spacr 0.2.65__py3-none-any.whl → 0.2.66__py3-none-any.whl

spacr/__init__.py

@@ -51,13 +51,5 @@ __all__ = [
     "logger"
 ]
 
-# Check for CUDA GPU availability
-if torch.cuda.is_available():
-    from . import graph_learning
-    __all__.append("graph_learning")
-    logging.info("CUDA GPU detected. Graph learning module loaded.")
-else:
-    logging.info("No CUDA GPU detected. Graph learning module not loaded.")
-
 logging.basicConfig(filename='spacr.log', level=logging.INFO,
                     format='%(asctime)s:%(levelname)s:%(message)s')

spacr/gui.py

@@ -7,6 +7,15 @@ from .gui_core import initiate_root
 class MainApp(tk.Tk):
     def __init__(self, default_app=None):
         super().__init__()
+
+        # Initialize the window
+        self.geometry("100x100")
+        self.update_idletasks()
+
+        # Expand the window to fullscreen
+        self.attributes('-fullscreen', True)
+        self.update_idletasks()
+
         width = self.winfo_screenwidth()
         height = self.winfo_screenheight()
         self.geometry(f"{width}x{height}")

spacr/utils.py

@@ -1,4 +1,4 @@
-import sys, os, re, sqlite3, torch, torchvision, random, string, shutil, cv2, tarfile, glob, psutil, platform, gzip
+import sys, os, re, sqlite3, torch, torchvision, random, string, shutil, cv2, tarfile, glob, psutil, platform, gzip, subprocess
 
 import numpy as np
 from cellpose import models as cp_models
@@ -4433,3 +4433,13 @@ def count_reads_in_fastq(fastq_file):
         for _ in f:
             count += 1
     return count // 4
+
+
+# Function to determine the CUDA version
+def get_cuda_version():
+    try:
+        output = subprocess.check_output(['nvcc', '--version'], stderr=subprocess.STDOUT).decode('utf-8')
+        if 'release' in output:
+            return output.split('release ')[1].split(',')[0].replace('.', '')
+    except (subprocess.CalledProcessError, FileNotFoundError):
+        return None

{spacr-0.2.65.dist-info → spacr-0.2.66.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: spacr
-Version: 0.2.65
+Version: 0.2.66
 Summary: Spatial phenotype analysis of crisp screens (SpaCr)
 Home-page: https://github.com/EinarOlafsson/spacr
 Author: Einar Birnir Olafsson
@@ -9,49 +9,51 @@ Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 License-File: LICENSE
-Requires-Dist: torch <3.0,>=2.0
-Requires-Dist: torchvision <1.0,>=0.1
-Requires-Dist: torch-geometric <3.0,>=2.5
-Requires-Dist: numpy <2.0,>=1.26.4
-Requires-Dist: pandas <3.0,>=2.2.1
-Requires-Dist: statsmodels <1.0,>=0.14.1
-Requires-Dist: scikit-image <1.0,>=0.22.0
-Requires-Dist: scikit-learn <2.0,>=1.4.1
-Requires-Dist: seaborn <1.0,>=0.13.2
-Requires-Dist: matplotlib <4.0,>=3.8.3
-Requires-Dist: shap <1.0,>=0.45.0
-Requires-Dist: pillow <11.0,>=10.2.0
-Requires-Dist: imageio <3.0,>=2.34.0
-Requires-Dist: scipy <2.0,>=1.12.0
-Requires-Dist: ipywidgets <9.0,>=8.1.2
-Requires-Dist: mahotas <2.0,>=1.4.13
-Requires-Dist: btrack <1.0,>=0.6.5
-Requires-Dist: trackpy <1.0,>=0.6.2
-Requires-Dist: cellpose <4.0,>=3.0.6
-Requires-Dist: IPython <9.0,>=8.18.1
-Requires-Dist: opencv-python-headless <5.0,>=4.9.0.80
-Requires-Dist: umap-learn <1.0,>=0.5.6
-Requires-Dist: ttkthemes <4.0,>=3.2.2
-Requires-Dist: xgboost <3.0,>=2.0.3
-Requires-Dist: PyWavelets <2.0,>=1.6.0
-Requires-Dist: torchcam <1.0,>=0.4.0
-Requires-Dist: ttf-opensans >=2020.10.30
-Requires-Dist: customtkinter <6.0,>=5.2.2
-Requires-Dist: biopython <2.0,>=1.80
-Requires-Dist: lxml <6.0,>=5.1.0
-Requires-Dist: psutil <6.0,>=5.9.8
-Requires-Dist: gputil <2.0,>=1.4.0
-Requires-Dist: gpustat <2.0,>=1.1.1
-Requires-Dist: pyautogui <1.0,>=0.9.54
-Requires-Dist: tables <4.0,>=3.8.0
-Requires-Dist: rapidfuzz <4.0,>=3.9
-Requires-Dist: huggingface-hub <0.25,>=0.24.0
+Requires-Dist: torch<3.0,>=2.0
+Requires-Dist: torchvision<1.0,>=0.1
+Requires-Dist: torch-geometric<3.0,>=2.5
+Requires-Dist: numpy<2.0,>=1.26.4
+Requires-Dist: pandas<3.0,>=2.2.1
+Requires-Dist: bottleneck<2.0,>=1.3.6
+Requires-Dist: numexpr<3.0,>=2.8.4
+Requires-Dist: statsmodels<1.0,>=0.14.1
+Requires-Dist: scikit-image<1.0,>=0.22.0
+Requires-Dist: scikit-learn<2.0,>=1.4.1
+Requires-Dist: seaborn<1.0,>=0.13.2
+Requires-Dist: matplotlib<4.0,>=3.8.3
+Requires-Dist: shap<1.0,>=0.45.0
+Requires-Dist: pillow<11.0,>=10.2.0
+Requires-Dist: imageio<3.0,>=2.34.0
+Requires-Dist: scipy<2.0,>=1.12.0
+Requires-Dist: ipywidgets<9.0,>=8.1.2
+Requires-Dist: mahotas<2.0,>=1.4.13
+Requires-Dist: btrack<1.0,>=0.6.5
+Requires-Dist: trackpy<1.0,>=0.6.2
+Requires-Dist: cellpose<4.0,>=3.0.6
+Requires-Dist: IPython<9.0,>=8.18.1
+Requires-Dist: opencv-python-headless<5.0,>=4.9.0.80
+Requires-Dist: umap-learn<1.0,>=0.5.6
+Requires-Dist: ttkthemes<4.0,>=3.2.2
+Requires-Dist: xgboost<3.0,>=2.0.3
+Requires-Dist: PyWavelets<2.0,>=1.6.0
+Requires-Dist: torchcam<1.0,>=0.4.0
+Requires-Dist: ttf-opensans>=2020.10.30
+Requires-Dist: customtkinter<6.0,>=5.2.2
+Requires-Dist: biopython<2.0,>=1.80
+Requires-Dist: lxml<6.0,>=5.1.0
+Requires-Dist: psutil<6.0,>=5.9.8
+Requires-Dist: gputil<2.0,>=1.4.0
+Requires-Dist: gpustat<2.0,>=1.1.1
+Requires-Dist: pyautogui<1.0,>=0.9.54
+Requires-Dist: tables<4.0,>=3.8.0
+Requires-Dist: rapidfuzz<4.0,>=3.9
+Requires-Dist: huggingface-hub<0.25,>=0.24.0
 Provides-Extra: dev
-Requires-Dist: pytest <3.11,>=3.9 ; extra == 'dev'
+Requires-Dist: pytest<3.11,>=3.9; extra == "dev"
 Provides-Extra: full
-Requires-Dist: opencv-python ; extra == 'full'
+Requires-Dist: opencv-python; extra == "full"
 Provides-Extra: headless
-Requires-Dist: opencv-python-headless ; extra == 'headless'
+Requires-Dist: opencv-python-headless; extra == "headless"
 
 .. |Documentation Status| image:: https://readthedocs.org/projects/spacr/badge/?version=latest
    :target: https://spacr.readthedocs.io/en/latest/?badge=latest

{spacr-0.2.65.dist-info → spacr-0.2.66.dist-info}/RECORD

@@ -1,4 +1,4 @@
-spacr/__init__.py,sha256=2MqbX2rPedvIqUyAvI5vJ_YGiDeFDF3VU7xSj7TgF5w,1435
+spacr/__init__.py,sha256=8NZIlJOY2OzRCFjXvqusFL7BfyEJwNqB2lL8QNB-Kgo,1141
 spacr/__main__.py,sha256=bkAJJD2kjIqOP-u1kLvct9jQQCeUXzlEjdgitwi1Lm8,75
 spacr/app_annotate.py,sha256=nEIL7Fle9CDKGo3sucG_03DgjUQt5W1M1IHBIpVBr08,2171
 spacr/app_classify.py,sha256=urTP_wlZ58hSyM5a19slYlBxN0PdC-9-ga0hvq8CGWc,165
@@ -11,7 +11,7 @@ spacr/chris.py,sha256=YlBjSgeZaY8HPy6jkrT_ISAnCMAKVfvCxF0I9eAZLFM,2418
 spacr/core.py,sha256=IDme9j7eeC_49KGaNk_xPOKtpxdcXKMhYtoo3xhjQMM,146502
 spacr/deep_spacr.py,sha256=a2YewgkQvLV-95NYJAutnojvJmX4S8z_wv6Tb-XIgUI,34484
 spacr/graph_learning.py,sha256=1tR-ZxvXE3dBz1Saw7BeVFcrsUFu9OlUZeZVifih9eo,13070
-spacr/gui.py,sha256=dSEQhzZgIOT7SOonbIp07-zXcLaEt6M7sRiIREpDv64,7226
+spacr/gui.py,sha256=q8SBFiMeU6Sy3orpzHdsFxvURr5zv-S-9DOD3TEQ6ag,7445
 spacr/gui_core.py,sha256=HXeMfvthY_G371o84Dcr59VLT6AOKQF8r_V9kVzg7h0,38745
 spacr/gui_elements.py,sha256=7YLyIeK5JFqzevzEruvfQOrfDGOS9ZgD8ZE-dxywp3g,122706
 spacr/gui_utils.py,sha256=1pZ9QAh6BCVb6BSXciU0V9qFWOSsTtCiC72iGXUdV0c,29941
@@ -24,7 +24,7 @@ spacr/settings.py,sha256=tDvTBWANeuI6YC_fH5vK2HOOuRgQXIkzyNKDmt1vL4c,67745
 spacr/sim.py,sha256=FveaVgBi3eypO2oVB5Dx-v0CC1Ny7UPfXkJiiRRodAk,71212
 spacr/sim_app.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 spacr/timelapse.py,sha256=KMYCgHzf9LTZe-lWl5mvH2EjbKRE6OhpwdY13wEumGc,39504
-spacr/utils.py,sha256=5Njrrdhd37Tq09W1cm32941AHmlKrAZiODJGUfOwdCQ,188733
+spacr/utils.py,sha256=R8PA8MyldBKQOvITo9f4oVFcKOMKv5gaD9T86T_LrEA,189120
 spacr/version.py,sha256=axH5tnGwtgSnJHb5IDhiu4Zjk5GhLyAEDRe-rnaoFOA,409
 spacr/resources/font/open_sans/OFL.txt,sha256=bGMoWBRrE2RcdzDiuYiB8A9OVFlJ0sA2imWwce2DAdo,4484
 "spacr/resources/font/open_sans/OpenSans-Italic-VariableFont_wdth,wght.ttf",sha256=QSoWv9h46CRX_fdlqFM3O2d3-PF3R1srnb4zUezcLm0,580280
@@ -92,9 +92,9 @@ spacr/resources/icons/umap.png,sha256=dOLF3DeLYy9k0nkUybiZMe1wzHQwLJFRmgccppw-8b
 spacr/resources/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model,sha256=z8BbHWZPRnE9D_BHO0fBREE85c1vkltDs-incs2ytXQ,26566572
 spacr/resources/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv,sha256=fBAGuL_B8ERVdVizO3BHozTDSbZUh1yFzsYK3wkQN68,420
 spacr/resources/models/cp/toxo_pv_lumen.CP_model,sha256=2y_CindYhmTvVwBH39SNILF3rI3x9SsRn6qrMxHy3l0,26562451
-spacr-0.2.65.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
-spacr-0.2.65.dist-info/METADATA,sha256=M3kT-VwVosUDjXQ9wd6Pux639rG28yhsjVF9eOdx4OI,5259
-spacr-0.2.65.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-spacr-0.2.65.dist-info/entry_points.txt,sha256=BMC0ql9aNNpv8lUZ8sgDLQMsqaVnX5L535gEhKUP5ho,296
-spacr-0.2.65.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
-spacr-0.2.65.dist-info/RECORD,,
+spacr-0.2.66.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
+spacr-0.2.66.dist-info/METADATA,sha256=OFvnPazh5gN1lwOQNMGCca5fdhXteebOX26LnhaLui0,5291
+spacr-0.2.66.dist-info/WHEEL,sha256=HiCZjzuy6Dw0hdX5R3LCFPDmFS4BWl8H-8W39XfmgX4,91
+spacr-0.2.66.dist-info/entry_points.txt,sha256=BMC0ql9aNNpv8lUZ8sgDLQMsqaVnX5L535gEhKUP5ho,296
+spacr-0.2.66.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
+spacr-0.2.66.dist-info/RECORD,,

{spacr-0.2.65.dist-info → spacr-0.2.66.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: setuptools (72.2.0)
 Root-Is-Purelib: true
 Tag: py3-none-any