ssi-analysis-result-parsers 0.0.12__py3-none-any.whl → 0.0.13__py3-none-any.whl

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Files changed (8) hide show
  1. ssi_analysis_result_parsers/Nmeningitidis_parser.py +3 -3
  2. ssi_analysis_result_parsers/__init__.py +1 -1
  3. {ssi_analysis_result_parsers-0.0.12.dist-info → ssi_analysis_result_parsers-0.0.13.dist-info}/METADATA +1 -1
  4. {ssi_analysis_result_parsers-0.0.12.dist-info → ssi_analysis_result_parsers-0.0.13.dist-info}/RECORD +8 -8
  5. {ssi_analysis_result_parsers-0.0.12.dist-info → ssi_analysis_result_parsers-0.0.13.dist-info}/WHEEL +0 -0
  6. {ssi_analysis_result_parsers-0.0.12.dist-info → ssi_analysis_result_parsers-0.0.13.dist-info}/entry_points.txt +0 -0
  7. {ssi_analysis_result_parsers-0.0.12.dist-info → ssi_analysis_result_parsers-0.0.13.dist-info}/licenses/LICENSE +0 -0
  8. {ssi_analysis_result_parsers-0.0.12.dist-info → ssi_analysis_result_parsers-0.0.13.dist-info}/top_level.txt +0 -0
ssi_analysis_result_parsers/Nmeningitidis_parser.py CHANGED
@@ -41,17 +41,17 @@ def extract_meningotype(meningotype_tsv: Path):
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  if meningotype_tsv.exists():
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  try:
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  df = pandas.read_csv(meningotype_tsv, sep="\t")
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- PorA_split = df["PorA"][0].split(",")
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+ PorA_split = df.iloc[0]["PorA"].split(",")
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  VR1 = PorA_split[0]
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  try:
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  VR2 = PorA_split[1]
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  except:
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  VR2 = ""
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  return {
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- "SEROGROUP": df["SEROGROUP"][0],
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+ "SEROGROUP": df.iloc[0]["SEROGROUP"],
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  "VR1": VR1,
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  "VR2": VR2,
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- "FetA": df["FetA"][0],
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+ "FetA": df.iloc[0]["FetA"],
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  }
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  except pandas.errors.EmptyDataError:
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  print(
ssi_analysis_result_parsers/__init__.py CHANGED
@@ -1 +1 @@
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- __version__ = "0.0.11"
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+ __version__ = "0.0.12"
{ssi_analysis_result_parsers-0.0.12.dist-info → ssi_analysis_result_parsers-0.0.13.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ssi_analysis_result_parsers
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- Version: 0.0.12
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+ Version: 0.0.13
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  Summary: TODO
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  Home-page: https://github.com/thej-ssi/ssi_analysis_result_parsers
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  Author: Thor Bech Johannesen
{ssi_analysis_result_parsers-0.0.12.dist-info → ssi_analysis_result_parsers-0.0.13.dist-info}/RECORD RENAMED
@@ -1,8 +1,8 @@
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  ssi_analysis_result_parsers/Ecoli_parser.py,sha256=lKNnx27KqxpX3yv1RAP-sBATMGf9yjfSs4-d50mR2cA,22704
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  ssi_analysis_result_parsers/Legionella_parser.py,sha256=Yp14u8xqItrIb-uVk786K6jlIi-HNfn0wnQMo_R_X1c,6950
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- ssi_analysis_result_parsers/Nmeningitidis_parser.py,sha256=jLYCz9NSPLDt44YM60whEltTeY8jir6N1UVk4UhG85M,7016
3
+ ssi_analysis_result_parsers/Nmeningitidis_parser.py,sha256=z57AbXbZ62P_wKNr7ECBIO1sr68LEPWWl0tLtOFMMMU,7031
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  ssi_analysis_result_parsers/Spyogenes_parser.py,sha256=Cjibp7iKGofjSp-igm-jmjBVkQ6-zxYQWVSZT-Vx3Fo,12731
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- ssi_analysis_result_parsers/__init__.py,sha256=OaIl7v-6zEWEY90Jlh6yoBjO3zWX1oX7RsvqrK3o1TU,23
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+ ssi_analysis_result_parsers/__init__.py,sha256=1SFj-qMOaeO0fOKQaFmYhAKiRwwNda5uWKpYtIcken8,23
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  ssi_analysis_result_parsers/_modidx.py,sha256=rrpJq1GcgPx34ag7bGe6VvBl4v-tC-ErTTvYAjHW7uI,22865
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  ssi_analysis_result_parsers/blast_parser.py,sha256=pIzMGk5-VyTy8uzFncTiIsy80wQxl9NbNiGI_K7XMaM,8658
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  ssi_analysis_result_parsers/core.py,sha256=8CzFMDrGJ24D9aoIebLsG8tx-OxvYJod1cxBITqNfaY,12258
@@ -10,7 +10,7 @@ ssi_analysis_result_parsers/hello_world.py,sha256=jpN94sqYuNHqUbUZMCJ35qGY5iLPB_
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  ssi_analysis_result_parsers/some_string.py,sha256=JwmAXKbX_JgY8UGh4FAu5-7ZjezcAEhq4Q2B73pWp2M,923
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  ssi_analysis_result_parsers/config/config.default.env,sha256=Zt6bfPbVV3rYCksoebX1ruAdFgeD9wqAnKDtswhtJJM,1390
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  ssi_analysis_result_parsers/config/config.default.yaml,sha256=3qgUrUtQpxrzYv7WQaHsvz9dQB0RALKNU0idxv7oRqM,460
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- ssi_analysis_result_parsers-0.0.12.dist-info/licenses/LICENSE,sha256=p6aTb6QIfqyZ2Uux2VjV4F2zthdUSHZOjB4mfwGc7fo,1094
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+ ssi_analysis_result_parsers-0.0.13.dist-info/licenses/LICENSE,sha256=p6aTb6QIfqyZ2Uux2VjV4F2zthdUSHZOjB4mfwGc7fo,1094
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  test_input/.DS_Store,sha256=sdTEvl9DTKPHNPYYjMqDepX7q7ZETlonk21tGEuWLao,6148
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  test_input/empty_file.txt,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  test_input/Ecoli/ERR14229029.res,sha256=AmVZwbiUTjOQLe7SmSKWt9-URdcrsLSxt9hHUh-nFUY,129
@@ -46,8 +46,8 @@ test_output/output_with_sample_name.tsv,sha256=NQG7WaxczuWCCsX2a9MUxCCYpbuAirz9g
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  test_output/test.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
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  test_output/test_batch_output.tsv,sha256=6DGzarXMkUP03Z58vZimc-gu1K2k84zxZLWWF2HROCg,277
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  test_output/Ecoli/KMA_cases_parser.tsv,sha256=Wf3JkSppRN5AK2zRJmFQlwVfCMyJfgyyBpTjb1sK6Uw,586
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- ssi_analysis_result_parsers-0.0.12.dist-info/METADATA,sha256=7gLCEO8s0y9sleizoV_yWq7pZi5WQCNrO6IUOCj-uSE,2766
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- ssi_analysis_result_parsers-0.0.12.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
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- ssi_analysis_result_parsers-0.0.12.dist-info/entry_points.txt,sha256=OixZpyfeqGO7S_8k1ExmGc32EFBt9RX6C1W3H8vZ1K4,913
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- ssi_analysis_result_parsers-0.0.12.dist-info/top_level.txt,sha256=kVBbBavSQeQsoZCMoiur-3tQ_UT5CeO0L3PwjSdM2yQ,96
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- ssi_analysis_result_parsers-0.0.12.dist-info/RECORD,,
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+ ssi_analysis_result_parsers-0.0.13.dist-info/METADATA,sha256=WgVPf67Lwelwff-50gGa3A5E2QI4NDXA-kh0obE_Q7g,2766
50
+ ssi_analysis_result_parsers-0.0.13.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
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+ ssi_analysis_result_parsers-0.0.13.dist-info/entry_points.txt,sha256=OixZpyfeqGO7S_8k1ExmGc32EFBt9RX6C1W3H8vZ1K4,913
52
+ ssi_analysis_result_parsers-0.0.13.dist-info/top_level.txt,sha256=kVBbBavSQeQsoZCMoiur-3tQ_UT5CeO0L3PwjSdM2yQ,96
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+ ssi_analysis_result_parsers-0.0.13.dist-info/RECORD,,