spacr 0.2.1__py3-none-any.whl → 0.2.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (95) hide show
  1. spacr/gui.py +2 -1
  2. spacr/gui_core.py +75 -34
  3. spacr/gui_elements.py +323 -59
  4. spacr/gui_utils.py +26 -32
  5. spacr/resources/icons/abort.png +0 -0
  6. spacr/resources/icons/classify.png +0 -0
  7. spacr/resources/icons/make_masks.png +0 -0
  8. spacr/resources/icons/mask.png +0 -0
  9. spacr/resources/icons/measure.png +0 -0
  10. spacr/resources/icons/ml_analyze.png +0 -0
  11. spacr/resources/icons/recruitment.png +0 -0
  12. spacr/resources/icons/regression.png +0 -0
  13. spacr/resources/icons/run.png +0 -0
  14. spacr/resources/icons/spacr_logo_rotation.gif +0 -0
  15. spacr/resources/icons/train_cellpose.png +0 -0
  16. spacr/resources/icons/umap.png +0 -0
  17. {spacr-0.2.1.dist-info → spacr-0.2.3.dist-info}/METADATA +1 -1
  18. spacr-0.2.3.dist-info/RECORD +58 -0
  19. spacr/alpha.py +0 -807
  20. spacr/annotate_app.py +0 -670
  21. spacr/annotate_app_v2.py +0 -670
  22. spacr/app_make_masks_v2.py +0 -686
  23. spacr/classify_app.py +0 -201
  24. spacr/cli.py +0 -41
  25. spacr/foldseek.py +0 -779
  26. spacr/get_alfafold_structures.py +0 -72
  27. spacr/gui_2.py +0 -157
  28. spacr/gui_annotate.py +0 -145
  29. spacr/gui_classify_app.py +0 -201
  30. spacr/gui_make_masks_app.py +0 -927
  31. spacr/gui_make_masks_app_v2.py +0 -688
  32. spacr/gui_mask_app.py +0 -249
  33. spacr/gui_measure_app.py +0 -246
  34. spacr/gui_run.py +0 -58
  35. spacr/gui_sim_app.py +0 -0
  36. spacr/gui_wrappers.py +0 -149
  37. spacr/icons/abort.png +0 -0
  38. spacr/icons/abort.svg +0 -1
  39. spacr/icons/download.png +0 -0
  40. spacr/icons/download.svg +0 -1
  41. spacr/icons/download_for_offline_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.png +0 -0
  42. spacr/icons/download_for_offline_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.svg +0 -1
  43. spacr/icons/logo_spacr.png +0 -0
  44. spacr/icons/make_masks.png +0 -0
  45. spacr/icons/make_masks.svg +0 -1
  46. spacr/icons/map_barcodes.png +0 -0
  47. spacr/icons/map_barcodes.svg +0 -1
  48. spacr/icons/mask.png +0 -0
  49. spacr/icons/mask.svg +0 -1
  50. spacr/icons/measure.png +0 -0
  51. spacr/icons/measure.svg +0 -1
  52. spacr/icons/play_circle_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.png +0 -0
  53. spacr/icons/play_circle_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.svg +0 -1
  54. spacr/icons/run.png +0 -0
  55. spacr/icons/run.svg +0 -1
  56. spacr/icons/sequencing.png +0 -0
  57. spacr/icons/sequencing.svg +0 -1
  58. spacr/icons/settings.png +0 -0
  59. spacr/icons/settings.svg +0 -1
  60. spacr/icons/settings_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.png +0 -0
  61. spacr/icons/settings_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.svg +0 -1
  62. spacr/icons/stop_circle_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.png +0 -0
  63. spacr/icons/stop_circle_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.svg +0 -1
  64. spacr/icons/theater_comedy_100dp_E8EAED_FILL0_wght100_GRAD200_opsz48.png +0 -0
  65. spacr/icons/theater_comedy_100dp_E8EAED_FILL0_wght100_GRAD200_opsz48.svg +0 -1
  66. spacr/make_masks_app.py +0 -929
  67. spacr/make_masks_app_v2.py +0 -688
  68. spacr/mask_app.py +0 -249
  69. spacr/measure_app.py +0 -246
  70. spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model +0 -0
  71. spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv +0 -23
  72. spacr/models/cp/toxo_pv_lumen.CP_model +0 -0
  73. spacr/old_code.py +0 -358
  74. spacr/resources/icons/abort.svg +0 -1
  75. spacr/resources/icons/annotate.svg +0 -1
  76. spacr/resources/icons/classify.svg +0 -1
  77. spacr/resources/icons/download.svg +0 -1
  78. spacr/resources/icons/icon.psd +0 -0
  79. spacr/resources/icons/make_masks.svg +0 -1
  80. spacr/resources/icons/map_barcodes.svg +0 -1
  81. spacr/resources/icons/mask.svg +0 -1
  82. spacr/resources/icons/measure.svg +0 -1
  83. spacr/resources/icons/run.svg +0 -1
  84. spacr/resources/icons/run_2.png +0 -0
  85. spacr/resources/icons/run_2.svg +0 -1
  86. spacr/resources/icons/sequencing.svg +0 -1
  87. spacr/resources/icons/settings.svg +0 -1
  88. spacr/resources/icons/train_cellpose.svg +0 -1
  89. spacr/test_gui.py +0 -0
  90. spacr-0.2.1.dist-info/RECORD +0 -126
  91. /spacr/resources/icons/{cellpose.png → cellpose_all.png} +0 -0
  92. {spacr-0.2.1.dist-info → spacr-0.2.3.dist-info}/LICENSE +0 -0
  93. {spacr-0.2.1.dist-info → spacr-0.2.3.dist-info}/WHEEL +0 -0
  94. {spacr-0.2.1.dist-info → spacr-0.2.3.dist-info}/entry_points.txt +0 -0
  95. {spacr-0.2.1.dist-info → spacr-0.2.3.dist-info}/top_level.txt +0 -0
{spacr-0.2.1.dist-info → spacr-0.2.3.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: spacr
3
- Version: 0.2.1
3
+ Version: 0.2.3
4
4
  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
5
5
  Home-page: https://github.com/EinarOlafsson/spacr
6
6
  Author: Einar Birnir Olafsson
spacr-0.2.3.dist-info/RECORD ADDED
@@ -0,0 +1,58 @@
1
+ spacr/__init__.py,sha256=pJ7Mm7Kb1DhHIdLmNgMILFVWJ9QAG47pT0M6wtiXl8E,1465
2
+ spacr/__main__.py,sha256=bkAJJD2kjIqOP-u1kLvct9jQQCeUXzlEjdgitwi1Lm8,75
3
+ spacr/app_annotate.py,sha256=xA39bsgvrQlY8P22cUC7sAaw4O57tgZawZtsANmY0ek,2302
4
+ spacr/app_classify.py,sha256=urTP_wlZ58hSyM5a19slYlBxN0PdC-9-ga0hvq8CGWc,165
5
+ spacr/app_make_masks.py,sha256=pqDhRpluiHZz-kPX2Zh_KbYe4TsU43qYBa_7f-rsjpw,1694
6
+ spacr/app_mask.py,sha256=l-dBY8ftzCMdDe6-pXc2Nh_u-idNL9G7UOARiLJBtds,153
7
+ spacr/app_measure.py,sha256=_K7APYIeOKpV6e_LcqabBjvEi7mfq9Fch8175x1x0k8,162
8
+ spacr/app_sequencing.py,sha256=DjG26jy4cpddnV8WOOAIiExtOe9MleVMY4MFa5uTo5w,157
9
+ spacr/app_umap.py,sha256=ZWAmf_OsIKbYvolYuWPMYhdlVe-n2CADoJulAizMiEo,153
10
+ spacr/chris.py,sha256=YlBjSgeZaY8HPy6jkrT_ISAnCMAKVfvCxF0I9eAZLFM,2418
11
+ spacr/core.py,sha256=wL6E1MMNrRyvyileqsTOnQ3lhABnw_L6O-4UApZGL84,160216
12
+ spacr/deep_spacr.py,sha256=ASBsN4JpHp_3S-91JUsB34IWTjTGPYI7jKV2qZnUR5M,37005
13
+ spacr/graph_learning.py,sha256=1tR-ZxvXE3dBz1Saw7BeVFcrsUFu9OlUZeZVifih9eo,13070
14
+ spacr/gui.py,sha256=bA1Qy6D9aeL_Qe0Xeql8bRkbbFajAMGTZZR3uBzIW1Q,8495
15
+ spacr/gui_core.py,sha256=x6_LvAED2QUf52mmrx_UQjSZ6PBshO3ra5MA44o43z4,35071
16
+ spacr/gui_elements.py,sha256=NM8fCdp1IPJ2z4WyB1qE44rCEGezt2I0PZ5OcwU8UY8,92183
17
+ spacr/gui_utils.py,sha256=KeIFh3SgOEw1QQ48utm4bVzjUauVZwy5oYrUrD94VWs,13615
18
+ spacr/io.py,sha256=f7cVn48wNUEj6Teky4p3ojoivAdMUmPll2s0MzJkKD0,112068
19
+ spacr/logger.py,sha256=7Zqr3TuuOQLWT32gYr2q1qvv7x0a2JhLANmZcnBXAW8,670
20
+ spacr/measure.py,sha256=RzcD8rsUaOZUYB-zcbaUZcJbrwT0IIW5G7qvb__SO-E,55616
21
+ spacr/plot.py,sha256=DYJEoK1kz2ih6ZGvKiA3xTqeIeKQNhuQKwgrscopFxA,69101
22
+ spacr/sequencing.py,sha256=fHZRnoMSxmhMdadkei3lUeBdckqFyptWdQyWsDW3aaU,83304
23
+ spacr/settings.py,sha256=2fAyGl8lzkkpB3MJJoywo0hCEg9CjziLWkXF0Miv3mM,65569
24
+ spacr/sim.py,sha256=FveaVgBi3eypO2oVB5Dx-v0CC1Ny7UPfXkJiiRRodAk,71212
25
+ spacr/sim_app.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
26
+ spacr/timelapse.py,sha256=KMYCgHzf9LTZe-lWl5mvH2EjbKRE6OhpwdY13wEumGc,39504
27
+ spacr/utils.py,sha256=OQ8sSBH6VWx2xP_vh4ILJT71B46DFFhsq-Y6WxYdGhI,186891
28
+ spacr/version.py,sha256=axH5tnGwtgSnJHb5IDhiu4Zjk5GhLyAEDRe-rnaoFOA,409
29
+ spacr/resources/icons/abort.png,sha256=avtIRT7aCJsdZ1WnY_rZStm6cCji5bYPLnlptdcTNcM,6583
30
+ spacr/resources/icons/annotate.png,sha256=GFgh7DiUMwPG_-xE6W1qU8V_qzSwBi1xKenfoaQxeFA,15495
31
+ spacr/resources/icons/cellpose_all.png,sha256=HVWOIOBF8p3-On-2UahwMyQXp7awsoC5yWExU1ahDag,20271
32
+ spacr/resources/icons/cellpose_masks.png,sha256=HVWOIOBF8p3-On-2UahwMyQXp7awsoC5yWExU1ahDag,20271
33
+ spacr/resources/icons/classify.png,sha256=-iv4sqAwUVJO3CG6fHKHf3_BB0s-I2i4prg-iR7dSBM,35897
34
+ spacr/resources/icons/default.png,sha256=KoNhaSHukO4wDyivyYEgSbb5mGj-sAxmhKikLLtNpWs,20341
35
+ spacr/resources/icons/download.png,sha256=1nUoWRaTc4vIsK6gompdeqk0cIv2GdH-gCNHaEBX6Mc,20467
36
+ spacr/resources/icons/logo_spacr.png,sha256=g9y2ZmnV3hab8r1idDfytm8AaHbBiQdu_93Jd7YKzwA,610892
37
+ spacr/resources/icons/make_masks.png,sha256=iB4kaTgbgyygSJSNstVKhRIXKSgWYkeh7Gt3ox-kWDI,42493
38
+ spacr/resources/icons/map_barcodes.png,sha256=ED6yCopk3hP7tICSvT8U_qA1bOOb0WHqmxVkmRxnbtE,7896
39
+ spacr/resources/icons/mask.png,sha256=DcBes-3UJ7XjRfj_P4RttRp680ZKZeH9a-DSk7bIF5U,37658
40
+ spacr/resources/icons/measure.png,sha256=Gd-dlN-3Z8D_XngJnChNme8D63KEJMFs_cBv7wT2vOY,40938
41
+ spacr/resources/icons/ml_analyze.png,sha256=Wc9a_LpG2XffiMfXxn0yUmGP40IXzlAV7bHXQf7m_2o,15754
42
+ spacr/resources/icons/recruitment.png,sha256=dlVh2ebV_f3rhRFBiL0hDtlUeBSIeg0d4vny8A8IAdo,25067
43
+ spacr/resources/icons/regression.png,sha256=WIrKY4fSojBOCDkHno4Qb-KH7jcHh6G67dOKzczaU1I,42267
44
+ spacr/resources/icons/run.png,sha256=ICzyAvsRBCXNAbdn5N3PxCxxVyqxkfC4zOI5Zc8vbxQ,8974
45
+ spacr/resources/icons/sequencing.png,sha256=P9E_Y76ZysWMKst3_hAw-_4F510XPW1l1TsDElVzt4o,17775
46
+ spacr/resources/icons/settings.png,sha256=y5Ow5BxJDDsrqom0VNbOMDGGUs6odxbSMDy6y4r_F0w,22269
47
+ spacr/resources/icons/spacr_logo_rotation.gif,sha256=bgIx1Hx41Ob90SY-q3PBa3CSxtVRnF9XX-ApUSr0wvY,1502560
48
+ spacr/resources/icons/train_cellpose.png,sha256=_PZ_R_B6azuUACmscScAkugmgLZvCPKQFGIAsszqNLk,3858
49
+ spacr/resources/icons/umap.png,sha256=dOLF3DeLYy9k0nkUybiZMe1wzHQwLJFRmgccppw-8bI,27457
50
+ spacr/resources/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model,sha256=z8BbHWZPRnE9D_BHO0fBREE85c1vkltDs-incs2ytXQ,26566572
51
+ spacr/resources/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv,sha256=fBAGuL_B8ERVdVizO3BHozTDSbZUh1yFzsYK3wkQN68,420
52
+ spacr/resources/models/cp/toxo_pv_lumen.CP_model,sha256=2y_CindYhmTvVwBH39SNILF3rI3x9SsRn6qrMxHy3l0,26562451
53
+ spacr-0.2.3.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
54
+ spacr-0.2.3.dist-info/METADATA,sha256=mZZJ6JqrQ9ylV-VttPd1xyx6U7mtAgLZhB-8ghjl6bQ,5049
55
+ spacr-0.2.3.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
56
+ spacr-0.2.3.dist-info/entry_points.txt,sha256=BMC0ql9aNNpv8lUZ8sgDLQMsqaVnX5L535gEhKUP5ho,296
57
+ spacr-0.2.3.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
58
+ spacr-0.2.3.dist-info/RECORD,,