ssi-analysis-result-parsers 0.0.2__py3-none-any.whl → 0.0.4__py3-none-any.whl

ssi_analysis_result_parsers/Legionella_parser.py

@@ -65,6 +65,8 @@ def legionella_summary(legionella_sbt_results_tsv: Path, lag1_blast_tsv: Path) -
     results_dict = core.update_results_dict(
         sbt_results_dict, lag1_blast_dict, old_duplicate_key_prefix="SBT: "
     )
+    if results_dict is None:
+        return {}
     return results_dict
 
 
@@ -145,7 +147,6 @@ class LegionellaResults(core.PipelineResults):
             include_match_stats=False,
             gene_names=["lag-1"],
         )
-        print(lag1_blast_dict)
         results_dict = core.update_results_dict(
             sbt_results_dict, lag1_blast_dict, old_duplicate_key_prefix="SBT: "
         )

ssi_analysis_result_parsers/__init__.py

@@ -1 +1 @@
-__version__ = "0.0.2"
+__version__ = "0.0.3"

ssi_analysis_result_parsers/core.py

@@ -196,6 +196,7 @@ def get_samplesheet(sample_sheet_config: dict) -> pd.DataFrame:
 class PipelineResults:
 
     def __init__(self, results_dict):
+        print(results_dict)
         self.results_dict = results_dict
         self.results_df = pandas.DataFrame.from_dict(results_dict, orient="index")
 

{ssi_analysis_result_parsers-0.0.2.dist-info → ssi_analysis_result_parsers-0.0.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ssi_analysis_result_parsers
-Version: 0.0.2
+Version: 0.0.4
 Summary: TODO
 Home-page: https://github.com/thej-ssi/ssi_analysis_result_parsers
 Author: Thor Bech Johannesen

{ssi_analysis_result_parsers-0.0.2.dist-info → ssi_analysis_result_parsers-0.0.4.dist-info}/RECORD

@@ -1,13 +1,13 @@
-ssi_analysis_result_parsers/Legionella_parser.py,sha256=zBsSYfuUj2uN_LRqgTpOwhFUQF2jTLNvVzKbh6OPNxE,8878
-ssi_analysis_result_parsers/__init__.py,sha256=QvlVh4JTl3JL7jQAja76yKtT-IvF4631ASjWY1wS6AQ,22
+ssi_analysis_result_parsers/Legionella_parser.py,sha256=CP5r1RriVd4zxeTBokLJYcu5iS6xbK3pBzI6xwITSm0,8894
+ssi_analysis_result_parsers/__init__.py,sha256=4GZKi13lDTD25YBkGakhZyEQZWTER_OWQMNPoH_UM2c,22
 ssi_analysis_result_parsers/_modidx.py,sha256=JY_GM0tMojzTtX9O4D8as4k5a-sXqkxkb7ZUEPzhuMk,12232
 ssi_analysis_result_parsers/blast_parser.py,sha256=L7EdW2LUwSS2OQO7WZUAxP6whJXdvTILE2a3O59uv-s,7441
-ssi_analysis_result_parsers/core.py,sha256=HWnP0tjePcrmKu2yawcWrhWplTwWaY_9W5kSqB4h6mg,12096
+ssi_analysis_result_parsers/core.py,sha256=6TGURv8spPdBpwKv6LvqvbVzJChdeHwsG3WQ6QLUuvE,12124
 ssi_analysis_result_parsers/hello_world.py,sha256=jpN94sqYuNHqUbUZMCJ35qGY5iLPB_emucgnDGDUk_U,1895
 ssi_analysis_result_parsers/some_string.py,sha256=JwmAXKbX_JgY8UGh4FAu5-7ZjezcAEhq4Q2B73pWp2M,923
 ssi_analysis_result_parsers/config/config.default.env,sha256=Zt6bfPbVV3rYCksoebX1ruAdFgeD9wqAnKDtswhtJJM,1390
 ssi_analysis_result_parsers/config/config.default.yaml,sha256=3qgUrUtQpxrzYv7WQaHsvz9dQB0RALKNU0idxv7oRqM,460
-ssi_analysis_result_parsers-0.0.2.dist-info/licenses/LICENSE,sha256=p6aTb6QIfqyZ2Uux2VjV4F2zthdUSHZOjB4mfwGc7fo,1094
+ssi_analysis_result_parsers-0.0.4.dist-info/licenses/LICENSE,sha256=p6aTb6QIfqyZ2Uux2VjV4F2zthdUSHZOjB4mfwGc7fo,1094
 test_input/.DS_Store,sha256=sdTEvl9DTKPHNPYYjMqDepX7q7ZETlonk21tGEuWLao,6148
 test_input/Legionella/batch_parser_file_paths.tsv,sha256=zls11lmEA5U89d8RsX6PR8M1zXNVimeL4raqdZ3ijvQ,210
 test_input/Legionella/lag-1_blast.tsv,sha256=MN5QL_iBn9gQ8VTYEcTnT0JwKgpkD8G15-QFOrSWxkU,1133
@@ -20,8 +20,8 @@ test_input/blast_parser/gene_presence_absence_test.tsv,sha256=qCvMkBC-1GuXx83RDh
 test_output/output_with_sample_name.tsv,sha256=NQG7WaxczuWCCsX2a9MUxCCYpbuAirz9gw08OLdEdUo,41
 test_output/test.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
 test_output/test_batch_output.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
-ssi_analysis_result_parsers-0.0.2.dist-info/METADATA,sha256=ABKm6Jap4G1oUCuTy28c2_KcCiu4jj23prFHT_qrvcI,2765
-ssi_analysis_result_parsers-0.0.2.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
-ssi_analysis_result_parsers-0.0.2.dist-info/entry_points.txt,sha256=eG2NzlNDoG__0PPHl3eoKK5EXIz02BGhRX-L2aWgKCY,447
-ssi_analysis_result_parsers-0.0.2.dist-info/top_level.txt,sha256=3q56bBc2Wv2a6ZQ1l_9m66vot2-Qu6tM9tDr3QQ8auM,81
-ssi_analysis_result_parsers-0.0.2.dist-info/RECORD,,
+ssi_analysis_result_parsers-0.0.4.dist-info/METADATA,sha256=r6IJQQ7JgRD_--UlM80lNMH5ZzlxYQCmvaVBIyPhF7k,2765
+ssi_analysis_result_parsers-0.0.4.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
+ssi_analysis_result_parsers-0.0.4.dist-info/entry_points.txt,sha256=eG2NzlNDoG__0PPHl3eoKK5EXIz02BGhRX-L2aWgKCY,447
+ssi_analysis_result_parsers-0.0.4.dist-info/top_level.txt,sha256=3q56bBc2Wv2a6ZQ1l_9m66vot2-Qu6tM9tDr3QQ8auM,81
+ssi_analysis_result_parsers-0.0.4.dist-info/RECORD,,