spacr 0.9.23__py3-none-any.whl → 0.9.25__py3-none-any.whl

spacr/gui_core.py

@@ -361,8 +361,8 @@ def setup_plot_section(vertical_container, settings_type):
     if settings_type == 'map_barcodes':
         current_dir = os.path.dirname(__file__)
         resources_path = os.path.join(current_dir, 'resources', 'icons')
-        gif_path = os.path.join(resources_path, 'dna_matrix.mp4')
-        display_media_in_plot_frame(gif_path, plot_frame)
+        #gif_path = os.path.join(resources_path, 'dna_matrix.mp4')
+        #display_media_in_plot_frame(gif_path, plot_frame)
 
         canvas = FigureCanvasTkAgg(figure, master=plot_frame)
         canvas.get_tk_widget().configure(cursor='arrow', highlightthickness=0)

{spacr-0.9.23.dist-info → spacr-0.9.25.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: spacr
-Version: 0.9.23
+Version: 0.9.25
 Summary: Spatial phenotype analysis of crisp screens (SpaCr)
 Home-page: https://github.com/EinarOlafsson/spacr
 Author: Einar Birnir Olafsson
@@ -118,7 +118,7 @@ Features
 -  **Sequencing:** Map FASTQ reads to barcode and gRNA barcode metadata.
 -  **Misc:** Analyze Ca oscillation, recruitment, infection rate, plaque size/count.
 
-.. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v2.png
+.. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v3.png
    :alt: SpaCr workflow
    :align: center
 
@@ -167,7 +167,7 @@ Data Availability
 
 - **Raw sequencing data** are available from NCBI BioProject `PRJNA1261935 <https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1261935>`_ and SRA accessions: `SRR33531217 <https://www.ncbi.nlm.nih.gov/sra/SRR33531217>`_, `SRR33531218 <https://www.ncbi.nlm.nih.gov/sra/SRR33531218>`_, `SRR33531219 <https://www.ncbi.nlm.nih.gov/sra/SRR33531219>`_, `SRR33531220 <https://www.ncbi.nlm.nih.gov/sra/SRR33531220>`_
 
-- **Image data** is deposited at EBI BioStudies under accession: `S-BIAD2076 <https://www.ebi.ac.uk/biostudies/studies/S-BIAD2076>`_
+- **Image data** is deposited at EBI BioStudies under accession: `S-BIAD2076 <https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD2076>`_
 
 Example Notebooks
 -----------------
@@ -200,5 +200,5 @@ See the `LICENSE <https://github.com/EinarOlafsson/spacr/blob/main/LICENSE>`_ fi
 How to Cite
 -----------
 If you use spaCR in your research, please cite:  
-Einar Olafsson, et al. SpaCr: Spatial phenotype analysis of CRISPR-Cas9 screens. *Manuscript in preparation*.
+Olafsson EB, et al. SpaCr: Spatial phenotype analysis of CRISPR-Cas9 screens. *Manuscript in preparation*.
 

{spacr-0.9.23.dist-info → spacr-0.9.25.dist-info}/RECORD

@@ -11,7 +11,7 @@ spacr/chat_bot.py,sha256=n3Fhqg3qofVXHmh3H9sUcmfYy9MmgRnr48663MVdY9E,1244
 spacr/core.py,sha256=w4E3Pg-ZnA8BOK0iUMTjiNO0GeR5YCEs8fUTbESzqjY,47392
 spacr/deep_spacr.py,sha256=055tIo3WP3elGFiIuSZaLURgu2XyUDxAdbw5ezASEqM,54526
 spacr/gui.py,sha256=NhMh96KoArrSAaJBV6PhDQpIC1cQpxgb6SclhRbYG8s,8122
-spacr/gui_core.py,sha256=m-AYUmaSXqsGFj9EzPf4fp1irZGN-X-21S4FBO8PoXc,52727
+spacr/gui_core.py,sha256=RtpdB8S8yF9WARRsUjrZ1szZi4ZMfG7R_W34BTBEGYo,52729
 spacr/gui_elements.py,sha256=5a3BOpctBPklsT1NungqS72h1Bg1FArUndE0OfvWD8Y,152646
 spacr/gui_utils.py,sha256=vv_uBOA0n-04KCCicYHhNt3sRbm0IPLM5r8QX5EkJ1Q,40867
 spacr/io.py,sha256=SYLhupKnOJJscNSGE4N67E32-ywhwrjRccIfZrL38Uk,157966
@@ -83,6 +83,7 @@ spacr/resources/icons/default.png,sha256=KoNhaSHukO4wDyivyYEgSbb5mGj-sAxmhKikLLt
 spacr/resources/icons/dna_matrix.mp4,sha256=NegOQkn4q4kHhFgqcIX2dd58wVytBtnkmbgg0ZegL8U,23462876
 spacr/resources/icons/download.png,sha256=1nUoWRaTc4vIsK6gompdeqk0cIv2GdH-gCNHaEBX6Mc,20467
 spacr/resources/icons/flow_chart_v2.png,sha256=4U4uzJlyQ8L-exWIXIhyqtkoO-KIiubO23kA7eLZYYE,640609
+spacr/resources/icons/flow_chart_v3.png,sha256=Vw7ykdgmXEpA5BLUpDEnp_bAaJ6gPz94EVYqMHXmn1k,638047
 spacr/resources/icons/logo.pdf,sha256=VB4cS41V3VV_QxD7l6CwdQKQiYLErugLBxWoCoxjQU0,377925
 spacr/resources/icons/logo_spacr.png,sha256=qG3e3bdrAefhl1281rfo0R2XP0qA-c-oaBCXjxMGXkw,42587
 spacr/resources/icons/logo_spacr_1.png,sha256=g9y2ZmnV3hab8r1idDfytm8AaHbBiQdu_93Jd7YKzwA,610892
@@ -102,9 +103,9 @@ spacr/resources/icons/umap.png,sha256=dOLF3DeLYy9k0nkUybiZMe1wzHQwLJFRmgccppw-8b
 spacr/resources/images/plate1_E01_T0001F001L01A01Z01C02.tif,sha256=Tl0ZUfZ_AYAbu0up_nO0tPRtF1BxXhWQ3T3pURBCCRo,7958528
 spacr/resources/images/plate1_E01_T0001F001L01A02Z01C01.tif,sha256=m8N-V71rA1TT4dFlENNg8s0Q0YEXXs8slIn7yObmZJQ,7958528
 spacr/resources/images/plate1_E01_T0001F001L01A03Z01C03.tif,sha256=Pbhk7xn-KUP6RSIhJsxQcrHFImBm3GEpLkzx7WOc-5M,7958528
-spacr-0.9.23.dist-info/LICENSE,sha256=t0Pov6pnK8thLteoF4xZGmdCwe5mhNwl3OXxLYTGD9U,1081
-spacr-0.9.23.dist-info/METADATA,sha256=gy9qyJkjFqHadibbOyT-P5LpuddwA67xwvGHLBmXOK0,9981
-spacr-0.9.23.dist-info/WHEEL,sha256=R0nc6qTxuoLk7ShA2_Y-UWkN8ZdfDBG2B6Eqpz2WXbs,91
-spacr-0.9.23.dist-info/entry_points.txt,sha256=BMC0ql9aNNpv8lUZ8sgDLQMsqaVnX5L535gEhKUP5ho,296
-spacr-0.9.23.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
-spacr-0.9.23.dist-info/RECORD,,
+spacr-0.9.25.dist-info/LICENSE,sha256=t0Pov6pnK8thLteoF4xZGmdCwe5mhNwl3OXxLYTGD9U,1081
+spacr-0.9.25.dist-info/METADATA,sha256=x5pSFgTi8NS3rL8YvAERr4XRNhVJb1nAeK-lvxXBBHQ,9988
+spacr-0.9.25.dist-info/WHEEL,sha256=R0nc6qTxuoLk7ShA2_Y-UWkN8ZdfDBG2B6Eqpz2WXbs,91
+spacr-0.9.25.dist-info/entry_points.txt,sha256=BMC0ql9aNNpv8lUZ8sgDLQMsqaVnX5L535gEhKUP5ho,296
+spacr-0.9.25.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
+spacr-0.9.25.dist-info/RECORD,,