sqlite-graph-memory 0.3.0__py3-none-any.whl → 0.3.2__py3-none-any.whl

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@@ -21,6 +21,6 @@ the indexer and the reranker will tell you what is missing instead of failing
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21
  on an ``ImportError`` at startup.
22
22
  """
23
23
 
24
- __version__ = "0.3.0"
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+ __version__ = "0.3.2"
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25
 
26
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  __all__ = ["__version__"]
@@ -9,12 +9,18 @@ USAGE:
9
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  python brain_ask.py --graph "question" # vector + graph expansion (Associative)
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  python brain_ask.py --ab "question" # run BOTH, diff, log to SQLite (ab_recall)
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  python brain_ask.py --ask "question" # emit a context bundle for an LLM agent
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+ python brain_ask.py --ppr --graph "question" # + PageRank lane in the ORDERING (see ppr.py)
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13
 
13
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  Config (env, all optional):
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  BRAIN_INDEX_DIR dir holding the embedding index (default: ./index)
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  TURNSTATE_DB SQLite db for A/B telemetry (default: ./turnstate.db)
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  BRAIN_ANSWER_OUT file to mirror the answer into (default: ./_brain_answer.txt)
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18
  BRAIN_AB_JSON if set, --ab also writes a structured JSON diff to this path
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+ SGM_PPR=1 same as --ppr: fuse personalized PageRank over [[wikilinks]] with the
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+ reranker by RRF, reranker top 5 protected (off by default)
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+ SGM_NO_STAR_PROMPT=1 never print the one-time GitHub star line after --ab
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+ SGM_CONFIG_DIR where that line's once-per-machine marker lives
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+ (default: $XDG_CONFIG_HOME or ~/.config, /sqlite-graph-memory)
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  """
19
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  import os, re, sys, pickle, datetime, sqlite3, time
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  from pathlib import Path
@@ -187,20 +193,113 @@ def expand_1hop(sims, meta, base_order, by_base=None, ghops=GHOPS, gmax=GMAX):
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193
 
188
194
 
189
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  def rerank_candidates(ce, query, cand, meta, topn=TOPN):
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- """Cross-encoder rerank of candidate chunks -> [(chunk index, score)], best first."""
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+ """Cross-encoder rerank of candidate chunks -> [(chunk index, score)], best first.
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+ topn=None returns the whole reranked list (the PPR fusion needs the tail)."""
191
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  pairs = [(query, meta[i]['title'] + '. ' + meta[i]['snippet']) for i in cand]
192
199
  sc = ce.predict(pairs) if len(pairs) else []
193
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  return sorted(zip(cand, sc), key=lambda x: -x[1])[:topn]
194
201
 
195
202
 
203
+ def _ppr():
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+ try:
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+ from sqlite_graph_memory import ppr
206
+ except ImportError: # run as a loose script next to ppr.py
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+ import ppr
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+ return ppr
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+
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+
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+ def ppr_enabled(env=None):
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+ """True when SGM_PPR asks for the PageRank lane. Never raises."""
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+ try:
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+ return _ppr().enabled(env)
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+ except Exception:
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+ return False
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+
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+
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+ def ppr_lane(meta, sims, base_order):
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+ """PPR file order for this query, or [] (lane off) on ANY failure, including import."""
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+ try:
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+ return _ppr().ppr_file_order(meta, sims, base_order)
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+ except Exception as e:
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+ sys.stderr.write('PPR lane fell back to reranker order (%s)\n' % str(e)[:140])
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+ return []
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+
227
+
228
+ def fuse_ppr(ranked_full, meta, ppr_stems, topn=TOPN):
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+ """Reranker list fused with the PPR order, top `topn`. Any failure: reranker top `topn`."""
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+ try:
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+ return _ppr().fuse_after_rerank(ranked_full, meta, ppr_stems, topn)
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+ except Exception as e:
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+ sys.stderr.write('PPR fusion fell back to reranker order (%s)\n' % str(e)[:140])
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+ return list(ranked_full)[:topn]
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+
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+
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+ STAR_URL = 'https://github.com/tonydzi/sqlite-graph-memory'
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+ STAR_MARKER = 'star_prompt_shown'
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+
240
+
241
+ def _config_dir(env=None):
242
+ """Per-user config folder: SGM_CONFIG_DIR, else $XDG_CONFIG_HOME or ~/.config."""
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+ env = os.environ if env is None else env
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+ if env.get('SGM_CONFIG_DIR'):
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+ return Path(os.path.expanduser(env['SGM_CONFIG_DIR']))
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+ base = env.get('XDG_CONFIG_HOME') or os.path.join(os.path.expanduser('~'), '.config')
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+ return Path(base) / 'sqlite-graph-memory'
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+
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+
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+ def maybe_star_prompt(stream=None, env=None, interactive=None):
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+ """After a successful --ab run, ask for a star once per machine, on stderr.
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+
253
+ Silent when SGM_NO_STAR_PROMPT is set (anything but '' or '0'), when CI is set
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+ (anything but '', '0' or 'false'), when BRAIN_AB_JSON is set (a machine reads the
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+ result), when stdout or stderr is not a terminal, or when the marker file exists.
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+ The marker is created with O_EXCL, so two first runs at once print one line.
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+ CRASH-SAFETY: any failure here is swallowed; the answer was already printed.
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+ Returns True only if the line was printed.
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+ """
260
+ env = os.environ if env is None else env
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+ stream = sys.stderr if stream is None else stream
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+ try:
263
+ if env.get('SGM_NO_STAR_PROMPT', '') not in ('', '0'):
264
+ return False
265
+ if env.get('CI', '').strip().lower() not in ('', '0', 'false'):
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+ return False
267
+ if env.get('BRAIN_AB_JSON'):
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+ return False
269
+ if interactive is None:
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+ interactive = sys.stdout.isatty() and stream.isatty()
271
+ if not interactive:
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+ return False
273
+ marker = _config_dir(env) / STAR_MARKER
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+ marker.parent.mkdir(parents=True, exist_ok=True)
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+ try:
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+ fd = os.open(str(marker), os.O_CREAT | os.O_EXCL | os.O_WRONLY, 0o644)
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+ except FileExistsError:
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+ return False
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+ with os.fdopen(fd, 'w', encoding='utf-8') as f:
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+ f.write(time.strftime('%Y-%m-%d %H:%M:%S') + '\n')
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+ try:
282
+ stream.write('\nIf the A/B diff above was useful, a star helps other people find it: '
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+ '%s (shown once; SGM_NO_STAR_PROMPT=1 silences it)\n' % STAR_URL)
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+ stream.flush()
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+ except Exception:
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+ try: marker.unlink() # the user never saw it: ask again next time
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+ except Exception: pass
288
+ return False
289
+ return True
290
+ except Exception:
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+ return False
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+
293
+
196
294
  def main():
197
295
  args = sys.argv[1:]
198
296
  ask = '--ask' in args
199
297
  graph = '--graph' in args; ab = '--ab' in args
200
- flags = {'--ask', '--graph', '--ab'}
298
+ flags = {'--ask', '--graph', '--ab', '--ppr'}
201
299
  query = ' '.join(a for a in args if a not in flags)
202
300
  if not query or not EMB.exists():
203
- print('need an embedding index (%s) and a query — run index_notes.py first' % EMB); return
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+ sys.stderr.write('need an embedding index (%s) and a query — run index_notes.py first\n' % EMB)
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+ raise SystemExit(1)
204
303
 
205
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  dev = pick_device()
206
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  emb, meta = load_index()
@@ -223,10 +322,23 @@ def main():
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322
  added = expand_1hop(sims, meta, base_order)
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323
  graph_order = base_order + added; graph_set = set(added)
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324
 
325
+ # PageRank lane (opt-in): a second ORDERING, not a candidate source. Crash-safe like the
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+ # hop: any failure leaves ppr_stems empty and every list below keeps the reranker's order.
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+ # Not in --ab: the A/B answers "does the 1-hop graph help?", and its rows in ab_recall
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+ # carry no PPR column, so a lane on both arms would be logged as plain vector vs graph.
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+ ppr_stems = []
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+ if ab and ('--ppr' in args or ppr_enabled()):
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+ sys.stderr.write('PPR lane is not applied in --ab (score it with eval/run_eval.py --ppr)\n')
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+ elif order and ('--ppr' in args or ppr_enabled()):
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+ ppr_stems = ppr_lane(meta, sims, base_order)
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+
226
335
  # rerank on the matched chunk (precise)
227
336
  ce = load_reranker(dev)
228
337
  def rerank(cand):
229
- return rerank_candidates(ce, query, cand, meta)
338
+ if not ppr_stems:
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+ return rerank_candidates(ce, query, cand, meta)
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+ full = rerank_candidates(ce, query, cand, meta, topn=None) # fusion needs the tail
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+ return fuse_ppr(full, meta, ppr_stems, TOPN)
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342
 
231
343
  # --ab: run BOTH paths in ONE process, diff, log. Answers "does graph REALLY help?"
232
344
  if ab:
@@ -279,6 +391,7 @@ def main():
279
391
  pass
280
392
  _out = Path(os.getenv('BRAIN_ANSWER_OUT', '_brain_answer.txt'))
281
393
  _out.write_text(text, encoding='utf-8'); print(text)
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+ maybe_star_prompt()
282
395
  return
283
396
 
284
397
  # GATE: wiki-graph helps THEME queries, hurts ENTITY/name queries -> skip graph for entities.
@@ -287,7 +400,7 @@ def main():
287
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  sys.stderr.write("wiki-graph gated OFF (entity-like query) -> Direct only\n")
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401
  order = graph_order if (graph and not gated) else base_order
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402
  reranked = rerank(order)
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- scope = 'all' + (' /graph+%d' % len(graph_set) if graph else '')
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+ scope = 'all' + (' /graph+%d' % len(graph_set) if graph else '') + (' /ppr' if ppr_stems else '')
291
404
  lines = [f'QUERY: {query}', f'(scope={scope}; e5 {len(order)} files -> rerank; {len(meta)} chunks)', '']
292
405
  if ask:
293
406
  lines.append('=== CONTEXT BUNDLE (paste to your agent) ===\n')
@@ -22,6 +22,26 @@ Config (env, optional):
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22
  import sys, os, json, subprocess, tempfile
23
23
  from pathlib import Path
24
24
 
25
+ # Where the recall subprocess runs and where the package root resides.
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+ # The server deliberately shells out instead of importing brain_ask: a model load
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+ # that segfaults or runs out of memory then kills a child process and returns an
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+ # MCP error, rather than taking the server down mid-session.
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+ ROOT_DIR = Path(__file__).resolve().parent
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+
31
+ # Ensure the package root (src/) is on sys.path when invoked directly as a script
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+ # from a source checkout without an active editable install.
33
+ _SRC_DIR = str(ROOT_DIR.parent)
34
+ if _SRC_DIR not in sys.path:
35
+ sys.path.insert(0, _SRC_DIR)
36
+
37
+ try:
38
+ from sqlite_graph_memory import __version__
39
+ except ImportError:
40
+ try:
41
+ from . import __version__
42
+ except (ImportError, ValueError):
43
+ __version__ = "0.3.2"
44
+
25
45
  # Ensure UTF-8 for stdio communication on all platforms (including Windows console)
26
46
  try:
27
47
  sys.stdin.reconfigure(encoding='utf-8')
@@ -30,20 +50,17 @@ try:
30
50
  except Exception:
31
51
  pass
32
52
 
33
- # Where the recall subprocess runs. The server deliberately shells out instead
34
- # of importing brain_ask: a model load that segfaults or runs out of memory then
35
- # kills a child process and returns an MCP error, rather than taking the server
36
- # down mid-session.
37
- ROOT_DIR = Path(__file__).resolve().parent
38
-
39
53
 
40
54
  def _brain_ask_cmd():
41
- """How to invoke brain_ask — a guaranteed sibling module inside this package."""
55
+ """How to invoke brain_ask — prefers the sibling script when present, falls back to module."""
56
+ sibling = ROOT_DIR / "brain_ask.py"
57
+ if sibling.exists():
58
+ return [sys.executable, str(sibling)]
42
59
  return [sys.executable, "-m", "sqlite_graph_memory.brain_ask"]
43
60
 
44
61
  SERVER_INFO = {
45
62
  "name": "sqlite-graph-memory",
46
- "version": "0.3.0"
63
+ "version": __version__
47
64
  }
48
65
 
49
66
  TOOLS = [
@@ -109,6 +126,9 @@ def run_recall(query: str, mode: str = "associative") -> tuple[str, bool]:
109
126
 
110
127
  try:
111
128
  call_env = {**os.environ, "BRAIN_ANSWER_OUT": str(temp_ans_file)}
129
+ src_dir = str(ROOT_DIR.parent)
130
+ existing_pp = call_env.get("PYTHONPATH", "")
131
+ call_env["PYTHONPATH"] = f"{src_dir}{os.pathsep}{existing_pp}" if existing_pp else src_dir
112
132
  res = subprocess.run(
113
133
  cmd,
114
134
  cwd=str(ROOT_DIR),
@@ -147,6 +167,15 @@ def run_recall(query: str, mode: str = "associative") -> tuple[str, bool]:
147
167
 
148
168
  def handle_request(req: dict) -> dict:
149
169
  """Handle a single JSON-RPC 2.0 MCP request."""
170
+ if not isinstance(req, dict):
171
+ return {
172
+ "jsonrpc": "2.0",
173
+ "id": None,
174
+ "error": {
175
+ "code": -32600,
176
+ "message": "Invalid Request: expected JSON object"
177
+ }
178
+ }
150
179
  method = req.get("method")
151
180
  req_id = req.get("id")
152
181
 
@@ -243,9 +272,11 @@ def main():
243
272
  mode = "ab"
244
273
  query_parts = [a for a in sys.argv[1:] if a not in flags]
245
274
  q = " ".join(query_parts) if query_parts else "agent memory"
246
- text, _ = run_recall(q, mode=mode)
275
+ text, is_err = run_recall(q, mode=mode)
247
276
  print(f"=== MCP Test Query: {q} (mode={mode}) ===")
248
277
  print(text)
278
+ if is_err:
279
+ sys.exit(1)
249
280
  return
250
281
 
251
282
 
@@ -0,0 +1,234 @@
1
+ # -*- coding: utf-8 -*-
2
+ """ppr.py: personalized PageRank over the [[wikilink]] graph, fused with the reranker by RRF.
3
+
4
+ WHY IT EXISTS. On the home vault's frozen gold set (2026-09-16, 60 bridge questions) 97% of
5
+ the correct bridge answers were already in the candidate pool, and Recall@12 in that diagnosis
6
+ run was 0.225 (the README's 0.251 is the graph-mode baseline of the final measurement):
7
+ the cross-encoder dropped them, because the relation is structural, not textual. Adding more
8
+ candidates (more hops, larger GMAX) cannot fix that. This module gives the graph a vote in the
9
+ ORDERING instead: PPR seeded by the dense hits yields a structural file order, and that order
10
+ is fused with the reranker's order by Reciprocal Rank Fusion. Ranks, not scores, because
11
+ cosine, cross-encoder logits and PageRank mass are on incomparable scales.
12
+
13
+ THE HEAD IS PROTECTED. The first PPR_HEAD (5) positions of the reranker are never touched. When
14
+ a query names one thing, the right answer is already first, and any shuffling drops it (home
15
+ vault: without the protection title nDCG@12 fell by 0.076; with head=5 it rose by 0.006 at the
16
+ same bridge gain). PPR only reorders candidates already in the pool; it never brings new files,
17
+ because a file outside the pool has no chunk and no score to show.
18
+
19
+ OFF BY DEFAULT. Turn it on with SGM_PPR=1 (or `sgm-ask --ppr`). The home pipeline runs it on by
20
+ default; the package does not, because the measurement behind it was taken on one vault.
21
+
22
+ CRASH-SAFETY, same contract as the graph hop: no graph, no edges, a PPR failure or a fusion
23
+ failure each return the reranker's order unchanged and write one line to stderr. Worst case you
24
+ get the old result, never an empty or broken recall.
25
+
26
+ COST on the home vault (7.8k files, ~40k edges): building the graph 0.5 s once per process
27
+ (cached in memory by an index fingerprint), PPR itself ~3 ms per query.
28
+
29
+ Ported from the maintainer's home module brain_graph.py (2026-09-16) for issue #51.
30
+ """
31
+ import hashlib
32
+ import os
33
+ import sys
34
+ from pathlib import Path
35
+
36
+ import numpy as np
37
+
38
+ PPR_ALPHA = 0.85 # damping: share of mass that walks the edges. High on purpose: the gain is
39
+ # in moving AWAY from the hits to their neighbours (0.5 gave half the bridge gain)
40
+ PPR_ITERS = 20 # power iteration; converges in <10 on a graph this size
41
+ PPR_SEED_TOPK = 15 # how many best dense FILES seed the personalization (same as GHOPS)
42
+ PPR_TOPM = 10 # how many PPR files enter the fusion. More is WORSE: a long structural tail
43
+ # dilutes the top (topm=30 gave bridge +0.053, topm=10 gave +0.103)
44
+ PPR_HEAD = 5 # reranker positions the fusion never touches
45
+ RRF_K = 60 # RRF constant (Cormack et al. 2009)
46
+
47
+ _CACHE = {} # index fingerprint -> Graph, in process memory only
48
+
49
+
50
+ def enabled(env=None):
51
+ """True when SGM_PPR is set to 1/on/yes/true. Default: off."""
52
+ env = os.environ if env is None else env
53
+ return str(env.get('SGM_PPR', '')).strip().lower() in ('1', 'on', 'yes', 'true')
54
+
55
+
56
+ def _links_in(path):
57
+ # One wikilink parser for the whole package: the one the graph hop uses.
58
+ try:
59
+ from sqlite_graph_memory.brain_ask import _links_in as f
60
+ except ImportError: # run as a loose script next to brain_ask.py
61
+ from brain_ask import _links_in as f
62
+ return f(path)
63
+
64
+
65
+ class Graph:
66
+ """File-level wikilink graph in CSR form: node = lowercase file stem."""
67
+
68
+ def __init__(self, stems, idx, indptr, indices):
69
+ self.stems = stems
70
+ self.idx = idx
71
+ self.indptr = indptr
72
+ self.indices = indices
73
+ self.n_edges = int(len(indices))
74
+
75
+ def ppr(self, seed, alpha=None, iters=None):
76
+ """Personalized PageRank: p = alpha * A^T p + (1 - alpha) * seed.
77
+
78
+ Dangling nodes (no outgoing links) return their mass to the seed instead of spreading
79
+ it over the whole graph, otherwise the unlinked half of a vault would wash out the
80
+ personalization.
81
+ """
82
+ alpha = PPR_ALPHA if alpha is None else alpha
83
+ iters = PPR_ITERS if iters is None else iters
84
+ n = len(self.stems)
85
+ s = np.asarray(seed, dtype='float64')
86
+ tot = s.sum()
87
+ if n == 0 or tot <= 0:
88
+ return np.zeros(n, dtype='float64')
89
+ s = s / tot
90
+ if self.n_edges == 0:
91
+ return s # no edges: PPR is the personalization itself
92
+ p = s.copy()
93
+ deg = np.diff(self.indptr)
94
+ live = deg > 0
95
+ src = np.repeat(np.arange(n), deg)
96
+ for _ in range(iters):
97
+ contrib = np.zeros(n, dtype='float64')
98
+ contrib[live] = p[live] / deg[live]
99
+ nxt = np.zeros(n, dtype='float64')
100
+ np.add.at(nxt, self.indices, contrib[src])
101
+ dangling = float(p[~live].sum())
102
+ p = alpha * nxt + (alpha * dangling + (1.0 - alpha)) * s
103
+ return p
104
+
105
+
106
+ def _fingerprint(meta):
107
+ """sha256 over (path, sha) of every chunk, so the cache expires when the index changes."""
108
+ h = hashlib.sha256()
109
+ for m in meta:
110
+ h.update(str(m.get('path', '')).encode('utf-8', 'replace'))
111
+ h.update(b'\x1f')
112
+ h.update(str(m.get('sha', '')).encode('utf-8', 'replace'))
113
+ h.update(b'\x1e')
114
+ return h.hexdigest()
115
+
116
+
117
+ def build(meta):
118
+ """Build the file graph from the notes' outgoing [[wikilinks]] (self-links and dups dropped).
119
+
120
+ A node is a file NAME, because that is what a wikilink addresses: a/index.md and
121
+ b/index.md are one node, and the outgoing links of both files become its edges.
122
+ """
123
+ try:
124
+ fp = _fingerprint(meta)
125
+ except Exception:
126
+ fp = None
127
+ if fp and fp in _CACHE:
128
+ return _CACHE[fp]
129
+ stems, paths, idx = [], [], {}
130
+ for m in meta:
131
+ st = Path(m['path']).stem.lower()
132
+ if st not in idx:
133
+ idx[st] = len(stems)
134
+ stems.append(st)
135
+ paths.append([])
136
+ if m['path'] not in paths[idx[st]]:
137
+ paths[idx[st]].append(m['path'])
138
+ indptr = np.zeros(len(stems) + 1, dtype='int64')
139
+ indices = []
140
+ for u, files in enumerate(paths):
141
+ seen = set()
142
+ for p in files:
143
+ for tgt in _links_in(p):
144
+ v = idx.get(tgt.strip().lower())
145
+ if v is None or v == u or v in seen:
146
+ continue
147
+ seen.add(v)
148
+ indices.append(v)
149
+ indptr[u + 1] = len(indices)
150
+ g = Graph(stems, idx, indptr, np.asarray(indices, dtype='int64'))
151
+ if fp:
152
+ _CACHE[fp] = g
153
+ return g
154
+
155
+
156
+ def ppr_file_order(meta, sims, base_order, graph=None, topm=None, seed_topk=None):
157
+ """File stems ordered by personalized PageRank, seeded by the dense hits in base_order.
158
+
159
+ Seed weight = best chunk cosine + 1, so it is non-negative (PageRank needs a non-negative
160
+ teleport, cosine lives in [-1, 1]). Returns [] on any failure; the caller keeps its order.
161
+ """
162
+ topm = PPR_TOPM if topm is None else topm
163
+ seed_topk = PPR_SEED_TOPK if seed_topk is None else seed_topk
164
+ try:
165
+ g = build(meta) if graph is None else graph
166
+ if not g.stems or g.n_edges == 0:
167
+ return []
168
+ seed = np.zeros(len(g.stems), dtype='float64')
169
+ seen, used = set(), 0
170
+ for i in base_order:
171
+ st = Path(meta[i]['path']).stem.lower()
172
+ if st in seen:
173
+ continue
174
+ seen.add(st)
175
+ u = g.idx.get(st)
176
+ if u is None:
177
+ continue
178
+ seed[u] = max(seed[u], float(sims[i]) + 1.0) # seed starts at 0: never negative
179
+ used += 1
180
+ if used >= seed_topk:
181
+ break
182
+ if seed.sum() <= 0:
183
+ return []
184
+ p = g.ppr(seed)
185
+ top = np.argsort(-p, kind='stable')[:max(1, topm)]
186
+ return [g.stems[int(u)] for u in top if p[int(u)] > 0]
187
+ except Exception as e:
188
+ sys.stderr.write('PPR lane failed (%s) -> reranker order unchanged\n' % str(e)[:140])
189
+ return []
190
+
191
+
192
+ def rrf_fuse(*ranked_lists, k=RRF_K):
193
+ """Reciprocal Rank Fusion: score(d) = sum 1 / (k + rank_d + 1). Ties break by item value."""
194
+ score, order = {}, []
195
+ for lst in ranked_lists:
196
+ for rank, i in enumerate(lst):
197
+ if i not in score:
198
+ score[i] = 0.0
199
+ order.append(i)
200
+ score[i] += 1.0 / (k + rank + 1)
201
+ order.sort(key=lambda i: (-score[i], i))
202
+ return order
203
+
204
+
205
+ def fuse_after_rerank(ranked_idx, meta, ppr_stems, topn, head=None):
206
+ """Pipeline hook: reorder [(chunk index, score)] from the reranker, then cut to topn.
207
+
208
+ `ranked_idx` must be the FULL reranked list, not the top-12: the point is to lift the right
209
+ neighbour out of the tail, which a fusion that only sees the top-12 cannot do. Empty PPR
210
+ returns the first topn exactly as given.
211
+
212
+ Every item is kept: two notes with the same file name in different folders are one graph
213
+ node (wikilinks address notes by name) but stay two results, so the output is never
214
+ shorter than the input. Positions, not names, go into RRF, so a tie breaks toward the
215
+ reranker's earlier position instead of the alphabetical order of file names.
216
+ """
217
+ if not ppr_stems or not ranked_idx:
218
+ return list(ranked_idx)[:topn]
219
+ try:
220
+ items = list(ranked_idx)
221
+ head = PPR_HEAD if head is None else head
222
+ stems = [Path(meta[i]['path']).stem.lower() for i, _ in items]
223
+ kept = set(stems[:head])
224
+ first = {}
225
+ for p in range(head, len(items)):
226
+ first.setdefault(stems[p], p - head)
227
+ ppr_pos = [first[s] for s in ppr_stems if s in first and s not in kept]
228
+ if not ppr_pos:
229
+ return items[:topn]
230
+ fused = rrf_fuse(list(range(len(items) - head)), ppr_pos)
231
+ return (items[:head] + [items[head + p] for p in fused])[:topn]
232
+ except Exception as e:
233
+ sys.stderr.write('PPR fusion failed (%s) -> reranker order\n' % str(e)[:140])
234
+ return list(ranked_idx)[:topn]
@@ -0,0 +1,217 @@
1
+ #!/usr/bin/env python3
2
+ """sgm-stats -- four health numbers for a folder of linked markdown notes.
3
+
4
+ sgm-stats <notes_dir> [--json] [--today YYYY-MM-DD] [--threshold-* N ...]
5
+
6
+ Measures the graph the retriever actually walks: the same note filter as the indexer
7
+ (``iter_notes``: no dot-directories, no sync-conflict copies) and the same wikilink parser
8
+ and target resolution as ``brain_ask`` (``_links_in``, basename match, case-insensitive).
9
+ A second parser would report on a graph recall never sees.
10
+
11
+ orphan rate pages with no inbound link ok <5% warn 5-15% fail >15%
12
+ avg degree resolved outgoing links per page ok 3-8 warn 2-3 / 8-10 fail <2 or >10
13
+ main component share of pages in the largest ok >=80% warn below
14
+ weakly connected component
15
+ stale concepts concept pages whose `updated` warn >50%
16
+ (or `date`) is older than 90 days
17
+
18
+ Pages are keyed by their path inside the vault, so two notes with the same name in
19
+ different folders stay two pages; a ``[[name]]`` link reaches every page with that name,
20
+ the same candidates ``brain_ask.index_by_basename`` keeps. Links to pages that do not
21
+ exist and links from a page to itself are not edges. A concept page is one with
22
+ ``type: concept`` in its frontmatter or one that lives in a folder named ``concepts``
23
+ inside the vault. Stale share is over all concept pages; undated ones (no date, or a
24
+ date that is not a real day) are named in the detail and never count as stale.
25
+ Verdicts are taken on the same rounded value the report prints.
26
+
27
+ Exit code: 0 all ok, 1 any warn, 2 any fail -- so it can sit in cron as a watchdog.
28
+ Zero model calls, zero network, stdlib + the two sibling modules.
29
+ """
30
+ import argparse
31
+ import datetime
32
+ import json
33
+ import re
34
+ import sys
35
+ from collections import defaultdict
36
+ from pathlib import Path
37
+
38
+ from sqlite_graph_memory.brain_ask import _links_in
39
+ from sqlite_graph_memory.index_notes import FM_RX, iter_notes, read_note
40
+
41
+ DEFAULTS = {
42
+ 'orphan_warn': 5.0, 'orphan_fail': 15.0,
43
+ 'degree_ok_min': 3.0, 'degree_ok_max': 8.0,
44
+ 'degree_warn_min': 2.0, 'degree_warn_max': 10.0,
45
+ 'component_ok': 80.0,
46
+ 'stale_days': 90, 'stale_warn': 50.0,
47
+ }
48
+ RANK = {'ok': 0, 'warn': 1, 'fail': 2, 'n/a': 0}
49
+
50
+ TYPE_RX = re.compile(r"""(?m)^type:\s*["']?([^"'\n]+?)["']?\s*$""")
51
+ UPDATED_RX = re.compile(r"""(?m)^updated:\s*["']?(\d{4}-\d{2}-\d{2})""")
52
+ DATE_RX = re.compile(r"""(?m)^date:\s*["']?(\d{4}-\d{2}-\d{2})""")
53
+
54
+
55
+ class EmptyVault(Exception):
56
+ """No note under the folder: an unmounted or wrong path, reported as fail."""
57
+
58
+
59
+ def build_graph(notes_dir):
60
+ """(pages, edges): pages = {relative path without .md: Path},
61
+ edges = {(src, dst)} between real pages."""
62
+ root = Path(notes_dir)
63
+ pages, by_stem = {}, defaultdict(list)
64
+ for p in iter_notes(root):
65
+ key = p.relative_to(root).with_suffix('').as_posix()
66
+ pages[key] = p
67
+ by_stem[p.stem.lower()].append(key)
68
+ edges = set()
69
+ for src, path in pages.items():
70
+ for tgt in _links_in(path):
71
+ for dst in by_stem.get(tgt.lower(), ()):
72
+ if dst != src:
73
+ edges.add((src, dst))
74
+ return pages, edges
75
+
76
+
77
+ def largest_component(pages, edges):
78
+ """Size of the largest weakly connected component (union-find)."""
79
+ parent = {p: p for p in pages}
80
+
81
+ def find(x):
82
+ while parent[x] != x:
83
+ parent[x] = parent[parent[x]]
84
+ x = parent[x]
85
+ return x
86
+
87
+ for a, b in edges:
88
+ ra, rb = find(a), find(b)
89
+ if ra != rb:
90
+ parent[ra] = rb
91
+ sizes = defaultdict(int)
92
+ for p in pages:
93
+ sizes[find(p)] += 1
94
+ return max(sizes.values()) if sizes else 0, len(sizes)
95
+
96
+
97
+ def _parse_day(s):
98
+ try:
99
+ return datetime.date.fromisoformat(s)
100
+ except ValueError: # 2026-02-30: date-shaped, not a day
101
+ return None
102
+
103
+
104
+ def concept_dates(pages):
105
+ """[(key, date or None)] for every concept page."""
106
+ out = []
107
+ for key, path in pages.items():
108
+ text = read_note(path) or ''
109
+ m = FM_RX.match(text)
110
+ fm = m.group(1) if m else ''
111
+ t = TYPE_RX.search(fm)
112
+ is_concept = (t and t.group(1).strip().lower() == 'concept') or \
113
+ any(part.lower() == 'concepts' for part in Path(key).parent.parts)
114
+ if not is_concept:
115
+ continue
116
+ d = UPDATED_RX.search(fm) or DATE_RX.search(fm)
117
+ out.append((key, _parse_day(d.group(1)) if d else None))
118
+ return out
119
+
120
+
121
+ def verdict_orphan(v, th):
122
+ return 'fail' if v > th['orphan_fail'] else 'warn' if v >= th['orphan_warn'] else 'ok'
123
+
124
+
125
+ def verdict_degree(v, th):
126
+ if th['degree_ok_min'] <= v <= th['degree_ok_max']:
127
+ return 'ok'
128
+ if th['degree_warn_min'] <= v <= th['degree_warn_max']:
129
+ return 'warn'
130
+ return 'fail'
131
+
132
+
133
+ def compute(notes_dir, today=None, th=None):
134
+ th = {**DEFAULTS, **(th or {})}
135
+ today = today or datetime.date.today()
136
+ pages, edges = build_graph(notes_dir)
137
+ n = len(pages)
138
+ if n == 0:
139
+ raise EmptyVault(f"sgm-stats: no notes under {notes_dir}")
140
+
141
+ indeg = defaultdict(int)
142
+ for _, dst in edges:
143
+ indeg[dst] += 1
144
+ orphans = sorted(p for p in pages if indeg[p] == 0)
145
+ orphan_pct = round(100.0 * len(orphans) / n, 1)
146
+ degree = round(len(edges) / n, 2)
147
+ main, n_comp = largest_component(pages, edges)
148
+ main_pct = round(100.0 * main / n, 1)
149
+
150
+ concepts = concept_dates(pages)
151
+ dated = [(s, d) for s, d in concepts if d is not None]
152
+ cutoff = today - datetime.timedelta(days=int(th['stale_days']))
153
+ stale = sorted(s for s, d in dated if d < cutoff)
154
+ if concepts:
155
+ stale_pct = round(100.0 * len(stale) / len(concepts), 1)
156
+ stale_v = 'warn' if stale_pct > th['stale_warn'] else 'ok'
157
+ else:
158
+ stale_pct, stale_v = None, 'n/a'
159
+
160
+ metrics = [
161
+ {'name': 'orphan_rate', 'value': orphan_pct, 'unit': '%',
162
+ 'verdict': verdict_orphan(orphan_pct, th),
163
+ 'detail': f"{len(orphans)} of {n} pages have no inbound link",
164
+ 'examples': orphans[:5]},
165
+ {'name': 'avg_degree', 'value': degree, 'unit': 'links/page',
166
+ 'verdict': verdict_degree(degree, th),
167
+ 'detail': f"{len(edges)} resolved links over {n} pages"},
168
+ {'name': 'main_component', 'value': main_pct, 'unit': '%',
169
+ 'verdict': 'ok' if main_pct >= th['component_ok'] else 'warn',
170
+ 'detail': f"{main} of {n} pages; {n_comp} component{'' if n_comp == 1 else 's'}"},
171
+ {'name': 'stale_concepts',
172
+ 'value': stale_pct, 'unit': '%',
173
+ 'verdict': stale_v,
174
+ 'detail': (f"{len(stale)} of {len(concepts)} concept pages older than "
175
+ f"{int(th['stale_days'])} days (as of {today.isoformat()})"
176
+ + (f"; {len(concepts) - len(dated)} undated" if len(dated) < len(concepts) else '')
177
+ if concepts else "no concept pages"),
178
+ 'examples': stale[:5]},
179
+ ]
180
+ worst = max(RANK[m['verdict']] for m in metrics)
181
+ return {'notes_dir': str(notes_dir), 'pages': n, 'metrics': metrics,
182
+ 'verdict': ['ok', 'warn', 'fail'][worst], 'exit_code': worst}
183
+
184
+
185
+ def render(report):
186
+ lines = [f"{report['pages']} pages in {report['notes_dir']}", '']
187
+ for m in report['metrics']:
188
+ val = 'n/a' if m['value'] is None else f"{m['value']}{'%' if m['unit'] == '%' else ''}"
189
+ lines.append(f"{m['verdict'].upper():<5} {m['name']:<15} {val:>7} {m['detail']}")
190
+ lines += ['', f"verdict: {report['verdict']}"]
191
+ return '\n'.join(lines)
192
+
193
+
194
+ def main(argv=None):
195
+ ap = argparse.ArgumentParser(prog='sgm-stats', description=__doc__.split('\n\n')[0])
196
+ ap.add_argument('notes_dir')
197
+ ap.add_argument('--json', action='store_true', help='machine-readable output')
198
+ ap.add_argument('--today', type=datetime.date.fromisoformat,
199
+ help='date to measure staleness against (YYYY-MM-DD; default: today)')
200
+ for key, val in DEFAULTS.items():
201
+ ap.add_argument('--threshold-' + key.replace('_', '-'), dest=key, type=float,
202
+ default=val, help=f'default {val}')
203
+ a = ap.parse_args(argv)
204
+ if not Path(a.notes_dir).is_dir():
205
+ ap.error(f"not a directory: {a.notes_dir}")
206
+ th = {k: getattr(a, k) for k in DEFAULTS}
207
+ try:
208
+ report = compute(a.notes_dir, today=a.today, th=th)
209
+ except EmptyVault as e:
210
+ print(e, file=sys.stderr)
211
+ return 2
212
+ print(json.dumps(report, indent=2, ensure_ascii=False) if a.json else render(report))
213
+ return report['exit_code']
214
+
215
+
216
+ if __name__ == '__main__':
217
+ sys.exit(main())
@@ -1,12 +1,12 @@
1
1
  Metadata-Version: 2.5
2
2
  Name: sqlite-graph-memory
3
- Version: 0.3.0
3
+ Version: 0.3.2
4
4
  Summary: Associative memory for LLM agents: Graph RAG over a folder of markdown notes, in one SQLite file, with no server to run.
5
5
  Project-URL: Homepage, https://github.com/tonydzi/sqlite-graph-memory
6
6
  Project-URL: Repository, https://github.com/tonydzi/sqlite-graph-memory
7
7
  Project-URL: Changelog, https://github.com/tonydzi/sqlite-graph-memory/blob/main/CHANGELOG.md
8
8
  Project-URL: Issues, https://github.com/tonydzi/sqlite-graph-memory/issues
9
- Author: Anton Dziatkovskii
9
+ Author: Anton Dziatkovskii, Vardhman Gupta
10
10
  License: MIT License
11
11
 
12
12
  Copyright (c) 2026 Palo Alto AI Research Lab
@@ -44,22 +44,81 @@ Requires-Python: >=3.9
44
44
  Requires-Dist: numpy>=1.24
45
45
  Provides-Extra: embeddings
46
46
  Requires-Dist: numpy<2; (sys_platform == 'darwin' and platform_machine == 'x86_64') and extra == 'embeddings'
47
+ Requires-Dist: sentence-transformers<5; (sys_platform == 'darwin' and platform_machine == 'x86_64') and extra == 'embeddings'
47
48
  Requires-Dist: sentence-transformers>=2.6; extra == 'embeddings'
49
+ Requires-Dist: transformers<4.50; (sys_platform == 'darwin' and platform_machine == 'x86_64') and extra == 'embeddings'
48
50
  Description-Content-Type: text/markdown
49
51
 
50
- # sqlite-graph-memory
52
+ # sqlite-graph-memory: persistent memory for Claude Code, Cursor and Codex over your own markdown notes
53
+
54
+ <!-- mcp-name: io.github.tonydzi/sqlite-graph-memory -->
55
+
56
+ [![PyPI](https://img.shields.io/pypi/v/sqlite-graph-memory)](https://pypi.org/project/sqlite-graph-memory/) [![tests](https://img.shields.io/github/actions/workflow/status/tonydzi/sqlite-graph-memory/tests.yml?label=tests)](https://github.com/tonydzi/sqlite-graph-memory/actions/workflows/tests.yml) [![MCP Registry](https://img.shields.io/badge/MCP%20Registry-io.github.tonydzi%2Fsqlite--graph--memory-blue)](https://registry.modelcontextprotocol.io/v0/servers?search=sqlite-graph-memory) [![License: MIT](https://img.shields.io/badge/license-MIT-green)](LICENSE)
57
+
58
+ Long-term memory for coding agents that lives in the notes you already keep: an MCP server
59
+ and a CLI over any folder of markdown, Obsidian vaults included. `pip install`, point it at
60
+ the folder, and Claude Code, Cursor, Codex or any other MCP client can recall from it.
51
61
 
52
62
  **Your agent forgets everything between sessions, and plain vector search gives it back
53
- flat, unrelated chunks. This gives it associative recall over your own markdown notes —
54
- one SQLite file, no graph database, no ETL pass, no server.**
63
+ flat, unrelated chunks. This gives it associative recall over your own markdown notes:
64
+ vector search finds the entry points, the `[[wikilinks]]` you already wrote are the graph.
65
+ One SQLite file, no graph database, no ETL pass, no server.**
66
+
67
+ ## Three commands
55
68
 
56
69
  ```bash
57
- pip install sqlite-graph-memory
70
+ pip install 'sqlite-graph-memory[embeddings]'
71
+ sgm-index ./notes
72
+ sgm-ask --ab "In which programming language is the tool behind Project Ouzel written?"
58
73
  ```
59
74
 
60
- > The first PyPI release has not landed yet (the publish workflow is in place).
61
- > Until it does: `pip install git+https://github.com/tonydzi/sqlite-graph-memory`
62
- > — same package, same five commands.
75
+ `./notes` is any folder of markdown notes. To get exactly the output below, use the
76
+ 202-note synthetic vault from this repo (it is not inside the pip package):
77
+
78
+ ```bash
79
+ git clone --depth 1 https://github.com/tonydzi/sqlite-graph-memory && cp -R sqlite-graph-memory/bench/vault ./notes
80
+ ```
81
+
82
+ Real output, top 5 of 12:
83
+
84
+ ```
85
+ --- DIRECT memory (vector) ---
86
+ 1. [ 1.66] project-ouzel
87
+ 2. [ -1.33] project-avocet
88
+ 3. [ -1.79] tool-cobbleset
89
+ 4. [ -2.44] meeting-2025-10-21-lighthouse-sync
90
+ 5. [ -2.70] person-severin-ibarrondo
91
+
92
+ --- ASSOCIATIVE memory (vector+graph) ---
93
+ 1. [ 1.66] project-ouzel
94
+ 2. [ 1.14] tool-lanternfish <== +graph
95
+ 3. [ -1.33] project-avocet
96
+ 4. [ -1.79] tool-cobbleset
97
+ 5. [ -2.44] meeting-2025-10-21-lighthouse-sync
98
+ ```
99
+
100
+ The answer lives in `tool-lanternfish` ("Lanternfish is written in Elixir"). The question
101
+ never names Lanternfish, so the vector pass does not find it in the top 12 at all.
102
+ `project-ouzel` links to it, so one graph hop puts it second.
103
+
104
+ If that hop found something your vector search missed, a
105
+ [star](https://github.com/tonydzi/sqlite-graph-memory) is how other people with a notes
106
+ folder find this repo. `sgm-ask --ab` asks the same once per machine, in a terminal only;
107
+ `SGM_NO_STAR_PROMPT=1` turns it off.
108
+
109
+ That is the idea in one query, and it is not a blanket win. On this same vault vector-only
110
+ ranks ahead of graph mode overall; the numbers are in [`bench/`](bench/README.md). `--ab`
111
+ exists so you can measure which one wins on your own notes.
112
+
113
+ **From any MCP client** (Claude Desktop, Cursor, Zed, Windsurf): `sgm-mcp` after the install
114
+ above, or `uvx --with 'sqlite-graph-memory[embeddings]' sqlite-graph-memory`. Set
115
+ `BRAIN_INDEX_DIR` to the `index` folder `sgm-index` wrote. Config:
116
+ [`examples/mcp-config.json`](examples/mcp-config.json). Claude Code:
117
+ `claude mcp add sqlite-graph-memory -e BRAIN_INDEX_DIR=/path/to/index -- sgm-mcp`.
118
+ Codex: a `[mcp_servers.sqlite-graph-memory]` table in `~/.codex/config.toml` with
119
+ `command = "sgm-mcp"`. Agents that read files first: [`llms.txt`](llms.txt).
120
+
121
+ ## What it is
63
122
 
64
123
  Graph RAG on SQLite for AI agents — a working pilot, not a framework. It is the extracted
65
124
  memory layer of a personal "second brain" agent setup: vector search finds the entry
@@ -144,12 +203,13 @@ an edge table only when hop depth or corpus size demands it.
144
203
 
145
204
  - No entity lane. The production setup has an extra retrieval lane over people/project
146
205
  cards; it is too entangled with personal data to publish.
147
- - No incremental indexing and no packaging. There IS an eval suite now — see
206
+ - No incremental indexing (tracked in the issues). Packaging exists since v0.3.0 (`pip install sqlite-graph-memory`). There IS an eval suite now — see
148
207
  [Measure before you swap](#measure-before-you-swap--eval) — but it scores retrieval on
149
208
  wikilink-derived gold, which is weak supervision and says so out loud. Test coverage is uneven:
150
- `index_notes.py`, `brain_ask.py` and `mcp_server.py` have unit tests, `turnstate_hook.py`
151
- has none. Run `pytest -q` for the current count rather than trusting a number written in
152
- prose here — that is how this file ended up claiming "no tests" while seven were passing.
209
+ `index_notes.py`, `brain_ask.py` and `mcp_server.py` have unit tests, and
210
+ `turnstate_hook.py` has write-path coverage. Run `pytest -q` for the current count rather
211
+ than trusting a number written in prose here — that is how this file ended up claiming
212
+ "no tests" while seven were passing.
153
213
  The status line above says **pilot** on purpose.
154
214
 
155
215
  ## Quickstart
@@ -236,6 +296,26 @@ board with one adapter file and a pull request: [bench/CONTRIBUTING.md](bench/CO
236
296
  CI recomputes every submitted number from the per-question outputs, so a typed-in number
237
297
  cannot get onto the board.
238
298
 
299
+ ## Health check — `sgm-stats`
300
+
301
+ Four numbers about the link graph itself, no model and no index needed. It reads the notes with
302
+ the same filter and the same `[[wikilink]]` parser as recall, so it measures the graph `--graph`
303
+ actually walks. Thresholds follow [second-brain-os metrics](https://github.com/undefined-ui/second-brain-os/blob/main/docs/05-graphs/metrics.md);
304
+ each is a `--threshold-*` flag. Exit code 0 ok, 1 warn, 2 fail, so it can sit in cron.
305
+
306
+ ```text
307
+ $ sgm-stats bench/vault --today 2026-10-20
308
+ 202 pages in bench/vault
309
+
310
+ FAIL orphan_rate 26.2% 53 of 202 pages have no inbound link
311
+ OK avg_degree 4.65 940 resolved links over 202 pages
312
+ OK main_component 100.0% 202 of 202 pages; 1 component
313
+ WARN stale_concepts 100.0% 12 of 12 concept pages older than 90 days (as of 2026-10-20)
314
+ ```
315
+
316
+ The synthetic bench vault fails the orphan check for a plain reason: its 40 meeting and 12 decision notes link out and nothing
317
+ links back to them. `--json` gives the same report with the first orphan and stale page names.
318
+
239
319
  ## Measure before you swap — `eval/`
240
320
 
241
321
  Every "obvious" upgrade to a RAG pipeline — a newer embedder, a stronger reranker, hybrid
@@ -297,6 +377,17 @@ of guessing — 97% of the correct `bridge` answers were *already in the candida
297
377
  cross-encoder was dropping them, because the relation is structural, not textual. Widening
298
378
  retrieval, the obvious fix, would have done nothing at all.
299
379
 
380
+ That lane ships in the package as `src/sqlite_graph_memory/ppr.py`, **off by default**: turn it
381
+ on with `SGM_PPR=1` or `sgm-ask --ppr`, and score it with `python eval/run_eval.py --gold ...
382
+ --ppr`, which adds a third mode next to `vector` and `graph`. The numbers above were measured on
383
+ the graph pool, so the matching command is `sgm-ask --graph --ppr`; `--ppr` alone reorders the
384
+ vector pool, and `--ab` leaves the lane out so its A/B log stays vector against graph. Any failure in it falls back to
385
+ the reranker's order, like the graph hop. Be clear about what that reproduces: the bridge
386
+ numbers above came from the maintainer's home vault and home pipeline on 2026-09-16, and they
387
+ have not been re-run from the published package. The code is the same algorithm with the same
388
+ constants (alpha 0.85, 10 PPR files, top 5 protected), but your vault will give your numbers,
389
+ and `bench/` does not score this lane yet.
390
+
300
391
  Seven other changes were rejected by the same ruler, under one rule fixed in advance:
301
392
  **a regression worse than 0.01 nDCG@12 on any class reverts the change.**
302
393
 
@@ -306,10 +397,10 @@ Seven other changes were rejected by the same ruler, under one rule fixed in adv
306
397
  | Qwen3-Embedding-0.6B | body Recall 0.767 -> 0.683; reindex 2863 s vs 333 s -> **rejected** |
307
398
  | bge-reranker-v2-m3 | −0.011…−0.018 nDCG on every class except English (+0.041) -> **rejected** |
308
399
  | Qwen3-Reranker-0.6B | title −0.111 nDCG at 12x the cost -> **rejected** |
309
- | BM25 + RRF hybrid | temporal −0.035 -> **merged switched off** |
400
+ | BM25 + RRF hybrid | temporal −0.035 -> **merged switched off** (in the home pipeline, not in this package) |
310
401
  | heading-path prefix in every chunk | body −0.023, temporal −0.035 -> **reverted** |
311
402
  | `sqlite-vec` (vec0) | full scan 11.99 s vs 0.14 s for a plain SQLite table, and its ANN missed 1.2 hits of 60 -> vectors live in SQLite, **the extension does not** |
312
- | bi-temporal demotion of superseded notes | temporal +0.130 nDCG on a 41-question temporal set, but title −0.012 -> **merged behind a flag, default off** |
403
+ | bi-temporal demotion of superseded notes | temporal +0.130 nDCG on a 41-question temporal set, but title −0.012 -> **merged behind a flag, default off** (in the home pipeline, not in this package) |
313
404
 
314
405
  None of those verdicts is a claim about the models. They are claims about *this corpus with
315
406
  this ruler*, which is the only kind of claim a swap decision actually needs — and the reason
@@ -331,7 +422,7 @@ while the metric is broken never tested the metric.
331
422
 
332
423
  ## Roadmap
333
424
 
334
- **Now — [v0.1.1](https://github.com/tonydzi/sqlite-graph-memory/releases).**
425
+ **Now — [latest release](https://github.com/tonydzi/sqlite-graph-memory/releases/latest)** (v0.3.1 on PyPI and in the MCP Registry as of 2026-10-19).
335
426
  The pilot as it runs daily: retrieval pipeline, per-turn ledger and A/B telemetry, all in
336
427
  `brain_ask.py` and `turnstate_hook.py`, plus the bi-temporal design note. Known defects live in
337
428
  the [tracker](https://github.com/tonydzi/sqlite-graph-memory/issues) rather than in footnotes
@@ -369,9 +460,10 @@ Both are set as constants (`E5_MODEL`, `RERANK_MODEL`) in `brain_ask.py` and sma
369
460
  to run on a laptop GPU; swap freely, since nothing in the pipeline depends on these
370
461
  specific models.
371
462
 
372
- ## Cite this work
463
+ ## Maintainers
373
464
 
374
- If this repo shows up in your research, cite it via [CITATION.cff](CITATION.cff) (GitHub's "Cite this repository" button). Academic identity: Anton Dzyatkovsky publishes as **Anton Dziatkovskii** ([ORCID 0000-0001-7408-3054](https://orcid.org/0000-0001-7408-3054)).
465
+ - **Anton Dziatkovskii** ([@tonydzi](https://github.com/tonydzi)): retrieval pipeline, ledger, bench, releases.
466
+ - **Vardhman Gupta** ([@Kaap10](https://github.com/Kaap10)): the MCP server (`sgm-mcp`, PRs #8, #10, #14) and its tests; reviews on `mcp_server.py` route to him via CODEOWNERS.
375
467
 
376
468
  ## AI contributors
377
469
 
@@ -383,7 +475,7 @@ content** — no decorative credits. Lab-wide policy, one source for every repo:
383
475
 
384
476
  ## Cite this work
385
477
 
386
- The paper about this system — retrieval design, pilot telemetry, and the query-class-stratified evaluation protocol — is published: [DOI 10.5281/zenodo.22639718](https://doi.org/10.5281/zenodo.22639718) (preprint, CC BY 4.0). Machine-readable citation: [CITATION.cff](CITATION.cff).
478
+ The paper about this system — retrieval design, pilot telemetry, and the query-class-stratified evaluation protocol — is published: [DOI 10.5281/zenodo.22639718](https://doi.org/10.5281/zenodo.22639718) (preprint, CC BY 4.0). Machine-readable citation: [CITATION.cff](CITATION.cff) (GitHub's "Cite this repository" button). Academic identity: Anton Dzyatkovsky publishes as **Anton Dziatkovskii** ([ORCID 0000-0001-7408-3054](https://orcid.org/0000-0001-7408-3054)).
387
479
 
388
480
  ## License
389
481
 
@@ -0,0 +1,14 @@
1
+ sqlite_graph_memory/__init__.py,sha256=UjsgczAXDPxFURyM2QPQpy5D1LYuVFJ8x-7KWPMKsHY,1151
2
+ sqlite_graph_memory/brain_ask.py,sha256=v3Xn3uczigPxHvsfzoKtZOHmJdMwDjK9ZdP7HKUHkN4,19161
3
+ sqlite_graph_memory/index_notes.py,sha256=Hmt0_VVJHS-zXhPPw9h2te8iG1W48f1tJ_H0ALt9aLk,5333
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+ sqlite_graph_memory/mcp_server.py,sha256=rYrEUVVnQ5KfZLGIt1Pcpm_6eGZIR37KDKDVSBtilWU,9848
5
+ sqlite_graph_memory/ppr.py,sha256=L7VSAiliXr8j3PH2hQqKbdgm08BPm6pZkLcckoMxAro,10001
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+ sqlite_graph_memory/schema.sql,sha256=8aySXKw3Azaxyzqbd76mKTfOaDP7FlpkLXtgwA8ZVK4,2543
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+ sqlite_graph_memory/turnstate_hook.py,sha256=fypGmUcHQkzlRN74tvIG07lr9uAXpp2GjetqthkuMc8,8641
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+ sqlite_graph_memory/turnstate_show.py,sha256=IED7fmJQM5VgBNwxmEoNSZtujRmWja-qVPg5ckbWVnY,2909
9
+ sqlite_graph_memory/vault_stats.py,sha256=QYNGck556RDyLIVFH1C864su5tWehep1DHE21sSTi9g,8596
10
+ sqlite_graph_memory-0.3.2.dist-info/METADATA,sha256=ZZNMig7G0ZP5F0vHv7CPLLEXUpvQBWmWx6p6XTic3ME,32837
11
+ sqlite_graph_memory-0.3.2.dist-info/WHEEL,sha256=W3fkpkm7-wf9vBI5Z-7s0eWkeM-spu78I8Neb98DeEg,87
12
+ sqlite_graph_memory-0.3.2.dist-info/entry_points.txt,sha256=ggzirSEagKB7DZnMli9NUDiMuaog1oeBu_NpRPiKmr0,387
13
+ sqlite_graph_memory-0.3.2.dist-info/licenses/LICENSE,sha256=p88nZdrfMUiES3_MpUEwhGmqz2hQFpyMh0k0cqdpfU8,1082
14
+ sqlite_graph_memory-0.3.2.dist-info/RECORD,,
@@ -2,5 +2,7 @@
2
2
  sgm-ask = sqlite_graph_memory.brain_ask:main
3
3
  sgm-index = sqlite_graph_memory.index_notes:main
4
4
  sgm-mcp = sqlite_graph_memory.mcp_server:main
5
+ sgm-stats = sqlite_graph_memory.vault_stats:main
5
6
  sgm-turnstate-hook = sqlite_graph_memory.turnstate_hook:main
6
7
  sgm-turnstate-show = sqlite_graph_memory.turnstate_show:main
8
+ sqlite-graph-memory = sqlite_graph_memory.mcp_server:main
@@ -1,12 +0,0 @@
1
- sqlite_graph_memory/__init__.py,sha256=T5govp5VGbquVPCrt9A206zFxMoSc9cyVZiP-1sMBcM,1151
2
- sqlite_graph_memory/brain_ask.py,sha256=IU8AVk8VvDJr0XC02a7Foil_f0ui0N-Rr_jD734Onbk,14104
3
- sqlite_graph_memory/index_notes.py,sha256=Hmt0_VVJHS-zXhPPw9h2te8iG1W48f1tJ_H0ALt9aLk,5333
4
- sqlite_graph_memory/mcp_server.py,sha256=ncswz2La4JICUmvYhiOM5x9KipxbK7PXjxIyepKtgns,8771
5
- sqlite_graph_memory/schema.sql,sha256=8aySXKw3Azaxyzqbd76mKTfOaDP7FlpkLXtgwA8ZVK4,2543
6
- sqlite_graph_memory/turnstate_hook.py,sha256=fypGmUcHQkzlRN74tvIG07lr9uAXpp2GjetqthkuMc8,8641
7
- sqlite_graph_memory/turnstate_show.py,sha256=IED7fmJQM5VgBNwxmEoNSZtujRmWja-qVPg5ckbWVnY,2909
8
- sqlite_graph_memory-0.3.0.dist-info/METADATA,sha256=Ac_rhb4QZJz0bbKR2XqErNIKX2IiV3BDP9ilCBlSWzI,27081
9
- sqlite_graph_memory-0.3.0.dist-info/WHEEL,sha256=W3fkpkm7-wf9vBI5Z-7s0eWkeM-spu78I8Neb98DeEg,87
10
- sqlite_graph_memory-0.3.0.dist-info/entry_points.txt,sha256=dyQ1KGmf1xgBfDKb3m_2GTXpF4IR4SDGm53oBNZy-CI,280
11
- sqlite_graph_memory-0.3.0.dist-info/licenses/LICENSE,sha256=p88nZdrfMUiES3_MpUEwhGmqz2hQFpyMh0k0cqdpfU8,1082
12
- sqlite_graph_memory-0.3.0.dist-info/RECORD,,