ssi-analysis-result-parsers 0.0.6__py3-none-any.whl → 0.0.8__py3-none-any.whl

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Files changed (22) hide show
  1. ssi_analysis_result_parsers/Legionella_parser.py +4 -10
  2. ssi_analysis_result_parsers/Spyogenes_parser.py +252 -0
  3. ssi_analysis_result_parsers/__init__.py +1 -1
  4. ssi_analysis_result_parsers/_modidx.py +22 -2
  5. {ssi_analysis_result_parsers-0.0.6.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/METADATA +1 -1
  6. ssi_analysis_result_parsers-0.0.8.dist-info/RECORD +40 -0
  7. {ssi_analysis_result_parsers-0.0.6.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/entry_points.txt +2 -0
  8. test_input/Spyogenes/batch_parser_file_paths.tsv +5 -0
  9. test_input/Spyogenes/emm_typing/Mga.fasta +24 -0
  10. test_input/Spyogenes/emm_typing/emm_clusters.txt +28 -0
  11. test_input/Spyogenes/emm_typing/test1.emm.blast.tsv +41 -0
  12. test_input/Spyogenes/emm_typing/test1.mga.blast.tsv +23 -0
  13. test_input/Spyogenes/emm_typing/test2.emm.blast.tsv +145 -0
  14. test_input/Spyogenes/emm_typing/test2.mga.blast.tsv +46 -0
  15. test_input/Spyogenes/emm_typing/test3.emm.blast.tsv +22 -0
  16. test_input/Spyogenes/emm_typing/test4.emm.blast.tsv +19 -0
  17. test_input/Spyogenes/emm_typing/test5.emm.blast.tsv +32 -0
  18. test_input/Spyogenes/emm_typing/test6.emm.blast.tsv +45 -0
  19. ssi_analysis_result_parsers-0.0.6.dist-info/RECORD +0 -28
  20. {ssi_analysis_result_parsers-0.0.6.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/WHEEL +0 -0
  21. {ssi_analysis_result_parsers-0.0.6.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/licenses/LICENSE +0 -0
  22. {ssi_analysis_result_parsers-0.0.6.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/top_level.txt +0 -0
ssi_analysis_result_parsers/Legionella_parser.py CHANGED
@@ -71,7 +71,7 @@ class LegionellaResults(core.PipelineResults):
71
71
  Alternative constructor for initializing results for single sample,
72
72
  Initializes LegionellaResults instance provided paths to outputs from tools (legionella sbt and lag1 presence blast)
73
73
  """
74
- legionella_results = cls.legionella_summary(
74
+ legionella_results = cls.summary(
75
75
  legionella_sbt_results_tsv=legionella_sbt_results_tsv,
76
76
  lag1_blast_tsv=lag1_blast_tsv,
77
77
  )
@@ -85,7 +85,7 @@ class LegionellaResults(core.PipelineResults):
85
85
  """
86
86
  results_dict = {}
87
87
  for sample_name, path_dict in file_paths.items():
88
- legionella_results = cls.legionella_summary(
88
+ legionella_results = cls.summary(
89
89
  legionella_sbt_results_tsv=Path(path_dict["sbt_results"]),
90
90
  lag1_blast_tsv=Path(path_dict["lag1_blast_results"]),
91
91
  )
@@ -101,7 +101,7 @@ class LegionellaResults(core.PipelineResults):
101
101
  file_paths = file_paths_df.to_dict(orient="index")
102
102
  results_dict = {}
103
103
  for sample_name, path_dict in file_paths.items():
104
- legionella_results = cls.legionella_summary(
104
+ legionella_results = cls.summary(
105
105
  legionella_sbt_results_tsv=Path(path_dict["sbt_results"]),
106
106
  lag1_blast_tsv=Path(path_dict["lag1_blast_results"]),
107
107
  )
@@ -120,9 +120,7 @@ class LegionellaResults(core.PipelineResults):
120
120
  return cls.from_tool_paths_dataframe(file_paths_df)
121
121
 
122
122
  @staticmethod
123
- def legionella_summary(
124
- legionella_sbt_results_tsv: Path, lag1_blast_tsv: Path
125
- ) -> dict:
123
+ def summary(legionella_sbt_results_tsv: Path, lag1_blast_tsv: Path) -> dict:
126
124
  sbt_results_dict = extract_legionella_sbt(
127
125
  legionella_sbt_results_tsv=legionella_sbt_results_tsv
128
126
  )
@@ -149,10 +147,8 @@ def legionella_parser(
149
147
  lag_1_blast_output: Path = None, # Path to output from lag1_blast. Generated with blastn -query lag-1.fasta -subject assembly.fasta -outfmt "6 qseqid sseqid pident length qlen qstart qend sstart send sseq evalue bitscore"
150
148
  output_file: Path = None, # Path to output tsv
151
149
  sample_name: str = None,
152
- config_file: str = None, # config file to set env vars from
153
150
  ) -> None:
154
151
  """ """
155
- # config = core.get_config(config_file) # Set env vars and get config variables
156
152
  legionella_results = LegionellaResults.from_tool_paths(
157
153
  legionella_sbt_results_tsv=legionella_sbt_file,
158
154
  lag1_blast_tsv=lag_1_blast_output,
@@ -165,10 +161,8 @@ def legionella_parser(
165
161
  def legionella_batch_parser(
166
162
  file_path_tsv: Path = None, # Path to tsv containing file paths to the outputs from tools to be parsed. Must contain headers "sample_name", "sbt_results", and "lag1_blast_results"
167
163
  output_file: Path = None, # Path to output tsv
168
- config_file: str = None, # config file to set env vars from
169
164
  ) -> None:
170
165
  """ """
171
- # config = core.get_config(config_file) # Set env vars and get config variables
172
166
  legionella_results = LegionellaResults.from_tool_paths_tsv(
173
167
  tool_paths_tsv=file_path_tsv
174
168
  )
ssi_analysis_result_parsers/Spyogenes_parser.py ADDED
@@ -0,0 +1,252 @@
1
+ # AUTOGENERATED! DO NOT EDIT! File to edit: ../nbs/31_Spyogenes_parser.ipynb.
2
+
3
+ # %% auto 0
4
+ __all__ = ['extract_emm_type', 'SpyogenesResults', 'Spyogenes_parser', 'Spyogenes_batch_parser']
5
+
6
+ # %% ../nbs/31_Spyogenes_parser.ipynb 3
7
+ # standard libs
8
+ import os
9
+ import re
10
+
11
+ # Common to template
12
+ # add into settings.ini, requirements, package name is python-dotenv, for conda build ensure `conda config --add channels conda-forge`
13
+ import dotenv # for loading config from .env files, https://pypi.org/project/python-dotenv/
14
+ import envyaml # Allows to loads env vars into a yaml file, https://github.com/thesimj/envyaml
15
+ import fastcore # To add functionality related to nbdev development, https://github.com/fastai/fastcore/
16
+ from fastcore import (
17
+ test,
18
+ )
19
+ from fastcore.script import (
20
+ call_parse,
21
+ ) # for @call_parse, https://fastcore.fast.ai/script
22
+ import json # for nicely printing json and yaml
23
+
24
+ # import functions from core module (optional, but most likely needed).
25
+ from ssi_analysis_result_parsers import (
26
+ core,
27
+ blast_parser,
28
+ )
29
+
30
+ # from ssi_analysis_result_parsers.blast_parser import extract_presence_absence
31
+
32
+ # Project specific libraries
33
+ from pathlib import Path
34
+ import pandas
35
+ import numpy
36
+ import sys
37
+
38
+ # %% ../nbs/31_Spyogenes_parser.ipynb 6
39
+ def extract_emm_type(emm_blast_tsv: Path):
40
+ """
41
+ with open(emm_cluster_file) as f:
42
+ emm_clusters = {}
43
+ for line in f:
44
+ line = line.rstrip("\n").split()
45
+ for ele in line:
46
+ emm_clusters[ele] = line[0]
47
+
48
+ try:
49
+ mga_blast_df = pandas.read_csv(mga_blast_tsv, sep='\t', header = None)
50
+ mga_blast_df.columns = "qseqid sseqid pident length qlen qstart qend sstart send evalue bitscore".split(' ')
51
+ mga_blast_df.sort_values(by=['bitscore'], ascending= False).iloc[0]
52
+ mga_pos = mga_blast_df.iloc[0]['sstart']
53
+
54
+ except pandas.errors.EmptyDataError:
55
+ print(f"No mga matches found in assembly")
56
+ """
57
+
58
+ emm_types_in_emm_plus_mrp_operons = [] ### to update
59
+ mrp_types_in_emm_plus_mrp_operons = ["156"] ### to update
60
+ emm_blast_tsv = Path(emm_blast_tsv)
61
+ emm_typing_results = {"EMM_type": "-", "ENN_type": "-", "MRP_type": "-"}
62
+ if not emm_blast_tsv.exists():
63
+ emm_typing_results["emm_typing_notes"] = "No blast output found for EMM genes"
64
+ return emm_typing_results
65
+ else:
66
+ try:
67
+ blast_df = pandas.read_csv(emm_blast_tsv, sep="\t", header=None)
68
+ except pandas.errors.EmptyDataError:
69
+ emm_typing_results["emm_typing_notes"] = (
70
+ "Empty blast output, no EMM genes detected"
71
+ )
72
+ return emm_typing_results
73
+ notes = []
74
+ blast_df.columns = "qseqid sseqid pident length qlen qstart qend sstart send sseq evalue bitscore".split(
75
+ " "
76
+ )
77
+ blast_df["plen"] = blast_df["length"] / blast_df["qlen"] * 100
78
+ blast_df["extended_sstart"] = numpy.where(
79
+ blast_df["sstart"] < blast_df["send"],
80
+ round((blast_df["sstart"] - blast_df["qstart"] + 1) / 100),
81
+ round((blast_df["send"] - blast_df["qstart"] + 1) / 100),
82
+ )
83
+ blast_df_unique = (
84
+ blast_df.sort_values(by=["bitscore"], ascending=False)
85
+ .groupby("extended_sstart")
86
+ .first()
87
+ )
88
+ print(blast_df_unique)
89
+ if blast_df_unique.shape[0] == 1:
90
+ emm_typing_results["EMM_type"] = blast_df_unique.iloc[0]["qseqid"][3:]
91
+ if (
92
+ blast_df_unique.iloc[0]["length"] < 180
93
+ or blast_df_unique.iloc[0]["pident"] < 100
94
+ ):
95
+ emm_typing_results["EMM_type"] += "*"
96
+ notes.append(
97
+ f"EMM{blast_df_unique.iloc[0]['qseqid'][3:]} with {round(blast_df_unique.iloc[0]['pident'],2)} and length {blast_df_unique.iloc[0]['length']}/{blast_df_unique.iloc[0]['qlen']}"
98
+ )
99
+ else:
100
+ if blast_df_unique.iloc[0]["sstart"] < blast_df_unique.iloc[0]["send"]:
101
+ blast_df_unique = blast_df_unique.sort_values(by=["sstart"], ascending=True)
102
+ else:
103
+ blast_df_unique = blast_df_unique.sort_values(
104
+ by=["sstart"], ascending=False
105
+ )
106
+ if blast_df_unique.shape[0] == 2:
107
+ emm_typing_results["EMM_type"] = blast_df_unique.iloc[0]["qseqid"][3:]
108
+ if (
109
+ blast_df_unique.iloc[0]["length"] < 180
110
+ or blast_df_unique.iloc[0]["pident"] < 100
111
+ ):
112
+ emm_typing_results["EMM_type"] += "*"
113
+ notes.append(
114
+ f"EMM{blast_df_unique.iloc[0]['qseqid'][3:]} with pident {round(blast_df_unique.iloc[0]['pident'],2)} and length {blast_df_unique.iloc[0]['length']}/{blast_df_unique.iloc[0]['qlen']}"
115
+ )
116
+
117
+ emm_typing_results["ENN_type"] = blast_df_unique.iloc[1]["qseqid"][3:]
118
+ if (
119
+ blast_df_unique.iloc[1]["length"] < 180
120
+ or blast_df_unique.iloc[1]["pident"] < 100
121
+ ):
122
+ emm_typing_results["ENN_type"] += "*"
123
+ notes.append(
124
+ f"ENN{blast_df_unique.iloc[1]['qseqid'][3:]} with pident {round(blast_df_unique.iloc[1]['pident'],2)} and length {blast_df_unique.iloc[1]['length']}/{blast_df_unique.iloc[1]['qlen']}"
125
+ )
126
+ emm_maintype = blast_df_unique.iloc[0]["qseqid"][3:].split(".")[0]
127
+ mrp_maintype = blast_df_unique.iloc[1]["qseqid"][3:].split(".")[0]
128
+ if (
129
+ mrp_maintype in emm_types_in_emm_plus_mrp_operons
130
+ or emm_maintype in mrp_types_in_emm_plus_mrp_operons
131
+ ):
132
+ emm_typing_results["MRP_type"] = emm_typing_results["EMM_type"]
133
+ emm_typing_results["EMM_type"] = emm_typing_results["ENN_type"]
134
+ emm_typing_results["ENN_type"] = "-"
135
+ notes.append(f"EMM redesignated due to known MRP+EMM operon")
136
+
137
+ elif blast_df_unique.shape[0] == 3:
138
+ emm_typing_results["MRP_type"] = blast_df_unique.iloc[0]["qseqid"][3:]
139
+ if (
140
+ blast_df_unique.iloc[0]["length"] < 180
141
+ or blast_df_unique.iloc[0]["pident"] < 100
142
+ ):
143
+ emm_typing_results["MRP_type"] += "*"
144
+ notes.append(
145
+ f"MRP{blast_df_unique.iloc[0]['qseqid'][3:]} with pident {round(blast_df_unique.iloc[0]['pident'],2)} and length {blast_df_unique.iloc[0]['length']}/{blast_df_unique.iloc[0]['qlen']}"
146
+ )
147
+
148
+ emm_typing_results["EMM_type"] = blast_df_unique.iloc[1]["qseqid"][3:]
149
+ if (
150
+ blast_df_unique.iloc[1]["length"] < 180
151
+ or blast_df_unique.iloc[1]["pident"] < 100
152
+ ):
153
+ emm_typing_results["EMM_type"] += "*"
154
+ notes.append(
155
+ f"EMM{blast_df_unique.iloc[1]['qseqid'][3:]} with pident {round(blast_df_unique.iloc[1]['pident'],2)} and length {blast_df_unique.iloc[1]['length']}/{blast_df_unique.iloc[1]['qlen']}"
156
+ )
157
+
158
+ emm_typing_results["ENN_type"] = blast_df_unique.iloc[2]["qseqid"][3:]
159
+ if (
160
+ blast_df_unique.iloc[2]["length"] < 180
161
+ or blast_df_unique.iloc[2]["pident"] < 100
162
+ ):
163
+ emm_typing_results["ENN_type"] += "*"
164
+ notes.append(
165
+ f"ENN{blast_df_unique.iloc[2]['qseqid'][3:]} with pident {round(blast_df_unique.iloc[2]['pident'],2)} and length {blast_df_unique.iloc[2]['length']}/{blast_df_unique.iloc[2]['qlen']}"
166
+ )
167
+ elif blast_df_unique.shape[0] == 0:
168
+ notes.append("No blast hits found for EMM genes")
169
+ emm_typing_results["emm_typing_notes"] = ", ".join(notes)
170
+ return emm_typing_results
171
+
172
+
173
+ class SpyogenesResults(core.PipelineResults):
174
+
175
+ @classmethod
176
+ def from_tool_paths(cls, emm_blast_tsv: Path, sample_name=None):
177
+ """
178
+ Alternative constructor for initializing results for single sample,
179
+ Initializes SpyogenesResults instance provided paths to outputs from tools (legionella sbt and lag1 presence blast)
180
+ """
181
+ gas_results = cls.summary(emm_blast_tsv=emm_blast_tsv)
182
+ return cls({sample_name: gas_results})
183
+
184
+ @classmethod
185
+ def from_tool_paths_dict(cls, file_paths: dict):
186
+ """
187
+ Alternative constructor for initializing results for multiple samples,
188
+ Initializes SpyogenesResults instance by providing a dictionary of paths to outputs from tools (legionella sbt and lag1 presence blast)
189
+ """
190
+ results_dict = {}
191
+ for sample_name, path_dict in file_paths.items():
192
+ gas_results = cls.summary(emm_blast_tsv=Path(path_dict["emm_results"]))
193
+ results_dict[sample_name] = gas_results
194
+ return cls(results_dict)
195
+
196
+ @classmethod
197
+ def from_tool_paths_dataframe(cls, file_paths_df: pandas.DataFrame):
198
+ """
199
+ Alternative constructor for initializing results for multiple samples,
200
+ Initializes SpyogenesResults instance by providing a DataFrame of paths to outputs from tools (legionella sbt and lag1 presence blast)
201
+ """
202
+ file_paths = file_paths_df.to_dict(orient="index")
203
+ results_dict = {}
204
+ for sample_name, path_dict in file_paths.items():
205
+ results = cls.summary(emm_blast_tsv=Path(path_dict["emm_results"]))
206
+ results_dict[sample_name] = results
207
+ return cls(results_dict)
208
+
209
+ @classmethod
210
+ def from_tool_paths_tsv(cls, tool_paths_tsv: Path):
211
+ """
212
+ Alternative constructor for initializing results for multiple samples,
213
+ Initializes SpyogenesResults instance by providing a tsv-file with paths to outputs from tools (legionella sbt and lag1 presence blast)
214
+ """
215
+ file_paths_df = pandas.read_csv(tool_paths_tsv, sep="\t")
216
+ file_paths_df.set_index("sample_name", inplace=True, drop=True)
217
+ return cls.from_tool_paths_dataframe(file_paths_df)
218
+
219
+ @staticmethod
220
+ def summary(emm_blast_tsv: Path) -> dict:
221
+ emm_results = extract_emm_type(emm_blast_tsv=emm_blast_tsv)
222
+ results_dict = emm_results
223
+ # results_dict = core.update_results_dict(sbt_results_dict, lag1_blast_dict, old_duplicate_key_prefix="SBT: ")
224
+ if results_dict is None:
225
+ return {}
226
+ return results_dict
227
+
228
+ def __repr__(self):
229
+ return f"< Spyogenes analysis results object. {len(self.results_df)} samples with {len(self.results_df.columns)} result variables > "
230
+
231
+ # %% ../nbs/31_Spyogenes_parser.ipynb 9
232
+ @call_parse
233
+ def Spyogenes_parser(
234
+ emm_blast_tsv: Path = None, # Blast output from blasting EMM and emm-like genes
235
+ output_file: Path = None, # Path to output tsv
236
+ sample_name: str = None,
237
+ ) -> None:
238
+ """ """
239
+ results = SpyogenesResults.from_tool_paths(
240
+ legionella_sbt_results_tsv=emm_blast_tsv, sample_name=sample_name
241
+ )
242
+ results.write_tsv(output_file=output_file)
243
+
244
+
245
+ @call_parse
246
+ def Spyogenes_batch_parser(
247
+ file_path_tsv: Path = None, # Path to tsv containing file paths to the outputs from tools to be parsed. Must contain headers "sample_name", "sbt_results", and "lag1_blast_results"
248
+ output_file: Path = None, # Path to output tsv
249
+ ) -> None:
250
+ """ """
251
+ results = SpyogenesResults.from_tool_paths_tsv(tool_paths_tsv=file_path_tsv)
252
+ results.write_tsv(output_file)
ssi_analysis_result_parsers/__init__.py CHANGED
@@ -1 +1 @@
1
- __version__ = "0.0.5"
1
+ __version__ = "0.0.7"
ssi_analysis_result_parsers/_modidx.py CHANGED
@@ -17,14 +17,34 @@ d = { 'settings': { 'branch': 'main',
17
17
  'ssi_analysis_result_parsers/Legionella_parser.py'),
18
18
  'ssi_analysis_result_parsers.Legionella_parser.LegionellaResults.from_tool_paths_tsv': ( 'legionella_parser.html#legionellaresults.from_tool_paths_tsv',
19
19
  'ssi_analysis_result_parsers/Legionella_parser.py'),
20
- 'ssi_analysis_result_parsers.Legionella_parser.LegionellaResults.legionella_summary': ( 'legionella_parser.html#legionellaresults.legionella_summary',
21
- 'ssi_analysis_result_parsers/Legionella_parser.py'),
20
+ 'ssi_analysis_result_parsers.Legionella_parser.LegionellaResults.summary': ( 'legionella_parser.html#legionellaresults.summary',
21
+ 'ssi_analysis_result_parsers/Legionella_parser.py'),
22
22
  'ssi_analysis_result_parsers.Legionella_parser.extract_legionella_sbt': ( 'legionella_parser.html#extract_legionella_sbt',
23
23
  'ssi_analysis_result_parsers/Legionella_parser.py'),
24
24
  'ssi_analysis_result_parsers.Legionella_parser.legionella_batch_parser': ( 'legionella_parser.html#legionella_batch_parser',
25
25
  'ssi_analysis_result_parsers/Legionella_parser.py'),
26
26
  'ssi_analysis_result_parsers.Legionella_parser.legionella_parser': ( 'legionella_parser.html#legionella_parser',
27
27
  'ssi_analysis_result_parsers/Legionella_parser.py')},
28
+ 'ssi_analysis_result_parsers.Spyogenes_parser': { 'ssi_analysis_result_parsers.Spyogenes_parser.SpyogenesResults': ( 'spyogenes_parser.html#spyogenesresults',
29
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py'),
30
+ 'ssi_analysis_result_parsers.Spyogenes_parser.SpyogenesResults.__repr__': ( 'spyogenes_parser.html#spyogenesresults.__repr__',
31
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py'),
32
+ 'ssi_analysis_result_parsers.Spyogenes_parser.SpyogenesResults.from_tool_paths': ( 'spyogenes_parser.html#spyogenesresults.from_tool_paths',
33
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py'),
34
+ 'ssi_analysis_result_parsers.Spyogenes_parser.SpyogenesResults.from_tool_paths_dataframe': ( 'spyogenes_parser.html#spyogenesresults.from_tool_paths_dataframe',
35
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py'),
36
+ 'ssi_analysis_result_parsers.Spyogenes_parser.SpyogenesResults.from_tool_paths_dict': ( 'spyogenes_parser.html#spyogenesresults.from_tool_paths_dict',
37
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py'),
38
+ 'ssi_analysis_result_parsers.Spyogenes_parser.SpyogenesResults.from_tool_paths_tsv': ( 'spyogenes_parser.html#spyogenesresults.from_tool_paths_tsv',
39
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py'),
40
+ 'ssi_analysis_result_parsers.Spyogenes_parser.SpyogenesResults.summary': ( 'spyogenes_parser.html#spyogenesresults.summary',
41
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py'),
42
+ 'ssi_analysis_result_parsers.Spyogenes_parser.Spyogenes_batch_parser': ( 'spyogenes_parser.html#spyogenes_batch_parser',
43
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py'),
44
+ 'ssi_analysis_result_parsers.Spyogenes_parser.Spyogenes_parser': ( 'spyogenes_parser.html#spyogenes_parser',
45
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py'),
46
+ 'ssi_analysis_result_parsers.Spyogenes_parser.extract_emm_type': ( 'spyogenes_parser.html#extract_emm_type',
47
+ 'ssi_analysis_result_parsers/Spyogenes_parser.py')},
28
48
  'ssi_analysis_result_parsers.blast_parser': { 'ssi_analysis_result_parsers.blast_parser.allele_matches': ( 'blast_parser.html#allele_matches',
29
49
  'ssi_analysis_result_parsers/blast_parser.py'),
30
50
  'ssi_analysis_result_parsers.blast_parser.extract_allele_matches': ( 'blast_parser.html#extract_allele_matches',
{ssi_analysis_result_parsers-0.0.6.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ssi_analysis_result_parsers
3
- Version: 0.0.6
3
+ Version: 0.0.8
4
4
  Summary: TODO
5
5
  Home-page: https://github.com/thej-ssi/ssi_analysis_result_parsers
6
6
  Author: Thor Bech Johannesen
ssi_analysis_result_parsers-0.0.8.dist-info/RECORD ADDED
@@ -0,0 +1,40 @@
1
+ ssi_analysis_result_parsers/Legionella_parser.py,sha256=nBOPrelzCMh8IMEDje6jtU9sz92sEyuxddBe0MntTfo,6879
2
+ ssi_analysis_result_parsers/Spyogenes_parser.py,sha256=fTud7InvlPPPH1YHt5wcK1sGPZQlgNvIyN28qhcJLi8,11295
3
+ ssi_analysis_result_parsers/__init__.py,sha256=R9xOYoYrWKcfO5zvTeGC3m_eDNOvxMd8CocQs2tLufo,22
4
+ ssi_analysis_result_parsers/_modidx.py,sha256=kz1oGnDbstzvo_tNuFiX5wkhfhNmiqSiCkwBnzplRU0,14895
5
+ ssi_analysis_result_parsers/blast_parser.py,sha256=EBqWlx8bDlaSzqAZomiUGnT2DGaaA-L7ukny7SEJbpk,7915
6
+ ssi_analysis_result_parsers/core.py,sha256=8CzFMDrGJ24D9aoIebLsG8tx-OxvYJod1cxBITqNfaY,12258
7
+ ssi_analysis_result_parsers/hello_world.py,sha256=jpN94sqYuNHqUbUZMCJ35qGY5iLPB_emucgnDGDUk_U,1895
8
+ ssi_analysis_result_parsers/some_string.py,sha256=JwmAXKbX_JgY8UGh4FAu5-7ZjezcAEhq4Q2B73pWp2M,923
9
+ ssi_analysis_result_parsers/config/config.default.env,sha256=Zt6bfPbVV3rYCksoebX1ruAdFgeD9wqAnKDtswhtJJM,1390
10
+ ssi_analysis_result_parsers/config/config.default.yaml,sha256=3qgUrUtQpxrzYv7WQaHsvz9dQB0RALKNU0idxv7oRqM,460
11
+ ssi_analysis_result_parsers-0.0.8.dist-info/licenses/LICENSE,sha256=p6aTb6QIfqyZ2Uux2VjV4F2zthdUSHZOjB4mfwGc7fo,1094
12
+ test_input/.DS_Store,sha256=sdTEvl9DTKPHNPYYjMqDepX7q7ZETlonk21tGEuWLao,6148
13
+ test_input/empty_file.txt,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
14
+ test_input/Legionella/batch_parser_file_paths.tsv,sha256=AikBS_Ez1xO3UrEQ19AY3z6drBDdMAiSGK66NLeyYj4,356
15
+ test_input/Legionella/lag-1_blast.tsv,sha256=MN5QL_iBn9gQ8VTYEcTnT0JwKgpkD8G15-QFOrSWxkU,1133
16
+ test_input/Legionella/lag-1_blast_2.tsv,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
17
+ test_input/Legionella/test.sbt.tsv,sha256=ibhaH3is2dxHaABPvR2QM2HAq9bKOs1AwOTmrwSrcd8,168
18
+ test_input/Legionella/test2.sbt.tsv,sha256=uJyVGHKXPmnvaXSt_84_buATOyl79H6vZjkWRitca9k,170
19
+ test_input/Spyogenes/batch_parser_file_paths.tsv,sha256=PzJO_X6jUdVz4Z6BU2NI_7H1oclIDXkfLPhR9Mj1X8E,231
20
+ test_input/Spyogenes/emm_typing/Mga.fasta,sha256=WvDUm_tiUfAfcBAh9fwOHc8F0WkvjaxNErzUsMNV1w4,1630
21
+ test_input/Spyogenes/emm_typing/emm_clusters.txt,sha256=ggYNeQjAIIokLHX6vXc7ER6PIIwbhQR5OahD3cxu88c,3479
22
+ test_input/Spyogenes/emm_typing/test1.emm.blast.tsv,sha256=Xncpf4b0WEtbxBNKYaA84yPxwzyWG8S8QIJ7ifP-lIk,10759
23
+ test_input/Spyogenes/emm_typing/test1.mga.blast.tsv,sha256=M6h8d-ssfq_MhpE6a8zxG5tgfcgNsGV_7znkNOiGM14,1750
24
+ test_input/Spyogenes/emm_typing/test2.emm.blast.tsv,sha256=8DMwst09OTyRx6czeso0dsp2ECoK0nmIqYtdjfJZ7dE,36944
25
+ test_input/Spyogenes/emm_typing/test2.mga.blast.tsv,sha256=pMYSJY69JmcA28TOQpwFb5ZwLipUQeSq14_qT4wxcTY,3534
26
+ test_input/Spyogenes/emm_typing/test3.emm.blast.tsv,sha256=Z5MV_PMF6GjQokkxP4w30G0LZIZSwrX2Umfa57OzjL0,5768
27
+ test_input/Spyogenes/emm_typing/test4.emm.blast.tsv,sha256=tM9-iXa3STGyR0_DpIYfgETZBirxz4-uX5f0rq4Ni-A,4989
28
+ test_input/Spyogenes/emm_typing/test5.emm.blast.tsv,sha256=gNAtzRdO1nBUwCH4Az57-_-s4aXoWgjZW14iA3Tjp-4,8347
29
+ test_input/Spyogenes/emm_typing/test6.emm.blast.tsv,sha256=mSySwORBVGGXVoSGECoYVw9OVDcUVaExMXVtb5DAwqE,11698
30
+ test_input/blast_parser/allele_matches_test.tsv,sha256=7vfQAOxz3fKc84HtxN9eoCyQoF9G8MFd-GKH3Krw_Cs,233035
31
+ test_input/blast_parser/empty_gene_presence_absense_test.tsv,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
32
+ test_input/blast_parser/gene_presence_absence_test.tsv,sha256=qCvMkBC-1GuXx83RDhnGAuuBXAlIq4e_IW0rrNVn2yA,1447
33
+ test_output/output_with_sample_name.tsv,sha256=NQG7WaxczuWCCsX2a9MUxCCYpbuAirz9gw08OLdEdUo,41
34
+ test_output/test.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
35
+ test_output/test_batch_output.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
36
+ ssi_analysis_result_parsers-0.0.8.dist-info/METADATA,sha256=6TO2iB06jnXSGOlf5Jpd4gnNrNdmSekVYeirLnUTNSs,2765
37
+ ssi_analysis_result_parsers-0.0.8.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
38
+ ssi_analysis_result_parsers-0.0.8.dist-info/entry_points.txt,sha256=noBLlB4hLmYcqns7KdQPVURO27kZ_zWMsPHYkRlBGEE,631
39
+ ssi_analysis_result_parsers-0.0.8.dist-info/top_level.txt,sha256=3q56bBc2Wv2a6ZQ1l_9m66vot2-Qu6tM9tDr3QQ8auM,81
40
+ ssi_analysis_result_parsers-0.0.8.dist-info/RECORD,,
{ssi_analysis_result_parsers-0.0.6.dist-info → ssi_analysis_result_parsers-0.0.8.dist-info}/entry_points.txt RENAMED
@@ -1,6 +1,8 @@
1
1
  [console_scripts]
2
2
  blast_parser_allele_matches = ssi_analysis_result_parsers.blast_parser:allele_matches
3
3
  blast_parser_presence_absence = ssi_analysis_result_parsers.blast_parser:presence_absence
4
+ get_Spyogenes_results = ssi_analysis_result_parsers.Spyogenes_parser:Spyogenes_parser
5
+ get_Spyogenes_results_batch = ssi_analysis_result_parsers.Spyogenes_parser:Spyogenes_batch_parser
4
6
  get_leg_results = ssi_analysis_result_parsers.Legionella_parser:legionella_parser
5
7
  get_leg_results_batch = ssi_analysis_result_parsers.Legionella_parser:legionella_batch_parser
6
8
 
test_input/Spyogenes/batch_parser_file_paths.tsv ADDED
@@ -0,0 +1,5 @@
1
+ sample_name emm_results
2
+ sample_1 test_input/Spyogenes/emm_typing/test1.emm.blast.tsv
3
+ sample_2 test_input/Spyogenes/emm_typing/test2.emm.blast.tsv
4
+ sample_3 test_input/files_that_does_not_exist.tsv
5
+ sample_4 test_input/empty_file.txt
test_input/Spyogenes/emm_typing/Mga.fasta ADDED
@@ -0,0 +1,24 @@
1
+ >Mga
2
+ ATGCATGTAAGTAAATTGTTTACTAGCCAACAATGGAGAGAATTGAAACTGATCTCATATTTAACAGAAA
3
+ ACTCCAGTGCTATCGGAGTTAAAGATAAGGAGCTTAGCAAGGCTCTCAATATTTCCATGTTAACATTACA
4
+ GTCATGCCTCACTAATATGCAGTTTATGAAAGAAGTAGGTGGAATTACCTACAAAGACGGCTATATTAAC
5
+ ATTTGGTATCACCAGTGTTGTGGGCTACAAGAGGTCTATCAAAAAGCTCTTCGAGAATCGCCTTCTTTGA
6
+ AATTACTGGAGCTTTTGTTTTTCAGAGACTTTAGTTCCTTAGAAGAGTTAGCTGAAGAGCTGTTTGTCAG
7
+ TTTATCTACCCTCAAACGCCTCATCAAAAAAACCAACACTTACTTGTCTCATACCTTTGCTATTAGTATC
8
+ GTGACAAGTCCAGTGCAGGTATCAGGAGATGAGAGGCAAATCCGCCTGTTTTACCTCAAGTATTTTTCAG
9
+ AAGCCTATAAAATCTCAGAATGGCCATTTGGGGACATTTTAAACCTGAAAAACTGTGAACGCCTATTGAG
10
+ CTTATTGATCAAAGAAGTAGATGTCAAAGTTCATTTTACACTATTTCAGCACTTAAAAATCTTAAGTGGT
11
+ GTCAACTTGATCCGTTACTACAAGGGGTATTCTTGCAGTTATAACAATAAAAAAACCAGTCACCGTTTTT
12
+ CTCAACTCATCCAACATTCCTCAGAAATCCAGGATCTTTCTCGCTTGTTCTACCTCAAATTTGGGTTACA
13
+ TCTCGACGAGTATACCATAGCTGAAATGTTTTCTAACCATCTTAACGACAAGCTAGAAATTGGCTGTGCT
14
+ TTTGAGATTATCGATCAAGACCCAACATCAGGAGGCAGACAAGTAACCAACTGGATCCATCTATTAGATG
15
+ AGATGGAAATCAAGCTCAATCTCAGCATCACCAATAAATACGAAGTTGCCGTAACCCTCCATAACGCTTC
16
+ GGTGTTAAACGAAGAAGACATTACAGCCAATTATTTGCTGTTTGATTATAAAAAGAGTTACCTGAACTTT
17
+ TACCAAAAAGAACACCCTCGTATCTATGAGCCCTTTGTGACAAGTGTCGAGAAGCTGATGCAGGCAGATA
18
+ ATGCTCAAGTTAGCAAAGAATTGATCAATCAGCTCACTTATTGTTTCTTTATCACCTGGGAAAATAGTTT
19
+ CTTAAAAGTAAATCAAAAAGATGAAAAAGTAAGACTCCTAGTGATAGAGAGAAGTTACAATAGTGTCGGT
20
+ AATTTTTTGAAAAAGTACATCGGTGAGTTTTTCAGCATTACTAATTTTGATGAGTTAGATTGTTTGACAA
21
+ TTGATCTAGTAGAGATTGAAAAACAGTACGATGTTATCGTGACAGACGTTATGGTGGGTAAAAGCGAAGA
22
+ GTTAGAGATTTTCTTTTTCTACAAGATGATCCCAGAAGCTATTATTGATAGATTAAACGAATTTTTGAAC
23
+ GTTAGTTTCACAGATAACAATGTTATGGTCAAAAACCTCGGAGCCCCTTCCTCTTCAAAATCTCATAGCG
24
+ ACAAAGAGGTACAAAAGCCAGAAAAGCCAGACAATTCAGTTAAACAAGCAACATCATCATAG
test_input/Spyogenes/emm_typing/emm_clusters.txt ADDED
@@ -0,0 +1,28 @@
1
+ EMM_SG1 60 169 78 176 165 4 77
2
+ EMM_SG2 60 92 76 13 117 110 106 27 44 113 90 104 68 168 102 73 114 124 2 77 112 232 84 126 89 109 22 28 8 88 50 183 9 49 151 118 15
3
+ EMM_SG3 76 44 113 25 103 87 79 209 58 82 66 90 168 9 73
4
+ EMM_SG4 59 65 99 85 42 81 185 191
5
+ EMM_SG5 63 94 11 177 75 48
6
+ EMM_SG6 137 230 225 70 93 224 192 64 56 223 43 83 119 116
7
+ EMM_SG7 230 225 108 33 86 93 41 83 52 98 80 101 43 91 178 53 162 186 119 6 97 184 147
8
+ EMM_SG8 41 18 207 54 179 218 19 6 36 71 100 115 32 197 217 123 5 105 74 14 233 122 97 57 1 227 238 29
9
+ EMM_SG9 24 stG3251 111 221 57 3 12 229 39 55 stg1750 222 95
10
+ ENN_SG1 74.0 74.1 74.2 79.0 79.1 79.2 80 81 82 83 84 85 86 87 88.0 88.1 90 91.0 91.1 91.2 92.0 92.1 94 95.0 95.1 97 98 99 100 101 102.0 102.1 102.2 105.0 105.1 107 108 110.0 110.1 110.2 113.0 113.1 114 115 116.0 116.1 118 119 120 121 122 123 124 125 126 127.0 127.1 129.0 129.1 129.2
11
+ ENN_SG2 132.0 132.1 132.2 132.3 136 137 138 139 140 141.0 141.1 141.2 144 145 146 148.0 148.1 148.2 150 152 153 154 155.0 155.1 157
12
+ ENN_SG3 2.0 2.1 3 5.0 5.1 5.2 5.3 5.4 10 11 13 14.0 14.1 16 20 22 23 26.0 26.1 28 29 30 31 32 33.0 33.1 33.2 34 35 36 37.0 37.1 38 40.0 40.1 40.2 40.3 40.4 44 45 48.0 48.1 51 52.0 52.1 52.2 52.3 55 56 57 58.0 58.1 60 61 62 68 354
13
+ ENN_SG4 12 17.0 17.1 19 21 47 63 64.0 64.1 66 67 69 70 71 356
14
+ ENN_SG5 230 231.0 231.1 232.0 232.1 234 235 237.0 237.1 237.2 240 241 242 243 244 245 246 247 248 249 250 251 162 163 164 165 166 167 168.0 168.1 170 171 172 173 174 175 176 177 179.0 179.1 181 212.0 212.1 213 214 215 216.0 216.1 218 219 333 344.0 344.1 345.0 345.1 346
15
+ ENN_SG6 178 182 183.0 183.1 183.2 183.3 187.0 187.1 189 190 191 192 193 194.0 194.1 196 197 198 199.0 199.1 201 202 203.0 203.1 203.2 203.3 205 206 207 208 209 210
16
+ ENN_SG7 252.0 252.1 252.2 254 255 256 257 259 220 221 222 260 261 262 263 264 265 266 267 268 269 271 272 274 275 276 277 278 308 316 317 347 348
17
+ ENN_SG8 223 224 225 226 227 291 292 294 295.0 295.1 297 318 319 320 321 322 323 324 325.0 325.1 327.0 327.1 336.0 336.1 336.2 337.0 337.1 339 340 341 342
18
+ ENN_SG9 284.0 284.1 286 287 288 289 290 270 273 279 299 300.0 300.1 302 303 304 305.0 305.1 307 309 310 311 312 313 314 315 355 293 298 329 330 331.0 331.1
19
+ MRP_SG1 193.0 193.1 193.2 193.3 193.4 193.5 193.6 193.7 193.8 193.9 193.10 193.11 195.0 195.1 195.2 195.3 195.4 195.5 195.6 195.7 195.8 195.9 199 201 202 203 205.0 205.1 205.2 209 211 213 214 221 223 226 232 235 236 237 240 241 242 243 244 245.0 245.1 245.2 249 254 255 56.0 256.1 260 261 264 268.0 268.1 270 275
20
+ MRP_SG2 216.0 216.1 217 219 229 230.0 230.1 246 247 248 257 258 262 265 267.0 267.1 278 279 280 281 282.0 282.1 285 286 287 288 289 152 158 161 164
21
+ MRP_SG3 253 271 272 273 274 284 290 121 128 138 160 165 166
22
+ MRP_SG4 178 179.0 179.1 179.2 182 187 188 189 190 191 192 171 172 173 174 176.0 176.1 176.2 177
23
+ MRP_SG5 115.0 115.1 115.2 115.3 117 118 119 122 123 124.0 124.1 126 127 129 131 132 133 136.0 136.1 137 139 140 141 144 145 146.0 146.1 149 150 151 153 154 155.0 155.1 156 159 162 163 167 169 170
24
+ MRP_SG6 2 3 5.0 5.1 6 7 8.0 8.1 8.3 11.0 11.1 11.2 14 16 17 19 20.0 20.1 22 23 25 28
25
+ MRP_SG7 24 26 27 29 30 31.0 31.1 33 34.0 34.1 36 37.0 37.1 39 40 41 42 43.0 43.1 45.0 45.1 46 48 49 50 52 53 54
26
+ MRP_SG8 88 89.0 89.1 89.2 89.3 91 93 94.0 94.1 96 97 98 99 100 101 102 103 104 105.0 105.1 107 108 109 83.0 83.1
27
+ MRP_SG9 55 56 57 58 59 61.0 61.1 62 63 64.0 64.1 66 67 68 69 70 71 72.0 72.1 72.3 75 76 77 78 79 80.0 80.1 82 85 86.0 86.1
28
+ MRP_SG10 291 292 293.0 293.1 295 296 297 298 299
test_input/Spyogenes/emm_typing/test1.emm.blast.tsv ADDED
@@ -0,0 +1,41 @@
1
+ EMM149.0 GAS-2025-0339_29_67.1302 85.405 185 180 1 180 52027 52209 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATGAAGCAGCTTCTGGAACTTCTGTAAATAATAGATCTTCTAAAAGCGTAGAATCATTTA-AATATGAT-GCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAAAAAATTAACGCAGAAGAAGAAAAAAATAAA 3.47e-48 185
2
+ EMM149.3 GAS-2025-0339_29_67.1302 84.239 184 180 1 180 52027 52209 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATGAAGCAGCTTCTGGAACTTCTGTAAATAATAGATCTTCTAAAAGCGTAGAATCATTTAAATATGAT-GCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAAAAAATTAACGCAGAAGAAGAAAAAAATAAA 7.52e-45 174
3
+ EMM149.5 GAS-2025-0339_29_67.1302 84.865 185 180 1 180 52027 52209 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATGAAGCAGCTTCTGGAACTTCTGTAAATAATAGATCTTCTAAAAGCGTAGAATCATTTA-AATATGAT-GCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAAAAAATTAACGCAGAAGAAGAAAAAAATAAA 1.62e-46 180
4
+ EMM159.0 GAS-2025-0339_29_67.1302 97.778 180 180 1 180 52027 52206 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATGAAGCAGCTTCTGGAACTTCTGTAAATAATAGATCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAAAAAATTAACGCAGAAGAAGAAAAAAAT 5.49e-86 311
5
+ EMM159.1 GAS-2025-0339_29_67.1302 95.000 180 180 1 180 52027 52206 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATGAAGCAGCTTCTGGAACTTCTGTAAATAATAGATCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAAAAAATTAACGCAGAAGAAGAAAAAAAT 1.20e-77 283
6
+ EMM159.2 GAS-2025-0339_29_67.1302 97.222 180 180 1 180 52027 52206 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATGAAGCAGCTTCTGGAACTTCTGTAAATAATAGATCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAAAAAATTAACGCAGAAGAAGAAAAAAAT 2.56e-84 305
7
+ EMM159.3 GAS-2025-0339_29_67.1302 95.000 180 180 1 180 52027 52206 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATGAAGCAGCTTCTGGAACTTCTGTAAATAATAGATCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAAAAAATTAACGCAGAAGAAGAAAAAAAT 1.20e-77 283
8
+ EMM159.4 GAS-2025-0339_29_67.1302 95.000 180 180 1 180 52027 52206 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATGAAGCAGCTTCTGGAACTTCTGTAAATAATAGATCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAAAAAATTAACGCAGAAGAAGAAAAAAAT 1.20e-77 283
9
+ EMM209.0 GAS-2025-0339_29_67.1302 80.874 183 180 1 179 50143 50325 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 7.63e-35 141
10
+ EMM209.1 GAS-2025-0339_29_67.1302 80.874 183 180 1 179 50143 50325 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 7.63e-35 141
11
+ EMM209.2 GAS-2025-0339_29_67.1302 80.328 183 180 1 179 50143 50325 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 3.55e-33 135
12
+ EMM209.3 GAS-2025-0339_29_67.1302 80.328 183 180 1 179 50143 50325 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 3.55e-33 135
13
+ EMM79.0 GAS-2025-0339_29_67.1302 83.784 185 180 1 180 50142 50325 AGGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGG-CTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 9.73e-44 171
14
+ EMM79.1 GAS-2025-0339_29_67.1302 84.865 185 180 1 180 50142 50325 AGGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGG-CTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 4.49e-47 182
15
+ EMM79.2 GAS-2025-0339_29_67.1302 83.152 184 180 1 179 50143 50325 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGG-CTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 1.63e-41 163
16
+ EMM79.3 GAS-2025-0339_29_67.1302 82.065 184 180 1 179 50143 50325 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGG-CTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 3.52e-38 152
17
+ EMM79.4 GAS-2025-0339_29_67.1302 82.609 184 180 1 179 50143 50325 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGG-CTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 7.57e-40 158
18
+ EMM79.5 GAS-2025-0339_29_67.1302 84.239 184 180 1 179 50143 50325 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGG-CTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGG 7.52e-45 174
19
+ EMM87.0 GAS-2025-0339_29_67.1302 100.000 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 1.17e-92 333
20
+ EMM87.1 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
21
+ EMM87.10 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
22
+ EMM87.11 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
23
+ EMM87.13 GAS-2025-0339_29_67.1302 98.333 180 180 1 180 50143 50319 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCC---AGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAG 1.53e-86 313
24
+ EMM87.14 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
25
+ EMM87.15 GAS-2025-0339_29_67.1302 96.667 180 180 1 180 50143 50316 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCC------CCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAA 5.53e-81 294
26
+ EMM87.16 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
27
+ EMM87.17 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
28
+ EMM87.18 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
29
+ EMM87.19 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
30
+ EMM87.2 GAS-2025-0339_29_67.1302 99.425 174 180 1 174 50143 50316 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAA 1.18e-87 316
31
+ EMM87.20 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
32
+ EMM87.21 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
33
+ EMM87.22 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
34
+ EMM87.23 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
35
+ EMM87.3 GAS-2025-0339_29_67.1302 89.552 201 180 1 180 50143 50343 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGGCATGATTATGATAAGTTA 3.40e-63 235
36
+ EMM87.4 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
37
+ EMM87.5 GAS-2025-0339_29_67.1302 98.889 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 2.54e-89 322
38
+ EMM87.6 GAS-2025-0339_29_67.1302 99.425 174 180 1 174 50143 50316 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAA 1.18e-87 316
39
+ EMM87.7 GAS-2025-0339_29_67.1302 93.750 192 180 1 180 50143 50334 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTCTGGCATGATTAT 5.57e-76 278
40
+ EMM87.8 GAS-2025-0339_29_67.1302 99.444 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 5.45e-91 327
41
+ EMM87.9 GAS-2025-0339_29_67.1302 98.889 180 180 1 180 50143 50322 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAGTCCCCCAGAGAAGTAACCAACGAATTGGCTGCTTCAGTGTGGAAGAAAAAAGTAGAGGAAGCTAAAGAAAAAGCTAGCAAACTTGAAAAGCAGCTTGAAGAAGCACAAAAGGATTACTCTGAAATAGAAGGAAAGTTAGAACAGTTC 2.54e-89 322
test_input/Spyogenes/emm_typing/test1.mga.blast.tsv ADDED
@@ -0,0 +1,23 @@
1
+ mga_3 GAS-2025-0339_29_67.1302 79.505 1454 1593 1 1448 46757 48204 0.0 1024
2
+ mga_4 GAS-2025-0339_29_67.1302 78.640 1456 1593 1 1448 46757 48204 0.0 952
3
+ mga_5 GAS-2025-0339_29_67.1302 79.436 1454 1593 1 1448 46757 48204 0.0 1018
4
+ mga_8 GAS-2025-0339_29_67.1302 78.571 1456 1593 1 1448 46757 48204 0.0 946
5
+ mga_10 GAS-2025-0339_29_67.1302 79.023 1454 1593 1 1448 46757 48204 0.0 985
6
+ mga_12 GAS-2025-0339_29_67.1302 78.571 1456 1590 1 1448 46757 48204 0.0 946
7
+ mga_15 GAS-2025-0339_29_67.1302 78.777 1456 1593 1 1448 46757 48204 0.0 963
8
+ mga_17 GAS-2025-0339_29_67.1302 78.434 1456 1593 1 1448 46757 48204 0.0 935
9
+ mga_18 GAS-2025-0339_29_67.1302 78.365 1456 1593 1 1448 46757 48204 0.0 929
10
+ mga_19 GAS-2025-0339_29_67.1302 78.709 1456 1593 1 1448 46757 48204 0.0 957
11
+ mga_22 GAS-2025-0339_29_67.1302 78.434 1456 1593 1 1448 46757 48204 0.0 935
12
+ mga_24 GAS-2025-0339_29_67.1302 78.297 1456 1593 1 1448 46757 48204 0.0 924
13
+ mga_27 GAS-2025-0339_29_67.1302 79.038 1455 1593 1 1448 46757 48204 0.0 985
14
+ mga_29 GAS-2025-0339_29_67.1302 79.436 1454 1593 1 1448 46757 48204 0.0 1018
15
+ mga_31 GAS-2025-0339_29_67.1302 79.436 1454 1593 1 1448 46757 48204 0.0 1018
16
+ mga_32 GAS-2025-0339_29_67.1302 79.505 1454 1593 1 1448 46757 48204 0.0 1024
17
+ mga_33 GAS-2025-0339_29_67.1302 78.709 1456 1593 1 1448 46757 48204 0.0 957
18
+ mga_34 GAS-2025-0339_29_67.1302 79.642 1454 1593 1 1448 46757 48204 0.0 1035
19
+ mga_35 GAS-2025-0339_29_67.1302 78.709 1456 1593 1 1448 46757 48204 0.0 957
20
+ mga_38 GAS-2025-0339_29_67.1302 78.777 1456 1593 1 1448 46757 48204 0.0 963
21
+ mga_41 GAS-2025-0339_29_67.1302 78.365 1456 1593 1 1448 46757 48204 0.0 929
22
+ mga_42 GAS-2025-0339_29_67.1302 78.709 1456 1593 1 1448 46757 48204 0.0 957
23
+ mga_45 GAS-2025-0339_29_67.1302 78.571 1456 1593 1 1448 46757 48204 0.0 946
test_input/Spyogenes/emm_typing/test2.emm.blast.tsv ADDED
@@ -0,0 +1,145 @@
1
+ EMM5.132 GAS-2025-0326_6_59.9182 74.566 173 180 1 168 99437 99267 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTAT--GTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAA 3.87e-13 69.4
2
+ EMM5.147 GAS-2025-0326_6_59.9182 74.854 171 180 1 168 99437 99267 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAA 8.33e-15 75.0
3
+ EMM5.176 GAS-2025-0326_6_59.9182 74.860 179 180 1 174 99437 99261 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTAT--GTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTA 8.33e-15 75.0
4
+ EMM5.194 GAS-2025-0326_6_59.9182 74.860 179 180 1 174 99437 99261 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTAT--GTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTA 8.33e-15 75.0
5
+ EMM5.49 GAS-2025-0326_6_59.9182 76.190 168 180 1 163 99437 99272 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATG--TTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGA 4.98e-17 82.4
6
+ EMM5.73 GAS-2025-0326_6_59.9182 76.111 180 180 1 175 99437 99260 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATG--TTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAA 1.07e-18 87.9
7
+ EMM6.0 GAS-2025-0326_6_59.9182 100.000 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.24e-92 333
8
+ EMM6.1 GAS-2025-0326_6_59.9182 98.246 171 180 1 171 99437 99267 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAA 1.26e-82 300
9
+ EMM6.10 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
10
+ EMM6.100 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
11
+ EMM6.101 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
12
+ EMM6.102 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
13
+ EMM6.103 GAS-2025-0326_6_59.9182 97.222 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.71e-84 305
14
+ EMM6.104 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
15
+ EMM6.105 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
16
+ EMM6.106 GAS-2025-0326_6_59.9182 97.059 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.82e-79 287
17
+ EMM6.107 GAS-2025-0326_6_59.9182 98.235 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 4.54e-82 298
18
+ EMM6.108 GAS-2025-0326_6_59.9182 98.824 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.75e-84 303
19
+ EMM6.109 GAS-2025-0326_6_59.9182 98.824 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.75e-84 303
20
+ EMM6.11 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
21
+ EMM6.110 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
22
+ EMM6.111 GAS-2025-0326_6_59.9182 98.824 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.75e-84 303
23
+ EMM6.112 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
24
+ EMM6.113 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
25
+ EMM6.114 GAS-2025-0326_6_59.9182 97.222 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.71e-84 305
26
+ EMM6.115 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
27
+ EMM6.116 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
28
+ EMM6.117 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
29
+ EMM6.118 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
30
+ EMM6.119 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
31
+ EMM6.120 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
32
+ EMM6.121 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
33
+ EMM6.123 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
34
+ EMM6.124 GAS-2025-0326_6_59.9182 98.333 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.25e-87 316
35
+ EMM6.126 GAS-2025-0326_6_59.9182 98.824 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.75e-84 303
36
+ EMM6.127 GAS-2025-0326_6_59.9182 98.824 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.75e-84 303
37
+ EMM6.128 GAS-2025-0326_6_59.9182 97.059 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.82e-79 287
38
+ EMM6.129 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
39
+ EMM6.13 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
40
+ EMM6.130 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
41
+ EMM6.131 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
42
+ EMM6.132 GAS-2025-0326_6_59.9182 95.556 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.73e-79 289
43
+ EMM6.133 GAS-2025-0326_6_59.9182 97.059 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.82e-79 287
44
+ EMM6.134 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
45
+ EMM6.135 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
46
+ EMM6.136 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
47
+ EMM6.137 GAS-2025-0326_6_59.9182 96.111 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.87e-81 294
48
+ EMM6.138 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
49
+ EMM6.139 GAS-2025-0326_6_59.9182 98.333 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.25e-87 316
50
+ EMM6.14 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
51
+ EMM6.140 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
52
+ EMM6.141 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
53
+ EMM6.142 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
54
+ EMM6.143 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
55
+ EMM6.144 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
56
+ EMM6.145 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
57
+ EMM6.146 GAS-2025-0326_6_59.9182 96.667 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.26e-82 300
58
+ EMM6.147 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
59
+ EMM6.148 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
60
+ EMM6.149 GAS-2025-0326_6_59.9182 98.333 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.25e-87 316
61
+ EMM6.15 GAS-2025-0326_6_59.9182 97.661 171 180 1 171 99437 99267 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAA 5.87e-81 294
62
+ EMM6.16 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
63
+ EMM6.17 GAS-2025-0326_6_59.9182 97.778 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.83e-86 311
64
+ EMM6.18 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
65
+ EMM6.19 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
66
+ EMM6.20 GAS-2025-0326_6_59.9182 98.235 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 4.54e-82 298
67
+ EMM6.21 GAS-2025-0326_6_59.9182 98.824 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.75e-84 303
68
+ EMM6.22 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
69
+ EMM6.24 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
70
+ EMM6.25 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
71
+ EMM6.26 GAS-2025-0326_6_59.9182 96.111 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.87e-81 294
72
+ EMM6.28 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
73
+ EMM6.29 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
74
+ EMM6.3 GAS-2025-0326_6_59.9182 97.778 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.83e-86 311
75
+ EMM6.30 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
76
+ EMM6.31 GAS-2025-0326_6_59.9182 98.824 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.75e-84 303
77
+ EMM6.32 GAS-2025-0326_6_59.9182 97.778 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.83e-86 311
78
+ EMM6.33 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
79
+ EMM6.34 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
80
+ EMM6.35 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
81
+ EMM6.36 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
82
+ EMM6.37 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
83
+ EMM6.38 GAS-2025-0326_6_59.9182 97.661 171 180 1 171 99437 99267 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAA 5.87e-81 294
84
+ EMM6.39 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
85
+ EMM6.4 GAS-2025-0326_6_59.9182 100.000 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 4.51e-87 315
86
+ EMM6.40 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
87
+ EMM6.41 GAS-2025-0326_6_59.9182 95.000 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.27e-77 283
88
+ EMM6.42 GAS-2025-0326_6_59.9182 96.471 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 4.57e-77 281
89
+ EMM6.43 GAS-2025-0326_6_59.9182 97.778 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.83e-86 311
90
+ EMM6.44 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
91
+ EMM6.45 GAS-2025-0326_6_59.9182 97.778 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.83e-86 311
92
+ EMM6.46 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
93
+ EMM6.47 GAS-2025-0326_6_59.9182 97.661 171 180 1 171 99437 99267 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAA 5.87e-81 294
94
+ EMM6.48 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
95
+ EMM6.49 GAS-2025-0326_6_59.9182 96.667 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.26e-82 300
96
+ EMM6.5 GAS-2025-0326_6_59.9182 98.333 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.25e-87 316
97
+ EMM6.50 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
98
+ EMM6.51 GAS-2025-0326_6_59.9182 97.647 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.11e-80 292
99
+ EMM6.52 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
100
+ EMM6.53 GAS-2025-0326_6_59.9182 100.000 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 4.51e-87 315
101
+ EMM6.54 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
102
+ EMM6.55 GAS-2025-0326_6_59.9182 98.235 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 4.54e-82 298
103
+ EMM6.56 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
104
+ EMM6.57 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
105
+ EMM6.58 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
106
+ EMM6.59 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
107
+ EMM6.6 GAS-2025-0326_6_59.9182 97.207 179 180 1 179 99437 99259 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAAC 9.75e-84 303
108
+ EMM6.60 GAS-2025-0326_6_59.9182 97.222 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.71e-84 305
109
+ EMM6.61 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
110
+ EMM6.62 GAS-2025-0326_6_59.9182 100.000 168 180 1 168 99437 99270 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAAT 5.83e-86 311
111
+ EMM6.63 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
112
+ EMM6.64 GAS-2025-0326_6_59.9182 97.647 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.11e-80 292
113
+ EMM6.65 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
114
+ EMM6.66 GAS-2025-0326_6_59.9182 95.556 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.73e-79 289
115
+ EMM6.67 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
116
+ EMM6.68 GAS-2025-0326_6_59.9182 97.778 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.83e-86 311
117
+ EMM6.7 GAS-2025-0326_6_59.9182 98.333 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.25e-87 316
118
+ EMM6.70 GAS-2025-0326_6_59.9182 94.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.91e-76 278
119
+ EMM6.72 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
120
+ EMM6.73 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
121
+ EMM6.74 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
122
+ EMM6.75 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
123
+ EMM6.76 GAS-2025-0326_6_59.9182 100.000 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 4.51e-87 315
124
+ EMM6.77 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
125
+ EMM6.78 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
126
+ EMM6.79 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
127
+ EMM6.8 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
128
+ EMM6.80 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
129
+ EMM6.81 GAS-2025-0326_6_59.9182 98.824 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 9.75e-84 303
130
+ EMM6.82 GAS-2025-0326_6_59.9182 97.661 171 180 1 171 99437 99267 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAA 5.87e-81 294
131
+ EMM6.83 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
132
+ EMM6.84 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
133
+ EMM6.85 GAS-2025-0326_6_59.9182 95.000 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 1.27e-77 283
134
+ EMM6.88 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
135
+ EMM6.89 GAS-2025-0326_6_59.9182 99.412 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.10e-85 309
136
+ EMM6.90 GAS-2025-0326_6_59.9182 97.076 171 180 1 171 99437 99267 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAA 2.73e-79 289
137
+ EMM6.91 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
138
+ EMM6.92 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
139
+ EMM6.93 GAS-2025-0326_6_59.9182 99.448 181 180 1 180 99438 99258 ATTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
140
+ EMM6.94 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
141
+ EMM6.95 GAS-2025-0326_6_59.9182 98.889 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 2.69e-89 322
142
+ EMM6.96 GAS-2025-0326_6_59.9182 97.778 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.83e-86 311
143
+ EMM6.97 GAS-2025-0326_6_59.9182 97.647 170 180 1 170 99437 99268 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAA 2.11e-80 292
144
+ EMM6.98 GAS-2025-0326_6_59.9182 99.444 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.79e-91 327
145
+ EMM6.99 GAS-2025-0326_6_59.9182 97.778 180 180 1 180 99437 99258 TTAGTTGTCAATACTAATGAAGTTAGTGCAAGAGTGTTTCCTAGGGGGACGGTAGAAAACCCGGACAAAGCACGAGAACTTCTTAACAAGTATGACGTAGAGAACTCTATGTTACAAGCTAATAATGACAAGTTAACAACTGAGAATAAAAACTTAACAGATCAGAATAAAAACTTAACA 5.83e-86 311
test_input/Spyogenes/emm_typing/test2.mga.blast.tsv ADDED
@@ -0,0 +1,46 @@
1
+ mga_1 GAS-2025-0326_6_59.9182 97.363 1593 1590 1 1590 101309 99717 0.0 2706
2
+ mga_2 GAS-2025-0326_6_59.9182 97.489 1593 1593 1 1593 101309 99717 0.0 2721
3
+ mga_3 GAS-2025-0326_6_59.9182 96.675 1594 1593 1 1593 101309 99717 0.0 2649
4
+ mga_4 GAS-2025-0326_6_59.9182 98.117 1593 1593 1 1593 101309 99717 0.0 2776
5
+ mga_5 GAS-2025-0326_6_59.9182 96.989 1594 1593 1 1593 101309 99717 0.0 2676
6
+ mga_6 GAS-2025-0326_6_59.9182 97.112 1593 1590 1 1590 101309 99717 0.0 2684
7
+ mga_7 GAS-2025-0326_6_59.9182 97.552 1593 1593 1 1593 101309 99717 0.0 2726
8
+ mga_8 GAS-2025-0326_6_59.9182 97.362 1592 1593 1 1592 101309 99718 0.0 2708
9
+ mga_9 GAS-2025-0326_6_59.9182 97.615 1593 1593 1 1593 101309 99717 0.0 2732
10
+ mga_10 GAS-2025-0326_6_59.9182 97.240 1594 1593 1 1593 101309 99717 0.0 2699
11
+ mga_11 GAS-2025-0326_6_59.9182 97.677 1593 1593 1 1593 101309 99717 0.0 2737
12
+ mga_12 GAS-2025-0326_6_59.9182 97.426 1593 1590 1 1590 101309 99717 0.0 2712
13
+ mga_13 GAS-2025-0326_6_59.9182 97.301 1593 1593 1 1593 101309 99717 0.0 2704
14
+ mga_14 GAS-2025-0326_6_59.9182 97.489 1593 1593 1 1593 101309 99717 0.0 2721
15
+ mga_15 GAS-2025-0326_6_59.9182 98.305 1593 1593 1 1593 101309 99717 0.0 2793
16
+ mga_16 GAS-2025-0326_6_59.9182 97.552 1593 1593 1 1593 101309 99717 0.0 2726
17
+ mga_17 GAS-2025-0326_6_59.9182 97.301 1593 1593 1 1593 101309 99717 0.0 2704
18
+ mga_18 GAS-2025-0326_6_59.9182 97.238 1593 1593 1 1593 101309 99717 0.0 2699
19
+ mga_19 GAS-2025-0326_6_59.9182 98.242 1593 1593 1 1593 101309 99717 0.0 2787
20
+ mga_20 GAS-2025-0326_6_59.9182 100.000 1593 1593 1 1593 101309 99717 0.0 2942
21
+ mga_21 GAS-2025-0326_6_59.9182 96.462 1611 1611 1 1611 101309 99717 0.0 2643
22
+ mga_22 GAS-2025-0326_6_59.9182 97.238 1593 1593 1 1593 101309 99717 0.0 2699
23
+ mga_23 GAS-2025-0326_6_59.9182 97.238 1593 1593 1 1593 101309 99717 0.0 2699
24
+ mga_24 GAS-2025-0326_6_59.9182 97.175 1593 1593 1 1593 101309 99717 0.0 2693
25
+ mga_25 GAS-2025-0326_6_59.9182 97.363 1593 1593 1 1593 101309 99717 0.0 2710
26
+ mga_26 GAS-2025-0326_6_59.9182 97.489 1593 1593 1 1593 101309 99717 0.0 2721
27
+ mga_27 GAS-2025-0326_6_59.9182 96.673 1593 1593 1 1593 101309 99717 0.0 2649
28
+ mga_28 GAS-2025-0326_6_59.9182 97.803 1593 1593 1 1593 101309 99717 0.0 2748
29
+ mga_29 GAS-2025-0326_6_59.9182 96.926 1594 1593 1 1593 101309 99717 0.0 2671
30
+ mga_30 GAS-2025-0326_6_59.9182 97.175 1593 1593 1 1593 101309 99717 0.0 2693
31
+ mga_31 GAS-2025-0326_6_59.9182 96.989 1594 1593 1 1593 101309 99717 0.0 2676
32
+ mga_32 GAS-2025-0326_6_59.9182 96.989 1594 1593 1 1593 101309 99717 0.0 2676
33
+ mga_33 GAS-2025-0326_6_59.9182 98.180 1593 1593 1 1593 101309 99717 0.0 2782
34
+ mga_34 GAS-2025-0326_6_59.9182 96.801 1594 1593 1 1593 101309 99717 0.0 2660
35
+ mga_35 GAS-2025-0326_6_59.9182 97.928 1593 1593 1 1593 101309 99717 0.0 2760
36
+ mga_36 GAS-2025-0326_6_59.9182 97.363 1593 1593 1 1593 101309 99717 0.0 2710
37
+ mga_37 GAS-2025-0326_6_59.9182 97.867 1594 1593 1 1593 101309 99717 0.0 2754
38
+ mga_38 GAS-2025-0326_6_59.9182 98.242 1593 1593 1 1593 101309 99717 0.0 2787
39
+ mga_39 GAS-2025-0326_6_59.9182 97.426 1593 1593 1 1593 101309 99717 0.0 2715
40
+ mga_40 GAS-2025-0326_6_59.9182 97.489 1593 1593 1 1593 101309 99717 0.0 2721
41
+ mga_41 GAS-2025-0326_6_59.9182 97.238 1593 1593 1 1593 101309 99717 0.0 2699
42
+ mga_42 GAS-2025-0326_6_59.9182 98.242 1593 1593 1 1593 101309 99717 0.0 2787
43
+ mga_43 GAS-2025-0326_6_59.9182 96.400 1611 1611 1 1611 101309 99717 0.0 2638
44
+ mga_44 GAS-2025-0326_6_59.9182 97.426 1593 1593 1 1593 101309 99717 0.0 2715
45
+ mga_45 GAS-2025-0326_6_59.9182 97.487 1592 1593 1 1592 101309 99718 0.0 2719
46
+ mga_46 GAS-2025-0326_6_59.9182 97.301 1593 1590 1 1590 101309 99717 0.0 2700
test_input/Spyogenes/emm_typing/test3.emm.blast.tsv ADDED
@@ -0,0 +1,22 @@
1
+ EMM102.8 GAS-2025-0001_1_55.4597 83.051 177 180 1 177 148596 148763 GGCTTTGCAAACCAAACAGAAGTTAAGGCG--GAA-GGGGTTTCTGTAGGT-TC-----AGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAA 3.72e-38 152
2
+ EMM141.3 GAS-2025-0001_1_55.4597 97.222 180 180 1 180 147122 147301 GGATTAGCAAATACAACTGATGTAAAGGCTGACTTAAGTACTCAGGAAAATCCTAGAGTAACAAAAGCGAGAGAAGAAGCTCTCGAGGAAGTTTTACGTAGTTGGGATTATGGATCTGTAAGAGCTGCCTTGGCAGGATCTTATCGTAAAAACTTACAACTTGAAAACACTATTAAGCAG 2.70e-84 305
3
+ EMM149.0 GAS-2025-0001_1_55.4597 84.865 185 180 1 180 149879 150061 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATCAAGCAGCTTCTGGAACTTCTGTAAATAATGGAGCTTCTAAAAGCGTAGAATCATTTA-AATATGAT-GCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAGAAAATTAACGCAGAAGAAGAAAAAAATAAA 1.71e-46 180
4
+ EMM149.3 GAS-2025-0001_1_55.4597 83.696 184 180 1 180 149879 150061 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATCAAGCAGCTTCTGGAACTTCTGTAAATAATGGAGCTTCTAAAAGCGTAGAATCATTTAAATATGAT-GCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAGAAAATTAACGCAGAAGAAGAAAAAAATAAA 3.69e-43 169
5
+ EMM149.5 GAS-2025-0001_1_55.4597 85.405 185 180 1 180 149879 150061 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATCAAGCAGCTTCTGGAACTTCTGTAAATAATGGAGCTTCTAAAAGCGTAGAATCATTTA-AATATGAT-GCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAGAAAATTAACGCAGAAGAAGAAAAAAATAAA 3.67e-48 185
6
+ EMM159.0 GAS-2025-0001_1_55.4597 100.000 180 180 1 180 149879 150058 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATCAAGCAGCTTCTGGAACTTCTGTAAATAATGGAGCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAGAAAATTAACGCAGAAGAAGAAAAAAAT 1.24e-92 333
7
+ EMM159.1 GAS-2025-0001_1_55.4597 97.222 180 180 1 180 149879 150058 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATCAAGCAGCTTCTGGAACTTCTGTAAATAATGGAGCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAGAAAATTAACGCAGAAGAAGAAAAAAAT 2.70e-84 305
8
+ EMM159.2 GAS-2025-0001_1_55.4597 99.444 180 180 1 180 149879 150058 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATCAAGCAGCTTCTGGAACTTCTGTAAATAATGGAGCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAGAAAATTAACGCAGAAGAAGAAAAAAAT 5.76e-91 327
9
+ EMM159.3 GAS-2025-0001_1_55.4597 97.222 180 180 1 180 149879 150058 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATCAAGCAGCTTCTGGAACTTCTGTAAATAATGGAGCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAGAAAATTAACGCAGAAGAAGAAAAAAAT 2.70e-84 305
10
+ EMM159.4 GAS-2025-0001_1_55.4597 97.222 180 180 1 180 149879 150058 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGATCAAGCAGCTTCTGGAACTTCTGTAAATAATGGAGCTTCTAAAAGCGTAGAATCATTTAAATATGATGCTTTAAGAGGTGAAAATGCTGACCTTAGAAATGTAAATGCAAAATATTTAGAGAAAATTAACGCAGAAGAAGAAAAAAAT 2.70e-84 305
11
+ EMM77.0 GAS-2025-0001_1_55.4597 100.000 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 1.24e-92 333
12
+ EMM77.1 GAS-2025-0001_1_55.4597 99.444 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 5.76e-91 327
13
+ EMM77.10 GAS-2025-0001_1_55.4597 99.444 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 5.76e-91 327
14
+ EMM77.11 GAS-2025-0001_1_55.4597 96.111 180 180 1 180 148596 148769 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGAC------CTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAA 2.72e-79 289
15
+ EMM77.12 GAS-2025-0001_1_55.4597 98.889 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 2.68e-89 322
16
+ EMM77.2 GAS-2025-0001_1_55.4597 99.444 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 5.76e-91 327
17
+ EMM77.3 GAS-2025-0001_1_55.4597 99.444 180 180 1 180 148593 148772 GCAGGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGAT 5.76e-91 327
18
+ EMM77.4 GAS-2025-0001_1_55.4597 99.444 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 5.76e-91 327
19
+ EMM77.5 GAS-2025-0001_1_55.4597 99.444 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 5.76e-91 327
20
+ EMM77.7 GAS-2025-0001_1_55.4597 98.889 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 2.68e-89 322
21
+ EMM77.8 GAS-2025-0001_1_55.4597 99.444 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 5.76e-91 327
22
+ EMM77.9 GAS-2025-0001_1_55.4597 98.333 180 180 1 180 148596 148775 GGCTTTGCAAACCAAACAGAAGTTAAGGCGGAAGGGGTTTCTGTAGGTTCAGATGCATCACTACATAACCGCATTACAGACCTTGAAGAGGAAAGAGAAAAATTATTAAATAAATTAGATAAAGTTGAAGAAGAGCATAAAAAAGATCATGAACAACTTGAAAAAAAATCAGAAGATGTA 1.25e-87 316
test_input/Spyogenes/emm_typing/test4.emm.blast.tsv ADDED
@@ -0,0 +1,19 @@
1
+ EMM106.0 GAS-2025-0003_28_51.1245 79.570 186 180 1 180 42535 42356 GGCTTTGCAAACCAAACAACAGTTAAGG---CTGCGGACCCCCAGAAACAGAACAGCGTTTCTAATGATAGCGTGAGCATAAATG---TATATAATAAGCTATCGGGTGACTATGATAAGCTATTGGATAAACATGGTGAGCTATTGAGTGAATATGATGCTCTTAAAGAAAAACTAGATAAAGAT 2.62e-29 122
2
+ EMM106.5 GAS-2025-0003_28_51.1245 79.032 186 180 1 180 42535 42356 GGCTTTGCAAACCAAACAACAGTTAAGG---CTGCGGACCCCCAGAAACAGAACAGCGTTTCTAATGATAGCGTGAGCATAAATG---TATATAATAAGCTATCGGGTGACTATGATAAGCTATTGGATAAACATGGTGAGCTATTGAGTGAATATGATGCTCTTAAAGAAAAACTAGATAAAGAT 1.22e-27 117
3
+ EMM106.6 GAS-2025-0003_28_51.1245 80.645 186 180 1 180 42535 42356 GGCTTTGCAAACCAAACAACAGTTAAGGCT---GCGGACCCCCAGAAACAGAACAGCGTTTCTAATGATAGCGTGAGCATAAATG---TATATAATAAGCTATCGGGTGACTATGATAAGCTATTGGATAAACATGGTGAGCTATTGAGTGAATATGATGCTCTTAAAGAAAAACTAGATAAAGAT 1.21e-32 134
4
+ EMM106.7 GAS-2025-0003_28_51.1245 80.108 186 180 1 180 42560 42381 GGTCGCTGTGGCTGTTTTAGGAGCAGGCTTTGCAAACCAAACAACAGTTAAGGCTG---CGGACCCCCAGAAACAGAACAGCGTTTCTAATGATAGCGTGAGCATAAATGTA-TATA--ATAAGCTATCGGGTGACTATGATAAGCTATTGGATAAACATGGTGAGCTATTGAGTGAATATGATGC 5.64e-31 128
5
+ EMM117.1 GAS-2025-0003_28_51.1245 82.540 189 180 1 180 42535 42350 GGCTTTGCAAACCAAACAACAGTTAAGGCTGCGGACCCCCAGAAACAGAACAGCGTTTCTAA---TGATAGCGTGAGCATAAATGTATATAATAAGCTATCGGGTGACTATGATAAGCTATTGGATAAACATGGTGAGCTATTGAGTGAATATGATGCTCTTAAAGAAAAACTAGATAAAGATCAAGAA 2.59e-39 156
6
+ EMM13.0 GAS-2025-0003_28_51.1245 100.000 180 180 1 180 42535 42356 GGCTTTGCAAACCAAACAACAGTTAAGGCTGCGGACCCCCAGAAACAGAACAGCGTTTCTAATGATAGCGTGAGCATAAATGTATATAATAAGCTATCGGGTGACTATGATAAGCTATTGGATAAACATGGTGAGCTATTGAGTGAATATGATGCTCTTAAAGAAAAACTAGATAAAGAT 1.11e-92 333
7
+ EMM13.1 GAS-2025-0003_28_51.1245 99.444 180 180 1 180 42535 42356 GGCTTTGCAAACCAAACAACAGTTAAGGCTGCGGACCCCCAGAAACAGAACAGCGTTTCTAATGATAGCGTGAGCATAAATGTATATAATAAGCTATCGGGTGACTATGATAAGCTATTGGATAAACATGGTGAGCTATTGAGTGAATATGATGCTCTTAAAGAAAAACTAGATAAAGAT 5.18e-91 327
8
+ EMM141.0 GAS-2025-0003_28_51.1245 98.889 180 180 1 180 44008 43829 GGATTAGCAAACACAACTGATGTAAAGGCAGACTTCAGTACTCAGGAAAATCCTAGAGTAACAGAAGCAAGAGAAAAAGCTTTAAAAGAAGTTATAACAAAGATGCCTTTAGATGAACTCCAGCAAACTCTAGCAGGATCTTACCGCAAGAACAGAGAGCTGGAAAAGACAATCGAGAAA 2.41e-89 322
9
+ EMM141.1 GAS-2025-0003_28_51.1245 97.222 180 180 1 180 44008 43829 GGATTAGCAAACACAACTGATGTAAAGGCAGACTTCAGTACTCAGGAAAATCCTAGAGTAACAGAAGCAAGAGAAAAAGCTTTAAAAGAAGTTATAACAAAGATGCCTTTAGATGAACTCCAGCAAACTCTAGCAGGATCTTACCGCAAGAACAGAGAGCTGGAAAAGACAATCGAGAAA 2.43e-84 305
10
+ EMM141.2 GAS-2025-0003_28_51.1245 95.000 180 180 1 180 44008 43829 GGATTAGCAAACACAACTGATGTAAAGGCAGACTTCAGTACTCAGGAAAATCCTAGAGTAACAGAAGCAAGAGAAAAAGCTTTAAAAGAAGTTATAACAAAGATGCCTTTAGATGAACTCCAGCAAACTCTAGCAGGATCTTACCGCAAGAACAGAGAGCTGGAAAAGACAATCGAGAAA 1.14e-77 283
11
+ EMM141.4 GAS-2025-0003_28_51.1245 100.000 180 180 1 180 44008 43829 GGATTAGCAAACACAACTGATGTAAAGGCAGACTTCAGTACTCAGGAAAATCCTAGAGTAACAGAAGCAAGAGAAAAAGCTTTAAAAGAAGTTATAACAAAGATGCCTTTAGATGAACTCCAGCAAACTCTAGCAGGATCTTACCGCAAGAACAGAGAGCTGGAAAAGACAATCGAGAAA 1.11e-92 333
12
+ EMM203.3 GAS-2025-0003_28_51.1245 97.175 177 180 4 180 41258 41082 TTTGCAAACCAAACAGAAGTAAGAGCTGAAGGGGTAAACCCAACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCATTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.13e-82 300
13
+ EMM203.4 GAS-2025-0003_28_51.1245 97.222 180 180 1 180 41261 41082 GGTTTTGCAAACCAAACAGAAGTAAGAGCTGAAGGGGTAAACCCAACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCATTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 2.43e-84 305
14
+ EMM203.5 GAS-2025-0003_28_51.1245 94.350 177 180 4 180 41258 41082 TTTGCAAACCAAACAGAAGTAAGAGCTGAAGGGGTAAACCCAACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCATTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 2.46e-74 272
15
+ EMM236.0 GAS-2025-0003_28_51.1245 94.350 177 180 4 180 41258 41082 TTTGCAAACCAAACAGAAGTAAGAGCTGAAGGGGTAAACCCAACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCATTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 2.46e-74 272
16
+ EMM236.2 GAS-2025-0003_28_51.1245 94.444 180 180 1 180 41261 41082 GGTTTTGCAAACCAAACAGAAGTAAGAGCTGAAGGGGTAAACCCAACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCATTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 5.29e-76 278
17
+ EMM236.3 GAS-2025-0003_28_51.1245 94.444 180 180 1 180 41261 41082 GGTTTTGCAAACCAAACAGAAGTAAGAGCTGAAGGGGTAAACCCAACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCATTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 5.29e-76 278
18
+ EMM76.21 GAS-2025-0003_28_51.1245 82.514 183 180 1 180 42535 42353 GGCTTTGCAAACCAAACAACAGTTAAGGCTGCGGACCCCCAGAAACAGAACAGCGTTTCTAATGATAGCGTGAGCATAAATGTATATAATAAGCTATCGGGTGACTATGATAAGCTATTGGATAAACATGGTGAGCTATTGAGTGAATATGATGCTCTTAAAGAAAAACTAGATAAAGATCAA 7.20e-40 158
19
+ EMM76.24 GAS-2025-0003_28_51.1245 83.607 183 180 1 180 42535 42353 GGCTTTGCAAACCAAACAACAGTTAAGGCTGCGGACCCCCAGAAACAGAACAGCGTTTCTAATGATAGCGTGAGCATAAATGTATATAATAAGCTATCGGGTGACTATGATAAGCTATTGGATAAACATGGTGAGCTATTGAGTGAATATGATGCTCTTAAAGAAAAACTAGATAAAGATCAA 3.32e-43 169
test_input/Spyogenes/emm_typing/test5.emm.blast.tsv ADDED
@@ -0,0 +1,32 @@
1
+ EMM156.0 GAS-2025-0224_35_75.6759 94.444 180 180 1 180 86074 86253 GGCTTAGCAAACACAACTGATGTAAAGGCTGAGAGTCGTGGTTACCAGGTGCCTCCTCGTGTGTTACTGCCAGGTAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCACGTGAACTGGGTGATACTATTAACCACATGTCACAAACCATTAGCGAGCAAAGC 5.60e-76 278
2
+ EMM156.1 GAS-2025-0224_35_75.6759 98.333 180 180 1 180 86074 86253 GGCTTAGCAAACACAACTGATGTAAAGGCTGAGAGTCGTGGTTACCAGGTGCCTCCTCGTGTGTTACTGCCAGGTAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCACGTGAACTGGGTGATACTATTAACCACATGTCACAAACCATTAGCGAGCAAAGC 1.19e-87 316
3
+ EMM156.2 GAS-2025-0224_35_75.6759 97.222 180 180 1 180 86074 86253 GGCTTAGCAAACACAACTGATGTAAAGGCTGAGAGTCGTGGTTACCAGGTGCCTCCTCGTGTGTTACTGCCAGGTAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCACGTGAACTGGGTGATACTATTAACCACATGTCACAAACCATTAGCGAGCAAAGC 2.57e-84 305
4
+ EMM156.3 GAS-2025-0224_35_75.6759 97.222 180 180 1 180 86074 86253 GGCTTAGCAAACACAACTGATGTAAAGGCTGAGAGTCGTGGTTACCAGGTGCCTCCTCGTGTGTTACTGCCAGGTAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCACGTGAACTGGGTGATACTATTAACCACATGTCACAAACCATTAGCGAGCAAAGC 2.57e-84 305
5
+ EMM156.4 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 86074 86253 GGCTTAGCAAACACAACTGATGTAAAGGCTGAGAGTCGTGGTTACCAGGTGCCTCCTCGTGTGTTACTGCCAGGTAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCACGTGAACTGGGTGATACTATTAACCACATGTCACAAACCATTAGCGAGCAAAGC 5.48e-91 327
6
+ EMM81.0 GAS-2025-0224_35_75.6759 100.000 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 1.18e-92 333
7
+ EMM81.1 GAS-2025-0224_35_75.6759 92.778 180 180 1 180 87465 87635 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCA---------GCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAAT 3.39e-68 252
8
+ EMM81.10 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
9
+ EMM81.11 GAS-2025-0224_35_75.6759 86.667 180 180 1 180 87465 87623 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGT-----------T-CAGAAGAGAATGTACCGAAGCA---------GCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTA 1.62e-46 180
10
+ EMM81.12 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
11
+ EMM81.13 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
12
+ EMM81.14 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
13
+ EMM81.15 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
14
+ EMM81.16 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
15
+ EMM81.17 GAS-2025-0224_35_75.6759 95.628 183 180 1 180 87465 87647 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTAGAA 7.19e-80 291
16
+ EMM81.18 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
17
+ EMM81.19 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
18
+ EMM81.2 GAS-2025-0224_35_75.6759 99.438 178 180 3 180 87467 87644 CTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 7.09e-90 324
19
+ EMM81.20 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
20
+ EMM81.21 GAS-2025-0224_35_75.6759 98.333 180 180 1 180 87465 87641 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGAT---CTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAG 1.53e-86 313
21
+ EMM81.22 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
22
+ EMM81.23 GAS-2025-0224_35_75.6759 88.333 180 180 1 180 87465 87626 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCA---------GCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATAC---------ATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAAC 1.25e-52 200
23
+ EMM81.24 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
24
+ EMM81.25 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
25
+ EMM81.26 GAS-2025-0224_35_75.6759 98.889 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 2.55e-89 322
26
+ EMM81.3 GAS-2025-0224_35_75.6759 92.778 180 180 1 180 87465 87635 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCA---------GCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAAT 3.39e-68 252
27
+ EMM81.4 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
28
+ EMM81.5 GAS-2025-0224_35_75.6759 96.175 183 180 1 180 87466 87648 GCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTAGAAG 1.55e-81 296
29
+ EMM81.6 GAS-2025-0224_35_75.6759 86.667 180 180 1 180 87465 87623 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTAC-----C-G---AA---GC------A---GCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTA 1.62e-46 180
30
+ EMM81.7 GAS-2025-0224_35_75.6759 98.889 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 2.55e-89 322
31
+ EMM81.8 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
32
+ EMM81.9 GAS-2025-0224_35_75.6759 99.444 180 180 1 180 87465 87644 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGGTTCAGAAGAGAATGTACCGAAGCAGCAGTATAATGCGCTATGGGAGGAAAATGAGGATCTCCGAGGGAGAGAACGGAAATACATAGCCAAACTTGAAAAAGAAGAGATACAAAATGGAGAACTAAACGAGAAAAATAGAAAGTTA 5.48e-91 327
test_input/Spyogenes/emm_typing/test6.emm.blast.tsv ADDED
@@ -0,0 +1,45 @@
1
+ EMM156.0 GAS-2025-0367_2_61.3538 85.556 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCATG---TTGATGTTGTGCTT-T-C-AGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 5.79e-46 178
2
+ EMM156.1 GAS-2025-0367_2_61.3538 85.000 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 2.69e-44 172
3
+ EMM156.2 GAS-2025-0367_2_61.3538 86.111 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 1.24e-47 183
4
+ EMM156.3 GAS-2025-0367_2_61.3538 85.556 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 5.79e-46 178
5
+ EMM156.4 GAS-2025-0367_2_61.3538 85.000 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 2.69e-44 172
6
+ EMM203.3 GAS-2025-0367_2_61.3538 96.111 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 5.51e-81 294
7
+ EMM203.4 GAS-2025-0367_2_61.3538 96.667 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.18e-82 300
8
+ EMM203.5 GAS-2025-0367_2_61.3538 93.333 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.20e-72 267
9
+ EMM236.0 GAS-2025-0367_2_61.3538 93.333 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.20e-72 267
10
+ EMM236.1 GAS-2025-0367_2_61.3538 93.889 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 2.58e-74 272
11
+ EMM236.3 GAS-2025-0367_2_61.3538 93.889 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 2.58e-74 272
12
+ EMM28.0 GAS-2025-0367_2_61.3538 100.000 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 1.17e-92 333
13
+ EMM28.1 GAS-2025-0367_2_61.3538 98.788 165 180 1 165 202215 202379 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAA 5.51e-81 294
14
+ EMM28.10 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
15
+ EMM28.11 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
16
+ EMM28.12 GAS-2025-0367_2_61.3538 98.333 180 180 1 180 202215 202391 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTA---AAGAAGAAGAACCTAGGTATAAA 1.52e-86 313
17
+ EMM28.13 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
18
+ EMM28.14 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
19
+ EMM28.15 GAS-2025-0367_2_61.3538 98.333 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 1.18e-87 316
20
+ EMM28.16 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
21
+ EMM28.17 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
22
+ EMM28.18 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
23
+ EMM28.19 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
24
+ EMM28.2 GAS-2025-0367_2_61.3538 99.390 164 180 1 164 202215 202378 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGA 4.26e-82 298
25
+ EMM28.20 GAS-2025-0367_2_61.3538 98.889 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 2.53e-89 322
26
+ EMM28.21 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
27
+ EMM28.22 GAS-2025-0367_2_61.3538 98.765 162 180 1 162 202215 202376 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAA 2.56e-79 289
28
+ EMM28.23 GAS-2025-0367_2_61.3538 98.889 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 2.53e-89 322
29
+ EMM28.24 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
30
+ EMM28.25 GAS-2025-0367_2_61.3538 100.000 175 180 1 175 202215 202389 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATA 7.02e-90 324
31
+ EMM28.26 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
32
+ EMM28.27 GAS-2025-0367_2_61.3538 98.889 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 2.53e-89 322
33
+ EMM28.28 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
34
+ EMM28.29 GAS-2025-0367_2_61.3538 98.361 183 180 1 180 202215 202397 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCATTG 3.27e-88 318
35
+ EMM28.3 GAS-2025-0367_2_61.3538 99.394 165 180 1 165 202215 202379 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAA 1.18e-82 300
36
+ EMM28.30 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
37
+ EMM28.31 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
38
+ EMM28.32 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
39
+ EMM28.33 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
40
+ EMM28.4 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
41
+ EMM28.5 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
42
+ EMM28.6 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
43
+ EMM28.7 GAS-2025-0367_2_61.3538 99.383 162 180 1 162 202215 202376 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAA 5.51e-81 294
44
+ EMM28.8 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
45
+ EMM28.9 GAS-2025-0367_2_61.3538 98.333 180 180 1 180 202215 202391 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCT---AAAGAAGAAGAACCTAGGTATAAA 1.52e-86 313
ssi_analysis_result_parsers-0.0.6.dist-info/RECORD DELETED
@@ -1,28 +0,0 @@
1
- ssi_analysis_result_parsers/Legionella_parser.py,sha256=an9Rm9r4N3wQXy0qhUpvacy4Wb6HxUXFdDA7D6YsQyY,7237
2
- ssi_analysis_result_parsers/__init__.py,sha256=S7u1lbuWmM3A3ajykBialmPoJUK6Jg-WmNqM-9OZFdk,22
3
- ssi_analysis_result_parsers/_modidx.py,sha256=ysvICOsqtGaXuCYPu-UuRGVRhZDJ-O9X3o9lE7rzzGI,11089
4
- ssi_analysis_result_parsers/blast_parser.py,sha256=EBqWlx8bDlaSzqAZomiUGnT2DGaaA-L7ukny7SEJbpk,7915
5
- ssi_analysis_result_parsers/core.py,sha256=8CzFMDrGJ24D9aoIebLsG8tx-OxvYJod1cxBITqNfaY,12258
6
- ssi_analysis_result_parsers/hello_world.py,sha256=jpN94sqYuNHqUbUZMCJ35qGY5iLPB_emucgnDGDUk_U,1895
7
- ssi_analysis_result_parsers/some_string.py,sha256=JwmAXKbX_JgY8UGh4FAu5-7ZjezcAEhq4Q2B73pWp2M,923
8
- ssi_analysis_result_parsers/config/config.default.env,sha256=Zt6bfPbVV3rYCksoebX1ruAdFgeD9wqAnKDtswhtJJM,1390
9
- ssi_analysis_result_parsers/config/config.default.yaml,sha256=3qgUrUtQpxrzYv7WQaHsvz9dQB0RALKNU0idxv7oRqM,460
10
- ssi_analysis_result_parsers-0.0.6.dist-info/licenses/LICENSE,sha256=p6aTb6QIfqyZ2Uux2VjV4F2zthdUSHZOjB4mfwGc7fo,1094
11
- test_input/.DS_Store,sha256=sdTEvl9DTKPHNPYYjMqDepX7q7ZETlonk21tGEuWLao,6148
12
- test_input/empty_file.txt,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
13
- test_input/Legionella/batch_parser_file_paths.tsv,sha256=AikBS_Ez1xO3UrEQ19AY3z6drBDdMAiSGK66NLeyYj4,356
14
- test_input/Legionella/lag-1_blast.tsv,sha256=MN5QL_iBn9gQ8VTYEcTnT0JwKgpkD8G15-QFOrSWxkU,1133
15
- test_input/Legionella/lag-1_blast_2.tsv,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
16
- test_input/Legionella/test.sbt.tsv,sha256=ibhaH3is2dxHaABPvR2QM2HAq9bKOs1AwOTmrwSrcd8,168
17
- test_input/Legionella/test2.sbt.tsv,sha256=uJyVGHKXPmnvaXSt_84_buATOyl79H6vZjkWRitca9k,170
18
- test_input/blast_parser/allele_matches_test.tsv,sha256=7vfQAOxz3fKc84HtxN9eoCyQoF9G8MFd-GKH3Krw_Cs,233035
19
- test_input/blast_parser/empty_gene_presence_absense_test.tsv,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
20
- test_input/blast_parser/gene_presence_absence_test.tsv,sha256=qCvMkBC-1GuXx83RDhnGAuuBXAlIq4e_IW0rrNVn2yA,1447
21
- test_output/output_with_sample_name.tsv,sha256=NQG7WaxczuWCCsX2a9MUxCCYpbuAirz9gw08OLdEdUo,41
22
- test_output/test.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
23
- test_output/test_batch_output.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
24
- ssi_analysis_result_parsers-0.0.6.dist-info/METADATA,sha256=WUMU9Lfanw3DLtDNZUzKIZaBU071v00068cENqOkpq8,2765
25
- ssi_analysis_result_parsers-0.0.6.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
26
- ssi_analysis_result_parsers-0.0.6.dist-info/entry_points.txt,sha256=eG2NzlNDoG__0PPHl3eoKK5EXIz02BGhRX-L2aWgKCY,447
27
- ssi_analysis_result_parsers-0.0.6.dist-info/top_level.txt,sha256=3q56bBc2Wv2a6ZQ1l_9m66vot2-Qu6tM9tDr3QQ8auM,81
28
- ssi_analysis_result_parsers-0.0.6.dist-info/RECORD,,