ssi-analysis-result-parsers 0.0.7__py3-none-any.whl → 0.0.8__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. ssi_analysis_result_parsers/Spyogenes_parser.py +16 -16
  2. {ssi_analysis_result_parsers-0.0.7.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/METADATA +1 -1
  3. {ssi_analysis_result_parsers-0.0.7.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/RECORD +8 -7
  4. test_input/Spyogenes/emm_typing/test6.emm.blast.tsv +45 -0
  5. {ssi_analysis_result_parsers-0.0.7.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/WHEEL +0 -0
  6. {ssi_analysis_result_parsers-0.0.7.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/entry_points.txt +0 -0
  7. {ssi_analysis_result_parsers-0.0.7.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/licenses/LICENSE +0 -0
  8. {ssi_analysis_result_parsers-0.0.7.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/top_level.txt +0 -0
ssi_analysis_result_parsers/Spyogenes_parser.py CHANGED
@@ -85,6 +85,7 @@ def extract_emm_type(emm_blast_tsv: Path):
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  .groupby("extended_sstart")
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  .first()
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  )
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+ print(blast_df_unique)
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  if blast_df_unique.shape[0] == 1:
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  emm_typing_results["EMM_type"] = blast_df_unique.iloc[0]["qseqid"][3:]
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  if (
@@ -122,17 +123,16 @@ def extract_emm_type(emm_blast_tsv: Path):
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  notes.append(
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  f"ENN{blast_df_unique.iloc[1]['qseqid'][3:]} with pident {round(blast_df_unique.iloc[1]['pident'],2)} and length {blast_df_unique.iloc[1]['length']}/{blast_df_unique.iloc[1]['qlen']}"
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  )
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-
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- emm_maintype = blast_df_unique.iloc[0]["qseqid"][3:].split(".")[0]
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- mrp_maintype = blast_df_unique.iloc[1]["qseqid"][3:].split(".")[0]
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- if (
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- mrp_maintype in emm_types_in_emm_plus_mrp_operons
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- or emm_maintype in mrp_types_in_emm_plus_mrp_operons
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- ):
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- emm_typing_results["MRP_type"] = emm_typing_results["EMM_type"]
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- emm_typing_results["EMM_type"] = emm_typing_results["ENN_type"]
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- emm_typing_results["ENN_type"] = "-"
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- notes.append(f"EMM redesignated due to known MRP+EMM operon")
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+ emm_maintype = blast_df_unique.iloc[0]["qseqid"][3:].split(".")[0]
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+ mrp_maintype = blast_df_unique.iloc[1]["qseqid"][3:].split(".")[0]
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+ if (
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+ mrp_maintype in emm_types_in_emm_plus_mrp_operons
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+ or emm_maintype in mrp_types_in_emm_plus_mrp_operons
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+ ):
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+ emm_typing_results["MRP_type"] = emm_typing_results["EMM_type"]
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+ emm_typing_results["EMM_type"] = emm_typing_results["ENN_type"]
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+ emm_typing_results["ENN_type"] = "-"
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+ notes.append(f"EMM redesignated due to known MRP+EMM operon")
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  elif blast_df_unique.shape[0] == 3:
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  emm_typing_results["MRP_type"] = blast_df_unique.iloc[0]["qseqid"][3:]
@@ -176,7 +176,7 @@ class SpyogenesResults(core.PipelineResults):
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  def from_tool_paths(cls, emm_blast_tsv: Path, sample_name=None):
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  """
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  Alternative constructor for initializing results for single sample,
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- Initializes LegionellaResults instance provided paths to outputs from tools (legionella sbt and lag1 presence blast)
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+ Initializes SpyogenesResults instance provided paths to outputs from tools (legionella sbt and lag1 presence blast)
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  """
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  gas_results = cls.summary(emm_blast_tsv=emm_blast_tsv)
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  return cls({sample_name: gas_results})
@@ -185,7 +185,7 @@ class SpyogenesResults(core.PipelineResults):
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  def from_tool_paths_dict(cls, file_paths: dict):
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  """
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  Alternative constructor for initializing results for multiple samples,
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- Initializes LegionellaResults instance by providing a dictionary of paths to outputs from tools (legionella sbt and lag1 presence blast)
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+ Initializes SpyogenesResults instance by providing a dictionary of paths to outputs from tools (legionella sbt and lag1 presence blast)
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  """
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  results_dict = {}
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  for sample_name, path_dict in file_paths.items():
@@ -197,7 +197,7 @@ class SpyogenesResults(core.PipelineResults):
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  def from_tool_paths_dataframe(cls, file_paths_df: pandas.DataFrame):
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  """
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  Alternative constructor for initializing results for multiple samples,
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- Initializes LegionellaResults instance by providing a DataFrame of paths to outputs from tools (legionella sbt and lag1 presence blast)
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+ Initializes SpyogenesResults instance by providing a DataFrame of paths to outputs from tools (legionella sbt and lag1 presence blast)
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  """
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  file_paths = file_paths_df.to_dict(orient="index")
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  results_dict = {}
@@ -210,7 +210,7 @@ class SpyogenesResults(core.PipelineResults):
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  def from_tool_paths_tsv(cls, tool_paths_tsv: Path):
211
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  """
212
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  Alternative constructor for initializing results for multiple samples,
213
- Initializes LegionellaResults instance by providing a tsv-file with paths to outputs from tools (legionella sbt and lag1 presence blast)
213
+ Initializes SpyogenesResults instance by providing a tsv-file with paths to outputs from tools (legionella sbt and lag1 presence blast)
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  """
215
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  file_paths_df = pandas.read_csv(tool_paths_tsv, sep="\t")
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  file_paths_df.set_index("sample_name", inplace=True, drop=True)
@@ -226,7 +226,7 @@ class SpyogenesResults(core.PipelineResults):
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  return results_dict
227
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  def __repr__(self):
229
- return f"< Legionella analysis results object. {len(self.results_df)} samples with {len(self.results_df.columns)} result variables > "
229
+ return f"< Spyogenes analysis results object. {len(self.results_df)} samples with {len(self.results_df.columns)} result variables > "
230
230
 
231
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  # %% ../nbs/31_Spyogenes_parser.ipynb 9
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  @call_parse
{ssi_analysis_result_parsers-0.0.7.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ssi_analysis_result_parsers
3
- Version: 0.0.7
3
+ Version: 0.0.8
4
4
  Summary: TODO
5
5
  Home-page: https://github.com/thej-ssi/ssi_analysis_result_parsers
6
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  Author: Thor Bech Johannesen
{ssi_analysis_result_parsers-0.0.7.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/RECORD RENAMED
@@ -1,5 +1,5 @@
1
1
  ssi_analysis_result_parsers/Legionella_parser.py,sha256=nBOPrelzCMh8IMEDje6jtU9sz92sEyuxddBe0MntTfo,6879
2
- ssi_analysis_result_parsers/Spyogenes_parser.py,sha256=gPnYOK12YwovT7TDBrA2cBI4Y9HbnP5HJdkdTUWql6k,11234
2
+ ssi_analysis_result_parsers/Spyogenes_parser.py,sha256=fTud7InvlPPPH1YHt5wcK1sGPZQlgNvIyN28qhcJLi8,11295
3
3
  ssi_analysis_result_parsers/__init__.py,sha256=R9xOYoYrWKcfO5zvTeGC3m_eDNOvxMd8CocQs2tLufo,22
4
4
  ssi_analysis_result_parsers/_modidx.py,sha256=kz1oGnDbstzvo_tNuFiX5wkhfhNmiqSiCkwBnzplRU0,14895
5
5
  ssi_analysis_result_parsers/blast_parser.py,sha256=EBqWlx8bDlaSzqAZomiUGnT2DGaaA-L7ukny7SEJbpk,7915
@@ -8,7 +8,7 @@ ssi_analysis_result_parsers/hello_world.py,sha256=jpN94sqYuNHqUbUZMCJ35qGY5iLPB_
8
8
  ssi_analysis_result_parsers/some_string.py,sha256=JwmAXKbX_JgY8UGh4FAu5-7ZjezcAEhq4Q2B73pWp2M,923
9
9
  ssi_analysis_result_parsers/config/config.default.env,sha256=Zt6bfPbVV3rYCksoebX1ruAdFgeD9wqAnKDtswhtJJM,1390
10
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  ssi_analysis_result_parsers/config/config.default.yaml,sha256=3qgUrUtQpxrzYv7WQaHsvz9dQB0RALKNU0idxv7oRqM,460
11
- ssi_analysis_result_parsers-0.0.7.dist-info/licenses/LICENSE,sha256=p6aTb6QIfqyZ2Uux2VjV4F2zthdUSHZOjB4mfwGc7fo,1094
11
+ ssi_analysis_result_parsers-0.0.8.dist-info/licenses/LICENSE,sha256=p6aTb6QIfqyZ2Uux2VjV4F2zthdUSHZOjB4mfwGc7fo,1094
12
12
  test_input/.DS_Store,sha256=sdTEvl9DTKPHNPYYjMqDepX7q7ZETlonk21tGEuWLao,6148
13
13
  test_input/empty_file.txt,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
14
14
  test_input/Legionella/batch_parser_file_paths.tsv,sha256=AikBS_Ez1xO3UrEQ19AY3z6drBDdMAiSGK66NLeyYj4,356
@@ -26,14 +26,15 @@ test_input/Spyogenes/emm_typing/test2.mga.blast.tsv,sha256=pMYSJY69JmcA28TOQpwFb
26
26
  test_input/Spyogenes/emm_typing/test3.emm.blast.tsv,sha256=Z5MV_PMF6GjQokkxP4w30G0LZIZSwrX2Umfa57OzjL0,5768
27
27
  test_input/Spyogenes/emm_typing/test4.emm.blast.tsv,sha256=tM9-iXa3STGyR0_DpIYfgETZBirxz4-uX5f0rq4Ni-A,4989
28
28
  test_input/Spyogenes/emm_typing/test5.emm.blast.tsv,sha256=gNAtzRdO1nBUwCH4Az57-_-s4aXoWgjZW14iA3Tjp-4,8347
29
+ test_input/Spyogenes/emm_typing/test6.emm.blast.tsv,sha256=mSySwORBVGGXVoSGECoYVw9OVDcUVaExMXVtb5DAwqE,11698
29
30
  test_input/blast_parser/allele_matches_test.tsv,sha256=7vfQAOxz3fKc84HtxN9eoCyQoF9G8MFd-GKH3Krw_Cs,233035
30
31
  test_input/blast_parser/empty_gene_presence_absense_test.tsv,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
31
32
  test_input/blast_parser/gene_presence_absence_test.tsv,sha256=qCvMkBC-1GuXx83RDhnGAuuBXAlIq4e_IW0rrNVn2yA,1447
32
33
  test_output/output_with_sample_name.tsv,sha256=NQG7WaxczuWCCsX2a9MUxCCYpbuAirz9gw08OLdEdUo,41
33
34
  test_output/test.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
34
35
  test_output/test_batch_output.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
35
- ssi_analysis_result_parsers-0.0.7.dist-info/METADATA,sha256=Qz8MXGIdWgPOchl9sxp8P5n77fskykzW4sSv1MzL48k,2765
36
- ssi_analysis_result_parsers-0.0.7.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
37
- ssi_analysis_result_parsers-0.0.7.dist-info/entry_points.txt,sha256=noBLlB4hLmYcqns7KdQPVURO27kZ_zWMsPHYkRlBGEE,631
38
- ssi_analysis_result_parsers-0.0.7.dist-info/top_level.txt,sha256=3q56bBc2Wv2a6ZQ1l_9m66vot2-Qu6tM9tDr3QQ8auM,81
39
- ssi_analysis_result_parsers-0.0.7.dist-info/RECORD,,
36
+ ssi_analysis_result_parsers-0.0.8.dist-info/METADATA,sha256=6TO2iB06jnXSGOlf5Jpd4gnNrNdmSekVYeirLnUTNSs,2765
37
+ ssi_analysis_result_parsers-0.0.8.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
38
+ ssi_analysis_result_parsers-0.0.8.dist-info/entry_points.txt,sha256=noBLlB4hLmYcqns7KdQPVURO27kZ_zWMsPHYkRlBGEE,631
39
+ ssi_analysis_result_parsers-0.0.8.dist-info/top_level.txt,sha256=3q56bBc2Wv2a6ZQ1l_9m66vot2-Qu6tM9tDr3QQ8auM,81
40
+ ssi_analysis_result_parsers-0.0.8.dist-info/RECORD,,
test_input/Spyogenes/emm_typing/test6.emm.blast.tsv ADDED
@@ -0,0 +1,45 @@
1
+ EMM156.0 GAS-2025-0367_2_61.3538 85.556 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCATG---TTGATGTTGTGCTT-T-C-AGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 5.79e-46 178
2
+ EMM156.1 GAS-2025-0367_2_61.3538 85.000 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 2.69e-44 172
3
+ EMM156.2 GAS-2025-0367_2_61.3538 86.111 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 1.24e-47 183
4
+ EMM156.3 GAS-2025-0367_2_61.3538 85.556 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 5.79e-46 178
5
+ EMM156.4 GAS-2025-0367_2_61.3538 85.000 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 2.69e-44 172
6
+ EMM203.3 GAS-2025-0367_2_61.3538 96.111 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 5.51e-81 294
7
+ EMM203.4 GAS-2025-0367_2_61.3538 96.667 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.18e-82 300
8
+ EMM203.5 GAS-2025-0367_2_61.3538 93.333 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.20e-72 267
9
+ EMM236.0 GAS-2025-0367_2_61.3538 93.333 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.20e-72 267
10
+ EMM236.1 GAS-2025-0367_2_61.3538 93.889 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 2.58e-74 272
11
+ EMM236.3 GAS-2025-0367_2_61.3538 93.889 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 2.58e-74 272
12
+ EMM28.0 GAS-2025-0367_2_61.3538 100.000 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 1.17e-92 333
13
+ EMM28.1 GAS-2025-0367_2_61.3538 98.788 165 180 1 165 202215 202379 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAA 5.51e-81 294
14
+ EMM28.10 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
15
+ EMM28.11 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
16
+ EMM28.12 GAS-2025-0367_2_61.3538 98.333 180 180 1 180 202215 202391 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTA---AAGAAGAAGAACCTAGGTATAAA 1.52e-86 313
17
+ EMM28.13 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
18
+ EMM28.14 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
19
+ EMM28.15 GAS-2025-0367_2_61.3538 98.333 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 1.18e-87 316
20
+ EMM28.16 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
21
+ EMM28.17 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
22
+ EMM28.18 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
23
+ EMM28.19 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
24
+ EMM28.2 GAS-2025-0367_2_61.3538 99.390 164 180 1 164 202215 202378 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGA 4.26e-82 298
25
+ EMM28.20 GAS-2025-0367_2_61.3538 98.889 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 2.53e-89 322
26
+ EMM28.21 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
27
+ EMM28.22 GAS-2025-0367_2_61.3538 98.765 162 180 1 162 202215 202376 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAA 2.56e-79 289
28
+ EMM28.23 GAS-2025-0367_2_61.3538 98.889 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 2.53e-89 322
29
+ EMM28.24 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
30
+ EMM28.25 GAS-2025-0367_2_61.3538 100.000 175 180 1 175 202215 202389 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATA 7.02e-90 324
31
+ EMM28.26 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
32
+ EMM28.27 GAS-2025-0367_2_61.3538 98.889 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 2.53e-89 322
33
+ EMM28.28 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
34
+ EMM28.29 GAS-2025-0367_2_61.3538 98.361 183 180 1 180 202215 202397 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCATTG 3.27e-88 318
35
+ EMM28.3 GAS-2025-0367_2_61.3538 99.394 165 180 1 165 202215 202379 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAA 1.18e-82 300
36
+ EMM28.30 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
37
+ EMM28.31 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
38
+ EMM28.32 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
39
+ EMM28.33 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
40
+ EMM28.4 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
41
+ EMM28.5 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
42
+ EMM28.6 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
43
+ EMM28.7 GAS-2025-0367_2_61.3538 99.383 162 180 1 162 202215 202376 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAA 5.51e-81 294
44
+ EMM28.8 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
45
+ EMM28.9 GAS-2025-0367_2_61.3538 98.333 180 180 1 180 202215 202391 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCT---AAAGAAGAAGAACCTAGGTATAAA 1.52e-86 313