spacr 0.2.4__py3-none-any.whl → 0.2.8__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (63) hide show
  1. spacr/__init__.py +1 -11
  2. spacr/core.py +277 -349
  3. spacr/deep_spacr.py +248 -269
  4. spacr/gui.py +58 -54
  5. spacr/gui_core.py +689 -535
  6. spacr/gui_elements.py +1002 -153
  7. spacr/gui_utils.py +452 -107
  8. spacr/io.py +158 -91
  9. spacr/measure.py +199 -151
  10. spacr/plot.py +159 -47
  11. spacr/resources/font/open_sans/OFL.txt +93 -0
  12. spacr/resources/font/open_sans/OpenSans-Italic-VariableFont_wdth,wght.ttf +0 -0
  13. spacr/resources/font/open_sans/OpenSans-VariableFont_wdth,wght.ttf +0 -0
  14. spacr/resources/font/open_sans/README.txt +100 -0
  15. spacr/resources/font/open_sans/static/OpenSans-Bold.ttf +0 -0
  16. spacr/resources/font/open_sans/static/OpenSans-BoldItalic.ttf +0 -0
  17. spacr/resources/font/open_sans/static/OpenSans-ExtraBold.ttf +0 -0
  18. spacr/resources/font/open_sans/static/OpenSans-ExtraBoldItalic.ttf +0 -0
  19. spacr/resources/font/open_sans/static/OpenSans-Italic.ttf +0 -0
  20. spacr/resources/font/open_sans/static/OpenSans-Light.ttf +0 -0
  21. spacr/resources/font/open_sans/static/OpenSans-LightItalic.ttf +0 -0
  22. spacr/resources/font/open_sans/static/OpenSans-Medium.ttf +0 -0
  23. spacr/resources/font/open_sans/static/OpenSans-MediumItalic.ttf +0 -0
  24. spacr/resources/font/open_sans/static/OpenSans-Regular.ttf +0 -0
  25. spacr/resources/font/open_sans/static/OpenSans-SemiBold.ttf +0 -0
  26. spacr/resources/font/open_sans/static/OpenSans-SemiBoldItalic.ttf +0 -0
  27. spacr/resources/font/open_sans/static/OpenSans_Condensed-Bold.ttf +0 -0
  28. spacr/resources/font/open_sans/static/OpenSans_Condensed-BoldItalic.ttf +0 -0
  29. spacr/resources/font/open_sans/static/OpenSans_Condensed-ExtraBold.ttf +0 -0
  30. spacr/resources/font/open_sans/static/OpenSans_Condensed-ExtraBoldItalic.ttf +0 -0
  31. spacr/resources/font/open_sans/static/OpenSans_Condensed-Italic.ttf +0 -0
  32. spacr/resources/font/open_sans/static/OpenSans_Condensed-Light.ttf +0 -0
  33. spacr/resources/font/open_sans/static/OpenSans_Condensed-LightItalic.ttf +0 -0
  34. spacr/resources/font/open_sans/static/OpenSans_Condensed-Medium.ttf +0 -0
  35. spacr/resources/font/open_sans/static/OpenSans_Condensed-MediumItalic.ttf +0 -0
  36. spacr/resources/font/open_sans/static/OpenSans_Condensed-Regular.ttf +0 -0
  37. spacr/resources/font/open_sans/static/OpenSans_Condensed-SemiBold.ttf +0 -0
  38. spacr/resources/font/open_sans/static/OpenSans_Condensed-SemiBoldItalic.ttf +0 -0
  39. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Bold.ttf +0 -0
  40. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-BoldItalic.ttf +0 -0
  41. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-ExtraBold.ttf +0 -0
  42. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-ExtraBoldItalic.ttf +0 -0
  43. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Italic.ttf +0 -0
  44. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Light.ttf +0 -0
  45. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-LightItalic.ttf +0 -0
  46. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Medium.ttf +0 -0
  47. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-MediumItalic.ttf +0 -0
  48. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Regular.ttf +0 -0
  49. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-SemiBold.ttf +0 -0
  50. spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-SemiBoldItalic.ttf +0 -0
  51. spacr/resources/icons/logo.pdf +2786 -6
  52. spacr/resources/icons/logo_spacr.png +0 -0
  53. spacr/resources/icons/logo_spacr_1.png +0 -0
  54. spacr/sequencing.py +477 -587
  55. spacr/settings.py +217 -144
  56. spacr/utils.py +46 -46
  57. {spacr-0.2.4.dist-info → spacr-0.2.8.dist-info}/METADATA +46 -35
  58. spacr-0.2.8.dist-info/RECORD +100 -0
  59. {spacr-0.2.4.dist-info → spacr-0.2.8.dist-info}/WHEEL +1 -1
  60. spacr-0.2.4.dist-info/RECORD +0 -58
  61. {spacr-0.2.4.dist-info → spacr-0.2.8.dist-info}/LICENSE +0 -0
  62. {spacr-0.2.4.dist-info → spacr-0.2.8.dist-info}/entry_points.txt +0 -0
  63. {spacr-0.2.4.dist-info → spacr-0.2.8.dist-info}/top_level.txt +0 -0
spacr/__init__.py CHANGED
@@ -17,7 +17,6 @@ from . import gui_utils
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  from . import gui_elements
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  from . import gui_core
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  from . import gui
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- from . import gui
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  from . import app_make_masks
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  from . import app_mask
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  from . import app_measure
@@ -35,7 +34,7 @@ __all__ = [
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  "plot",
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  "measure",
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  "sim",
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- "sequencing"
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+ "sequencing",
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  "timelapse",
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  "deep_spacr",
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  "app_annotate",
@@ -43,7 +42,6 @@ __all__ = [
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  "gui_elements",
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  "gui_core",
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  "gui",
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- "gui",
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  "app_make_masks",
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  "app_mask",
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  "app_measure",
@@ -53,13 +51,5 @@ __all__ = [
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  "logger"
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  ]
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- # Check for CUDA GPU availability
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- if torch.cuda.is_available():
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- from . import graph_learning
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- __all__.append("graph_learning")
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- logging.info("CUDA GPU detected. Graph learning module loaded.")
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- else:
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- logging.info("No CUDA GPU detected. Graph learning module not loaded.")
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-
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  logging.basicConfig(filename='spacr.log', level=logging.INFO,
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  format='%(asctime)s:%(levelname)s:%(message)s')