ssb-sgis 0.3.7__py3-none-any.whl → 0.3.9__py3-none-any.whl

sgis/parallel/parallel.py

@@ -1,9 +1,11 @@
 import functools
+import inspect
 import itertools
 import multiprocessing
+from collections.abc import Callable, Collection, Iterable
 from pathlib import Path
 from typing import Any
-from collections.abc import Collection, Callable, Iterable
+
 
 try:
     import dapla as dp
@@ -20,12 +22,19 @@ from ..helpers import LocalFunctionError, dict_zip, dict_zip_union, in_jupyter
 
 
 try:
-    from ..io.dapla import exists, read_geopandas
+    from ..io.dapla_functions import exists, read_geopandas
     from ..io.write_municipality_data import write_municipality_data
 except ImportError:
     pass
 
 
+def turn_args_into_kwargs(func: Callable, args: tuple, index_start: int):
+    if not isinstance(args, tuple):
+        raise TypeError("args should be a tuple (it should not be unpacked with *)")
+    argnames = inspect.getfullargspec(func).args[index_start:]
+    return {name: value for value, name in zip(args, argnames, strict=False)}
+
+
 class Parallel:
     """Run functions in parallell.
 
@@ -51,9 +60,13 @@ class Parallel:
             offered through joblib's Parallel class.
         context: Start method for the processes. Defaults to 'spawn'
             to avoid frozen processes.
+        maxtasksperchild: Number of tasks a worker process can complete before
+            it will exit and be replaced with a fresh worker process, to enable
+            unused resources to be freed. Defaults to 10 to
         **kwargs: Keyword arguments to be passed to either
             multiprocessing.Pool or joblib.Parallel, depending
-            on the backend.
+            on the backend. Not to be confused with the kwargs passed to functions in
+            the map and starmap methods.
     """
 
     def __init__(
@@ -61,9 +74,11 @@ class Parallel:
         processes: int,
         backend: str = "multiprocessing",
         context: str = "spawn",
+        maxtasksperchild: int = 10,
         **kwargs,
     ):
         self.processes = int(processes)
+        self.maxtasksperchild = maxtasksperchild
         self.backend = backend
         self.context = context
         self.kwargs = kwargs
@@ -74,14 +89,17 @@ class Parallel:
         self,
         func: Callable,
         iterable: Collection,
+        args: tuple | None = None,
         kwargs: dict | None = None,
     ) -> list[Any]:
-        """Run functions in parallel with items of an iterable as first arguemnt.
+        """Run functions in parallel with items of an iterable as 0th arguemnt.
 
         Args:
             func: Function to be run.
             iterable: An iterable where each item will be passed to func as
-                first positional argument.
+                0th positional argument.
+            Args: Positional arguments passed to 'func' starting from the 1st argument.
+                The 0th argument will be reserved for the values of 'iterable'.
             kwargs: Keyword arguments passed to 'func'. Must be passed as a dict,
                 not unpacked into separate keyword arguments.
 
@@ -101,14 +119,21 @@ class Parallel:
         >>> results
         [2, 4, 6]
 
-        With kwargs.
+        With args and kwargs.
 
         >>> iterable = [1, 2, 3]
         >>> def x2(x, plus, minus):
         ...     return x * 2 + plus - minus
         >>> p = sg.Parallel(4, backend="loky")
-        >>> results = p.map(x2, iterable, kwargs=dict(plus=2, minus=1))
-        >>> results
+        ...
+        >>> # these three are the same
+        >>> results1 = p.map(x2, iterable, args=(2, 1))
+        >>> results2 = p.map(x2, iterable, kwargs=dict(plus=2, minus=1))
+        >>> results3 = p.map(x2, iterable, args=(2,), kwargs=dict(minus=1))
+        >>> assert results1 == results2 == results3
+        ...
+        >>> results1
+        [3, 5, 7]
 
         If in Jupyter the function should be defined in another module.
         And if using the multiprocessing backend, the code should be
@@ -122,9 +147,15 @@ class Parallel:
         [2, 4, 6]
         """
 
+        if args:
+            # start at index 1, meaning the 0th argument (the iterable) is still available
+            args_as_kwargs = turn_args_into_kwargs(func, args, index_start=1)
+        else:
+            args_as_kwargs = {}
+
         self.validate_execution(func)
 
-        kwargs = self._validate_kwargs(kwargs)
+        kwargs = self._validate_kwargs(kwargs) | args_as_kwargs
 
         func_with_kwargs = functools.partial(func, **kwargs)
 
@@ -141,7 +172,7 @@ class Parallel:
 
         if self.backend == "multiprocessing":
             with multiprocessing.get_context(self.context).Pool(
-                processes, **self.kwargs
+                processes, maxtasksperchild=self.maxtasksperchild, **self.kwargs
             ) as pool:
                 return pool.map(func_with_kwargs, iterable)
 
@@ -154,6 +185,7 @@ class Parallel:
         self,
         func: Callable,
         iterable: Collection[Iterable[Any]],
+        args: tuple | None = None,
         kwargs: dict | None = None,
     ) -> list[Any]:
         """Run functions in parallel where items of the iterable are unpacked.
@@ -165,6 +197,8 @@ class Parallel:
             func: Function to be run.
             iterable: An iterable of iterables, where each item will be
                 unpacked as positional argument to the function.
+            Args: Positional arguments passed to 'func' starting at argument position
+                n + 1, where n is the length of the iterables inside the iterable.
             kwargs: Keyword arguments passed to 'func'. Must be passed as a dict,
                 not unpacked into separate keyword arguments.
 
@@ -184,6 +218,17 @@ class Parallel:
         >>> results
         [3, 5, 7]
 
+        With args and kwargs. Since the iterables inside 'iterable' are of length 2,
+        'args' will start at argument number three, e.i. 'c'.
+
+        >>> iterable = [(1, 2), (2, 3), (3, 4)]
+        >>> def add(a, b, c, *, d):
+        ...     return a + b + c + d
+        >>> p = sg.Parallel(3, backend="loky")
+        >>> results = p.starmap(add, iterable, args=(1,), kwargs={"d": 0.1})
+        >>> results
+        [4.1, 6.1, 8.1]
+
         If in Jupyter the function should be defined in another module.
         And if using the multiprocessing backend, the code should be
         guarded by if __name__ == "__main__".
@@ -196,9 +241,18 @@ class Parallel:
         [3, 5, 7]
 
         """
+        if args:
+            # starting the count at the length of the iterables inside the iterables
+            iterable = list(iterable)
+            args_as_kwargs = turn_args_into_kwargs(
+                func, args, index_start=len(iterable[0])
+            )
+        else:
+            args_as_kwargs = {}
+
         self.validate_execution(func)
 
-        kwargs = self._validate_kwargs(kwargs)
+        kwargs = self._validate_kwargs(kwargs) | args_as_kwargs
 
         func_with_kwargs = functools.partial(func, **kwargs)
 
@@ -215,7 +269,7 @@ class Parallel:
 
         if self.backend == "multiprocessing":
             with multiprocessing.get_context(self.context).Pool(
-                processes, **self.kwargs
+                processes, maxtasksperchild=self.maxtasksperchild, **self.kwargs
             ) as pool:
                 return pool.starmap(func_with_kwargs, iterable)
 

sgis/raster/raster.py

@@ -2,10 +2,10 @@ import numbers
 import re
 import uuid
 import warnings
+from collections.abc import Callable
 from copy import copy, deepcopy
 from json import loads
 from pathlib import Path
-from collections.abc import Callable
 
 import geopandas as gpd
 import matplotlib.pyplot as plt
@@ -73,18 +73,18 @@ class Raster(RasterBase):
 
     Read tif file.
 
-    >>> path = 'https://media.githubusercontent.com/media/statisticsnorway/ssb-sgis/main/tests/testdata/dtm_10.tif'
+    >>> path = 'https://media.githubusercontent.com/media/statisticsnorway/ssb-sgis/main/tests/testdata/raster/dtm_10.tif'
     >>> raster = sg.Raster.from_path(path)
     >>> raster
-    Raster(shape=(1, 201, 201), res=10, crs=ETRS89 / UTM zone 33N (N-E), path=https://media.githubusercontent.com/media/statisticsnorway/ssb-sgis/main/tests/testdata/dtm_10.tif)
+    Raster(shape=(1, 201, 201), res=10, crs=ETRS89 / UTM zone 33N (N-E), path=https://media.githubusercontent.com/media/statisticsnorway/ssb-sgis/main/tests/testdata/raster/dtm_10.tif)
 
     Load the entire image as an numpy ndarray.
     Operations are done in place to save memory.
     The array is stored in the array attribute.
 
-    >>> r.load()
-    >>> r.array[r.array < 0] = 0
-    >>> r.array
+    >>> raster.load()
+    >>> raster.array[raster.array < 0] = 0
+    >>> raster.array
     [[[  0.    0.    0.  ... 158.4 155.6 152.6]
     [  0.    0.    0.  ... 158.  154.8 151.9]
     [  0.    0.    0.  ... 158.5 155.1 152.3]
@@ -95,41 +95,43 @@ class Raster(RasterBase):
 
     Save as tif file.
 
-    >>> r.write("path/to/file.tif")
+    >>> raster.write("path/to/file.tif")
 
     Convert to GeoDataFrame.
 
-    >>> gdf = r.to_gdf(column="elevation")
+    >>> gdf = raster.to_gdf(column="elevation")
     >>> gdf
-           elevation                                           geometry  band
-    0            1.9  POLYGON ((-25665.000 6676005.000, -25665.000 6...     1
-    1           11.0  POLYGON ((-25655.000 6676005.000, -25655.000 6...     1
-    2           18.1  POLYGON ((-25645.000 6676005.000, -25645.000 6...     1
-    3           15.8  POLYGON ((-25635.000 6676005.000, -25635.000 6...     1
-    4           11.6  POLYGON ((-25625.000 6676005.000, -25625.000 6...     1
-    ...          ...                                                ...   ...
-    25096       13.4  POLYGON ((-24935.000 6674005.000, -24935.000 6...     1
-    25097        9.4  POLYGON ((-24925.000 6674005.000, -24925.000 6...     1
-    25098        5.3  POLYGON ((-24915.000 6674005.000, -24915.000 6...     1
-    25099        2.3  POLYGON ((-24905.000 6674005.000, -24905.000 6...     1
-    25100        0.1  POLYGON ((-24895.000 6674005.000, -24895.000 6...     1
+           elevation                                           geometry  band_index
+    0            1.9  POLYGON ((-25665.000 6676005.000, -25665.000 6...           1
+    1           11.0  POLYGON ((-25655.000 6676005.000, -25655.000 6...           1
+    2           18.1  POLYGON ((-25645.000 6676005.000, -25645.000 6...           1
+    3           15.8  POLYGON ((-25635.000 6676005.000, -25635.000 6...           1
+    4           11.6  POLYGON ((-25625.000 6676005.000, -25625.000 6...           1
+    ...          ...                                                ...         ...
+    25096       13.4  POLYGON ((-24935.000 6674005.000, -24935.000 6...           1
+    25097        9.4  POLYGON ((-24925.000 6674005.000, -24925.000 6...           1
+    25098        5.3  POLYGON ((-24915.000 6674005.000, -24915.000 6...           1
+    25099        2.3  POLYGON ((-24905.000 6674005.000, -24905.000 6...           1
+    25100        0.1  POLYGON ((-24895.000 6674005.000, -24895.000 6...           1
 
     The image can also be clipped by a mask while loading.
 
-    >>> small_circle = gdf.centroid.buffer(50)
-    >>> raster = sg.Raster.from_path(path).clip(small_circle, crop=True)
-    Raster(shape=(1, 11, 11), res=10, crs=ETRS89 / UTM zone 33N (N-E), path=https://media.githubusercontent.com/media/statisticsnorway/ssb-sgis/main/tests/testdata/dtm_10.tif)
+    >>> small_circle = raster_as_polygons.unary_union.centroid.buffer(50)
+    >>> raster = sg.Raster.from_path(path).clip(small_circle)
+    Raster(shape=(1, 10, 10), res=10, crs=ETRS89 / UTM zone 33N (N-E), path=https://media.githubusercontent.com/media/statisticsnorway/ssb-sgis/main/tests/testdata/raster/dtm_10.tif)
 
     Construct raster from GeoDataFrame.
     The arrays are put on top of each other in a 3 dimensional array.
 
-    >>> r2 = r.from_gdf(gdf, columns=["elevation", "elevation_x2"], res=20)
-    >>> r2
-    Raster(shape=(2, 100, 100), res=20, crs=ETRS89 / UTM zone 33N (N-E), path=None)
+    >>> raster_as_polygons["elevation_x2"] = raster_as_polygons["elevation"] * 2
+    >>> raster_from_polygons = sg.Raster.from_gdf(raster_as_polygons, columns=["elevation", "elevation_x2"], res=20)
+    >>> raster_from_polygons
+    Raster(shape=(2, 100, 100), res=20, raster_id=-260056673995, crs=ETRS89 / UTM zone 33N (N-E), path=None)
 
     Calculate zonal statistics for each polygon in 'gdf'.
 
-    >>> zonal = r.zonal(gdf, aggfunc=["sum", np.mean])
+    >>> zonal = raster.zonal(raster_as_polygons, aggfunc=["sum", np.mean])
+    >>> zonal
             sum  mean                                           geometry
     0       1.9   1.9  POLYGON ((-25665.000 6676005.000, -25665.000 6...
     1      11.0  11.0  POLYGON ((-25655.000 6676005.000, -25655.000 6...

{ssb_sgis-0.3.7.dist-info → ssb_sgis-0.3.9.dist-info}/METADATA

@@ -1,17 +1,18 @@
 Metadata-Version: 2.1
 Name: ssb-sgis
-Version: 0.3.7
+Version: 0.3.9
 Summary: GIS functions used at Statistics Norway.
 Home-page: https://github.com/statisticsnorway/ssb-sgis
 License: MIT
 Author: Statistics Norway
 Author-email: ort@ssb.no
-Requires-Python: >=3.10,<3.12
+Requires-Python: >=3.10,<4
 Classifier: Development Status :: 3 - Alpha
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
 Classifier: Topic :: Scientific/Engineering :: GIS
 Requires-Dist: branca (>=0.6.0)
 Requires-Dist: folium (>=0.14.0)
@@ -44,6 +45,8 @@ Description-Content-Type: text/markdown
 
 GIS Python tools used in [Statistics Norway](https://www.ssb.no/en).
 
+See documentation [here](https://statisticsnorway.github.io/ssb-sgis/reference/index.html).
+
 [![PyPI](https://img.shields.io/pypi/v/ssb-sgis.svg)][pypi_]
 [![Status](https://img.shields.io/pypi/status/ssb-sgis.svg)][status]
 [![Python Version](https://img.shields.io/pypi/pyversions/ssb-sgis)][python version]
@@ -88,7 +91,7 @@ roads = sg.read_parquet_url(
     "https://media.githubusercontent.com/media/statisticsnorway/ssb-sgis/main/tests/testdata/roads_oslo_2022.parquet"
 )
 
-connected_roads = sg.get_connected_components(roads).query("connected == 1")
+connected_roads = sg.get_connected_components(roads).loc[lambda x: x["connected"] == 1]
 
 directed_roads = sg.make_directed_network_norway(
     connected_roads,

ssb_sgis-0.3.9.dist-info/RECORD

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