TZauM89BeGbYg07oST_HMhOTiZoEGaUeKBtA,11606
+subsurface_terra-2025.1.0rc14.dist-info/METADATA,sha256=RrT1uQXG_FQJNwVpkyTo1ozaLYC3bPVZr1mU_SulRHA,7094
+subsurface_terra-2025.1.0rc14.dist-info/WHEEL,sha256=wXxTzcEDnjrTwFYjLPcsW_7_XihufBwmpiBeiXNBGEA,91
+subsurface_terra-2025.1.0rc14.dist-info/top_level.txt,sha256=f32R_tUSf83CfkpB4vjv5m2XcD8TmDX9h7F4rnEXt5A,11
+subsurface_terra-2025.1.0rc14.dist-info/RECORD,,

{subsurface_terra-2025.1.0rc12.dist-info → subsurface_terra-2025.1.0rc14.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (79.0.1)
+Generator: setuptools (80.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any