spacr 0.2.2__py3-none-any.whl → 0.2.4__py3-none-any.whl

spacr/utils.py

@@ -87,6 +87,61 @@ from scipy.stats import f_oneway, kruskal
 from sklearn.cluster import KMeans
 from scipy import stats
 
+def print_progress_v1(files_processed, files_to_process, n_jobs, time_ls=None, batch_size=None, operation_type=""):
+    if isinstance(files_processed, list):
+        files_processed = len(files_processed)
+    if isinstance(files_to_process, list):
+        files_to_process = len(files_to_process)
+    if isinstance(batch_size, list):
+        batch_size = len(batch_size)
+
+    if time_ls is not None:
+        average_time = np.mean(time_ls) if len(time_ls) > 0 else 0
+        time_left = (((files_to_process-files_processed)*average_time)/n_jobs)/60
+        if batch_size is None:
+            print(f'Time/image: {average_time:.3f}sec')
+            print(f'Time_left: {time_left:.3f} min.')
+        else:
+            average_time_img = average_time/batch_size
+            print(f'Time/batch:{average_time:.3f}sec')
+            print(f'Time/image {average_time_img:.3f}')
+            print(f'Time_left: {time_left:.3f} min.')
+            
+    print(f'Progress: {files_processed}/{files_to_process}, operation_type: {operation_type}')
+
+def print_progress(files_processed, files_to_process, n_jobs, time_ls=None, batch_size=None, operation_type=""):
+    if isinstance(files_processed, list):
+        files_processed = len(files_processed)
+    if isinstance(files_to_process, list):
+        files_to_process = len(files_to_process)
+    if isinstance(batch_size, list):
+        batch_size = len(batch_size)
+
+    if not isinstance(files_processed, int):
+        try:
+            files_processed = int(files_processed)
+        except:
+            files_processed = 0
+    if not isinstance(files_to_process, int):
+        try:
+            files_to_process = int(files_to_process)
+        except:
+            files_to_process = 0
+
+    time_info = ""
+    if time_ls is not None:
+        average_time = np.mean(time_ls) if len(time_ls) > 0 else 0
+        time_left = (((files_to_process - files_processed) * average_time) / n_jobs) / 60
+        if batch_size is None:
+            time_info = f'Time/image: {average_time:.3f}sec, Time_left: {time_left:.3f} min.'
+        else:
+            average_time_img = average_time / batch_size
+            time_info = f'Time/batch: {average_time:.3f}sec, Time/image: {average_time_img:.3f}sec, Time_left: {time_left:.3f} min.'
+
+    print(f'Progress: {files_processed}/{files_to_process}, operation_type: {operation_type} {time_info}')
+
+
+
 def reset_mp():
     current_method = get_start_method()
     system = platform.system()

{spacr-0.2.2.dist-info → spacr-0.2.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: spacr
-Version: 0.2.2
+Version: 0.2.4
 Summary: Spatial phenotype analysis of crisp screens (SpaCr)
 Home-page: https://github.com/EinarOlafsson/spacr
 Author: Einar Birnir Olafsson

spacr-0.2.4.dist-info/RECORD

@@ -0,0 +1,58 @@
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+spacr/__main__.py,sha256=bkAJJD2kjIqOP-u1kLvct9jQQCeUXzlEjdgitwi1Lm8,75
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+spacr/app_classify.py,sha256=urTP_wlZ58hSyM5a19slYlBxN0PdC-9-ga0hvq8CGWc,165
+spacr/app_make_masks.py,sha256=pqDhRpluiHZz-kPX2Zh_KbYe4TsU43qYBa_7f-rsjpw,1694
+spacr/app_mask.py,sha256=l-dBY8ftzCMdDe6-pXc2Nh_u-idNL9G7UOARiLJBtds,153
+spacr/app_measure.py,sha256=_K7APYIeOKpV6e_LcqabBjvEi7mfq9Fch8175x1x0k8,162
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+spacr/app_umap.py,sha256=ZWAmf_OsIKbYvolYuWPMYhdlVe-n2CADoJulAizMiEo,153
+spacr/chris.py,sha256=YlBjSgeZaY8HPy6jkrT_ISAnCMAKVfvCxF0I9eAZLFM,2418
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+spacr/deep_spacr.py,sha256=ASBsN4JpHp_3S-91JUsB34IWTjTGPYI7jKV2qZnUR5M,37005
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+spacr/gui_utils.py,sha256=ySSDDYmY80h_Wk2Nb1oxbugRU2TWt6N7BwusUl_-wRo,14970
+spacr/io.py,sha256=Dehuqn_oGo0gcyezQIw9rUUvO7oOHDWuMkPDSCgyrp8,115521
+spacr/logger.py,sha256=7Zqr3TuuOQLWT32gYr2q1qvv7x0a2JhLANmZcnBXAW8,670
+spacr/measure.py,sha256=W5_yuLnsFSafuZNcKzVsCTJSTfpbNgrGTuxG1OVb0iU,55283
+spacr/plot.py,sha256=DYJEoK1kz2ih6ZGvKiA3xTqeIeKQNhuQKwgrscopFxA,69101
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+spacr/sim_app.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+spacr/timelapse.py,sha256=KMYCgHzf9LTZe-lWl5mvH2EjbKRE6OhpwdY13wEumGc,39504
+spacr/utils.py,sha256=r23Cd94HT3q1kMIbyEmyvJVnnDOY16plvUXVwxuX1PE,189256
+spacr/version.py,sha256=axH5tnGwtgSnJHb5IDhiu4Zjk5GhLyAEDRe-rnaoFOA,409
+spacr/resources/icons/abort.png,sha256=avtIRT7aCJsdZ1WnY_rZStm6cCji5bYPLnlptdcTNcM,6583
+spacr/resources/icons/annotate.png,sha256=GFgh7DiUMwPG_-xE6W1qU8V_qzSwBi1xKenfoaQxeFA,15495
+spacr/resources/icons/cellpose_all.png,sha256=HVWOIOBF8p3-On-2UahwMyQXp7awsoC5yWExU1ahDag,20271
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+spacr/resources/icons/classify.png,sha256=-iv4sqAwUVJO3CG6fHKHf3_BB0s-I2i4prg-iR7dSBM,35897
+spacr/resources/icons/default.png,sha256=KoNhaSHukO4wDyivyYEgSbb5mGj-sAxmhKikLLtNpWs,20341
+spacr/resources/icons/download.png,sha256=1nUoWRaTc4vIsK6gompdeqk0cIv2GdH-gCNHaEBX6Mc,20467
+spacr/resources/icons/logo_spacr.png,sha256=g9y2ZmnV3hab8r1idDfytm8AaHbBiQdu_93Jd7YKzwA,610892
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+spacr/resources/icons/map_barcodes.png,sha256=ED6yCopk3hP7tICSvT8U_qA1bOOb0WHqmxVkmRxnbtE,7896
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+spacr/resources/icons/ml_analyze.png,sha256=Wc9a_LpG2XffiMfXxn0yUmGP40IXzlAV7bHXQf7m_2o,15754
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+spacr-0.2.4.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
+spacr-0.2.4.dist-info/METADATA,sha256=CK0hbhbcv2TXBF8zRgO8fQRLnWDiEWPn5xmkjtfMSIQ,5049
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