sqlite-muninn 0.1.0__py3-none-win_amd64.whl

sqlite_muninn/__init__.py

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+"""sqlite-muninn: HNSW vector search + graph traversal + Node2Vec for SQLite.
+
+Zero-dependency C11 SQLite extension. Three subsystems in one .load:
+HNSW approximate nearest neighbor search, graph traversal TVFs, and Node2Vec.
+"""
+
+import importlib.metadata
+import pathlib
+import sqlite3
+
+_PKG_DIR = pathlib.Path(__file__).parent
+
+__version__ = importlib.metadata.version("sqlite-muninn")
+
+
+def loadable_path() -> str:
+    """Return path to the muninn loadable extension (without file extension).
+
+    SQLite's load_extension() automatically appends .so/.dylib/.dll.
+    Searches in package directory first (wheel install), then repo root (dev / git install).
+    """
+    # Wheel install: binary is inside the package directory
+    pkg_path = _PKG_DIR / "muninn"
+    if any(_PKG_DIR.glob("muninn.*")):
+        return str(pkg_path)
+
+    # Development / git install: binary is in the build directory
+    build_dir = _PKG_DIR.parent / "build"
+    if any(build_dir.glob("muninn.*")):
+        return str(build_dir / "muninn")
+
+    raise FileNotFoundError("muninn extension not found. Build it with: make all")
+
+
+def load(conn: sqlite3.Connection) -> None:
+    """Load muninn into the given SQLite connection.
+
+    The connection must have load_extension enabled:
+        conn.enable_load_extension(True)
+        sqlite_muninn.load(conn)
+        conn.enable_load_extension(False)
+    """
+    conn.load_extension(loadable_path())

sqlite_muninn-0.1.0.dist-info/METADATA

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+Metadata-Version: 2.4
+Name: sqlite-muninn
+Version: 0.1.0
+Summary: HNSW vector search + graph traversal + Node2Vec for SQLite
+License-Expression: MIT
+Project-URL: Homepage, https://github.com/user/sqlite-muninn
+Project-URL: Repository, https://github.com/user/sqlite-muninn
+Keywords: sqlite,vector,hnsw,graph,node2vec,search
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Programming Language :: C
+Classifier: Programming Language :: Python :: 3
+Classifier: Topic :: Database
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Requires-Python: <3.14,>=3.12
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Dynamic: license-file
+
+# sqlite-muninn
+
+<div align="center">
+    <img src="https://joshpeak.net/sqlite-muninn/assets/muninn_logo_transparent.png" alt="Muninn Raven Logo" width=480px/>
+    <p><i>Odin's mythic <a href="https://en.wikipedia.org/wiki/Huginn_and_Muninn">raven of Memory</a>.</i></p>
+</div>
+
+
+
+A zero-dependency C extension for SQLite to add an advanced collection of knowledge graph primitives like Vector Similarity Search, HNSW Indexes, Graph database, Community Detection, Node2Vec capabilities.
+
+**[Documentation](https://neozenith.github.io/sqlite-muninn/)** | **[GitHub](https://github.com/neozenith/sqlite-muninn)**
+
+
+## Features
+
+- **HNSW Vector Index** &mdash; O(log N) approximate nearest neighbor search with incremental insert/delete
+- **Graph Traversal** &mdash; BFS, DFS, shortest path, connected components, PageRank on any edge table
+- **Centrality Measures** &mdash; Degree, betweenness (Brandes), and closeness centrality with weighted/temporal support
+- **Community Detection** &mdash; Leiden algorithm for discovering graph communities with modularity scoring
+- **Node2Vec** &mdash; Learn structural node embeddings from graph topology, store in HNSW for similarity search
+- **Zero dependencies** &mdash; Pure C11, compiles to a single `.dylib`/`.so`/`.dll`
+- **SIMD accelerated** &mdash; ARM NEON and x86 SSE distance functions
+
+## Build
+
+Requires SQLite development headers and a C11 compiler.
+
+```bash
+# macOS (Homebrew SQLite recommended)
+brew install sqlite
+make all
+
+# Linux
+sudo apt-get install libsqlite3-dev
+make all
+
+# Run tests
+make test        # C unit tests
+make test-python # Python integration tests
+make test-all    # Both
+```
+
+## Quick Start
+
+```sql
+.load ./muninn
+
+-- Create an HNSW vector index
+CREATE VIRTUAL TABLE my_vectors USING hnsw_index(
+    dimensions=384, metric='cosine', m=16, ef_construction=200
+);
+
+-- Insert vectors
+INSERT INTO my_vectors (rowid, vector) VALUES (1, ?);  -- 384-dim float32 blob
+
+-- KNN search
+SELECT rowid, distance FROM my_vectors
+WHERE vector MATCH ?query AND k = 10 AND ef_search = 64;
+
+-- Graph traversal on any edge table
+SELECT node, depth FROM graph_bfs
+WHERE edge_table = 'friendships' AND src_col = 'user_a'
+  AND dst_col = 'user_b' AND start_node = 'alice' AND max_depth = 3
+  AND direction = 'both';
+
+-- Connected components
+SELECT node, component_id, component_size FROM graph_components
+WHERE edge_table = 'friendships' AND src_col = 'user_a' AND dst_col = 'user_b';
+
+-- PageRank
+SELECT node, rank FROM graph_pagerank
+WHERE edge_table = 'citations' AND src_col = 'citing' AND dst_col = 'cited'
+  AND damping = 0.85 AND iterations = 20;
+
+-- Betweenness centrality (find bridge nodes)
+SELECT node, centrality FROM graph_betweenness
+WHERE edge_table = 'friendships' AND src_col = 'user_a' AND dst_col = 'user_b'
+  AND direction = 'both'
+ORDER BY centrality DESC LIMIT 10;
+
+-- Community detection (Leiden algorithm)
+SELECT node, community_id, modularity FROM graph_leiden
+WHERE edge_table = 'friendships' AND src_col = 'user_a' AND dst_col = 'user_b';
+
+-- Learn structural embeddings from graph topology
+SELECT node2vec_train(
+    'friendships', 'user_a', 'user_b', 'my_vectors',
+    64, 1.0, 1.0, 10, 80, 5, 5, 0.025, 5
+);
+```
+
+## Examples
+
+Self-contained examples in the [`examples/`](examples/) directory:
+
+| Example | Demonstrates |
+|---------|-------------|
+| [Semantic Search](examples/semantic_search/) | HNSW index, KNN queries, point lookup, delete |
+| [Movie Recommendations](examples/movie_recommendations/) | Vector similarity for content-based recommendations |
+| [Social Network](examples/social_network/) | Graph TVFs on a social graph (BFS, components, PageRank) |
+| [Research Papers](examples/research_papers/) | Citation graph analysis with Node2Vec embeddings |
+| [Transit Routes](examples/transit_routes/) | Shortest path and graph traversal on route networks |
+
+```bash
+make all
+python examples/semantic_search/example.py
+```
+
+## API Reference
+
+### HNSW Virtual Table (`hnsw_index`)
+
+```sql
+CREATE VIRTUAL TABLE name USING hnsw_index(
+    dimensions=N,            -- vector dimensionality (required)
+    metric='l2',             -- 'l2' | 'cosine' | 'inner_product'
+    m=16,                    -- max connections per node per layer
+    ef_construction=200      -- beam width during index construction
+);
+```
+
+**Columns:**
+
+| Column | Type | Hidden | Description |
+|--------|------|--------|-------------|
+| `rowid` | INTEGER | Yes | User-assigned ID for joining with application tables |
+| `vector` | BLOB | No | `float32[dim]` &mdash; input for INSERT, MATCH constraint for search |
+| `distance` | REAL | No | Computed distance (output only, during search) |
+| `k` | INTEGER | Yes | Top-k parameter (search constraint) |
+| `ef_search` | INTEGER | Yes | Search beam width (search constraint) |
+
+**Operations:**
+
+```sql
+-- Insert
+INSERT INTO t (rowid, vector) VALUES (42, ?blob);
+
+-- KNN search
+SELECT rowid, distance FROM t WHERE vector MATCH ?query AND k = 10;
+
+-- Point lookup
+SELECT vector FROM t WHERE rowid = 42;
+
+-- Delete (with automatic neighbor reconnection)
+DELETE FROM t WHERE rowid = 42;
+
+-- Drop (removes index and all shadow tables)
+DROP TABLE t;
+```
+
+**Shadow tables** (auto-managed):
+- `{name}_config` &mdash; HNSW parameters
+- `{name}_nodes` &mdash; stored vectors and level assignments
+- `{name}_edges` &mdash; the proximity graph (usable by graph TVFs)
+
+### Graph Table-Valued Functions
+
+All graph TVFs work on **any** existing SQLite table with source/target columns. Table and column names are validated against SQL injection.
+
+#### `graph_bfs` / `graph_dfs`
+
+Breadth-first or depth-first traversal from a start node.
+
+```sql
+SELECT node, depth, parent FROM graph_bfs
+WHERE edge_table = 'edges'
+  AND src_col = 'src'
+  AND dst_col = 'dst'
+  AND start_node = 'node-42'
+  AND max_depth = 5
+  AND direction = 'forward';   -- 'forward' | 'reverse' | 'both'
+```
+
+| Output Column | Type | Description |
+|---------------|------|-------------|
+| `node` | TEXT | Node identifier |
+| `depth` | INTEGER | Hop distance from start |
+| `parent` | TEXT | Parent node in traversal tree (NULL for start) |
+
+#### `graph_shortest_path`
+
+Unweighted (BFS) or weighted (Dijkstra) shortest path.
+
+```sql
+-- Unweighted
+SELECT node, distance, path_order FROM graph_shortest_path
+WHERE edge_table = 'edges' AND src_col = 'src' AND dst_col = 'dst'
+  AND start_node = 'A' AND end_node = 'Z' AND weight_col IS NULL;
+
+-- Weighted (Dijkstra)
+SELECT node, distance, path_order FROM graph_shortest_path
+WHERE edge_table = 'edges' AND src_col = 'src' AND dst_col = 'dst'
+  AND start_node = 'A' AND end_node = 'Z' AND weight_col = 'weight';
+```
+
+| Output Column | Type | Description |
+|---------------|------|-------------|
+| `node` | TEXT | Node on the path |
+| `distance` | REAL | Cumulative distance from start |
+| `path_order` | INTEGER | Position in path (0-indexed) |
+
+#### `graph_components`
+
+Connected components via Union-Find with path compression.
+
+```sql
+SELECT node, component_id, component_size FROM graph_components
+WHERE edge_table = 'edges' AND src_col = 'src' AND dst_col = 'dst';
+```
+
+| Output Column | Type | Description |
+|---------------|------|-------------|
+| `node` | TEXT | Node identifier |
+| `component_id` | INTEGER | Component index (0-based) |
+| `component_size` | INTEGER | Number of nodes in this component |
+
+#### `graph_pagerank`
+
+Iterative power method PageRank with configurable damping and iterations.
+
+```sql
+SELECT node, rank FROM graph_pagerank
+WHERE edge_table = 'edges' AND src_col = 'src' AND dst_col = 'dst'
+  AND damping = 0.85        -- optional, default 0.85
+  AND iterations = 20;      -- optional, default 20
+```
+
+| Output Column | Type | Description |
+|---------------|------|-------------|
+| `node` | TEXT | Node identifier |
+| `rank` | REAL | PageRank score (sums to ~1.0) |
+
+#### `graph_degree`
+
+Degree centrality for all nodes.
+
+```sql
+SELECT node, in_degree, out_degree, degree, centrality FROM graph_degree
+WHERE edge_table = 'edges' AND src_col = 'src' AND dst_col = 'dst';
+```
+
+| Output Column | Type | Description |
+|---------------|------|-------------|
+| `node` | TEXT | Node identifier |
+| `in_degree` | REAL | Count (or weighted sum) of incoming edges |
+| `out_degree` | REAL | Count (or weighted sum) of outgoing edges |
+| `degree` | REAL | Total degree (in + out) |
+| `centrality` | REAL | Normalized degree centrality |
+
+Optional constraints: `weight_col`, `direction`, `normalized`, `timestamp_col`, `time_start`, `time_end`.
+
+#### `graph_betweenness`
+
+Betweenness centrality via Brandes' O(VE) algorithm.
+
+```sql
+SELECT node, centrality FROM graph_betweenness
+WHERE edge_table = 'edges' AND src_col = 'src' AND dst_col = 'dst'
+  AND direction = 'both';
+```
+
+| Output Column | Type | Description |
+|---------------|------|-------------|
+| `node` | TEXT | Node identifier |
+| `centrality` | REAL | Betweenness centrality score |
+
+Optional constraints: `weight_col`, `direction`, `normalized`, `timestamp_col`, `time_start`, `time_end`.
+
+#### `graph_closeness`
+
+Closeness centrality with Wasserman-Faust normalization for disconnected graphs.
+
+```sql
+SELECT node, centrality FROM graph_closeness
+WHERE edge_table = 'edges' AND src_col = 'src' AND dst_col = 'dst'
+  AND direction = 'both';
+```
+
+| Output Column | Type | Description |
+|---------------|------|-------------|
+| `node` | TEXT | Node identifier |
+| `centrality` | REAL | Closeness centrality score |
+
+Optional constraints: `weight_col`, `direction`, `timestamp_col`, `time_start`, `time_end`.
+
+#### `graph_leiden`
+
+Community detection via the Leiden algorithm (Traag et al., 2019).
+
+```sql
+SELECT node, community_id, modularity FROM graph_leiden
+WHERE edge_table = 'edges' AND src_col = 'src' AND dst_col = 'dst';
+```
+
+| Output Column | Type | Description |
+|---------------|------|-------------|
+| `node` | TEXT | Node identifier |
+| `community_id` | INTEGER | Community assignment (0-based) |
+| `modularity` | REAL | Global modularity score of the partition |
+
+Optional constraints: `weight_col`, `resolution` (default 1.0), `timestamp_col`, `time_start`, `time_end`.
+
+### `node2vec_train()`
+
+Learn vector embeddings from graph structure using biased random walks (Node2Vec) and Skip-gram with Negative Sampling (SGNS).
+
+```sql
+SELECT node2vec_train(
+    edge_table,       -- name of edge table
+    src_col,          -- source column name
+    dst_col,          -- destination column name
+    output_table,     -- HNSW table to store embeddings (must exist)
+    dimensions,       -- embedding size (must match HNSW table)
+    p,                -- return parameter (1.0 = uniform/DeepWalk)
+    q,                -- in-out parameter (1.0 = uniform/DeepWalk)
+    num_walks,        -- walks per node
+    walk_length,      -- max steps per walk
+    window_size,      -- SGNS context window
+    negative_samples, -- negative samples per positive
+    learning_rate,    -- initial learning rate (decays linearly)
+    epochs            -- training epochs
+);
+-- Returns: number of nodes embedded
+```
+
+**p, q parameter guide:**
+
+| Setting | Walk Behavior | Best For |
+|---------|--------------|----------|
+| p=1, q=1 | Uniform (DeepWalk) | General structural similarity |
+| Low p (0.25) | BFS-like, stays local | Community/cluster detection |
+| Low q (0.5) | DFS-like, explores far | Structural role similarity |
+
+## Benchmarks
+
+The project includes a comprehensive benchmark suite comparing muninn against other SQLite extensions across real-world workloads.
+
+**Vector search** benchmarks compare against [sqlite-vector](https://github.com/nicepkg/sqlite-vector), [sqlite-vec](https://github.com/asg017/sqlite-vec), and [vectorlite](https://github.com/nicepkg/vectorlite) using 3 embedding models (MiniLM, MPNet, BGE-Large) and 2 text datasets (AG News, Wealth of Nations) at scales up to 250K vectors.
+
+**Graph traversal** benchmarks compare muninn TVFs against recursive CTEs and [GraphQLite](https://github.com/nicepkg/graphqlite) on synthetic graphs (Erdos-Renyi, Barabasi-Albert) at scales up to 100K nodes.
+
+Results include interactive Plotly charts for insert throughput, search latency, recall, database size, and tipping-point analysis. See the [full benchmark results](https://neozenith.github.io/sqlite-muninn/benchmarks/) on the documentation site.
+
+```bash
+make -C benchmarks help       # List all benchmark targets
+make -C benchmarks analyze    # Generate charts and reports from existing results
+```
+
+## Project Structure
+
+```
+src/                  C11 source (extension entry point, HNSW, graph TVFs, Node2Vec)
+test/                 C unit tests (custom minimal framework)
+pytests/              Python integration tests (pytest)
+examples/             Self-contained usage examples
+benchmarks/
+  scripts/            Benchmark runners and analysis scripts
+  charts/             Plotly JSON chart specs (committed for docs site)
+  results/            JSONL benchmark data (generated, not committed)
+docs/                 MkDocs documentation source
+```
+
+## Documentation
+
+Full documentation is published at **[neozenith.github.io/sqlite-muninn](https://neozenith.github.io/sqlite-muninn/)** via MkDocs Material with interactive Plotly charts.
+
+```bash
+make docs-serve    # Local dev server with live reload
+make docs-build    # Build static site
+```
+
+## Research References
+
+| Feature | Paper |
+|---------|-------|
+| HNSW | Malkov & Yashunin, TPAMI 2020 |
+| MN-RU insert repair | arXiv:2407.07871, 2024 |
+| Patience early termination | SISAP 2025 |
+| Betweenness centrality | Brandes, J. Math. Sociol. 2001 |
+| Leiden community detection | Traag, Waltman & van Eck, Sci. Rep. 2019 |
+| Node2Vec | Grover & Leskovec, KDD 2016 |
+| SGNS | Mikolov et al., 2013 |
+
+## License
+
+MIT. See [LICENSE](LICENSE).

sqlite_muninn-0.1.0.dist-info/RECORD

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+sqlite_muninn/muninn.dll,sha256=GI1pcQvQEGw73qUe15fFlzjQm6oBDs60sHNiiGJxm2o,208384
+sqlite_muninn-0.1.0.dist-info/licenses/LICENSE,sha256=QyyYwcmZwbq4FumXkfaKrlEDCv-bgsCNGVWuCkIlZCc,1107
+sqlite_muninn-0.1.0.dist-info/METADATA,sha256=sK9jGD14-qBljsoMzZA5inZiyREEpBtvhTv_v5wvhxA,14827
+sqlite_muninn-0.1.0.dist-info/WHEEL,sha256=I7N5ZCUvoGccb6ODwz-ZRxcDg9ip88rBxOm2U6c41XQ,97
+sqlite_muninn-0.1.0.dist-info/top_level.txt,sha256=bHCxOUoDiepH3tv0QWQA25FwkMccry8BHRtOb2Ncae0,14
+sqlite_muninn-0.1.0.dist-info/RECORD,,

sqlite_muninn-0.1.0.dist-info/WHEEL

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+Wheel-Version: 1.0
+Generator: setuptools (82.0.0)
+Root-Is-Purelib: true
+Tag: py3-none-win_amd64
+

sqlite_muninn-0.1.0.dist-info/licenses/LICENSE

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+MIT License
+
+Copyright (c) 2025 sqlite-vec-graph contributors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

sqlite_muninn-0.1.0.dist-info/top_level.txt

@@ -0,0 +1 @@
+sqlite_muninn