PyPI - spacr - Versions diffs - 0.2.1__py3-none-any.whl → 0.2.21__py3-none-any.whl - Mend

spacr 0.2.1py3-none-any.whl → 0.2.21py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (90) hide show

spacr/gui.py +2 -1
spacr/gui_elements.py +2 -7
spacr/resources/icons/abort.png +0 -0
spacr/resources/icons/classify.png +0 -0
spacr/resources/icons/make_masks.png +0 -0
spacr/resources/icons/mask.png +0 -0
spacr/resources/icons/measure.png +0 -0
spacr/resources/icons/recruitment.png +0 -0
spacr/resources/icons/regression.png +0 -0
spacr/resources/icons/run.png +0 -0
spacr/resources/icons/umap.png +0 -0
{spacr-0.2.1.dist-info → spacr-0.2.21.dist-info}/METADATA +1 -1
spacr-0.2.21.dist-info/RECORD +56 -0
spacr/alpha.py +0 -807
spacr/annotate_app.py +0 -670
spacr/annotate_app_v2.py +0 -670
spacr/app_make_masks_v2.py +0 -686
spacr/classify_app.py +0 -201
spacr/cli.py +0 -41
spacr/foldseek.py +0 -779
spacr/get_alfafold_structures.py +0 -72
spacr/gui_2.py +0 -157
spacr/gui_annotate.py +0 -145
spacr/gui_classify_app.py +0 -201
spacr/gui_make_masks_app.py +0 -927
spacr/gui_make_masks_app_v2.py +0 -688
spacr/gui_mask_app.py +0 -249
spacr/gui_measure_app.py +0 -246
spacr/gui_run.py +0 -58
spacr/gui_sim_app.py +0 -0
spacr/gui_wrappers.py +0 -149
spacr/icons/abort.png +0 -0
spacr/icons/abort.svg +0 -1
spacr/icons/download.png +0 -0
spacr/icons/download.svg +0 -1
spacr/icons/download_for_offline_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.png +0 -0
spacr/icons/download_for_offline_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.svg +0 -1
spacr/icons/logo_spacr.png +0 -0
spacr/icons/make_masks.png +0 -0
spacr/icons/make_masks.svg +0 -1
spacr/icons/map_barcodes.png +0 -0
spacr/icons/map_barcodes.svg +0 -1
spacr/icons/mask.png +0 -0
spacr/icons/mask.svg +0 -1
spacr/icons/measure.png +0 -0
spacr/icons/measure.svg +0 -1
spacr/icons/play_circle_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.png +0 -0
spacr/icons/play_circle_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.svg +0 -1
spacr/icons/run.png +0 -0
spacr/icons/run.svg +0 -1
spacr/icons/sequencing.png +0 -0
spacr/icons/sequencing.svg +0 -1
spacr/icons/settings.png +0 -0
spacr/icons/settings.svg +0 -1
spacr/icons/settings_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.png +0 -0
spacr/icons/settings_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.svg +0 -1
spacr/icons/stop_circle_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.png +0 -0
spacr/icons/stop_circle_100dp_E8EAED_FILL0_wght100_GRAD-25_opsz48.svg +0 -1
spacr/icons/theater_comedy_100dp_E8EAED_FILL0_wght100_GRAD200_opsz48.png +0 -0
spacr/icons/theater_comedy_100dp_E8EAED_FILL0_wght100_GRAD200_opsz48.svg +0 -1
spacr/make_masks_app.py +0 -929
spacr/make_masks_app_v2.py +0 -688
spacr/mask_app.py +0 -249
spacr/measure_app.py +0 -246
spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model +0 -0
spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv +0 -23
spacr/models/cp/toxo_pv_lumen.CP_model +0 -0
spacr/old_code.py +0 -358
spacr/resources/icons/abort.svg +0 -1
spacr/resources/icons/annotate.svg +0 -1
spacr/resources/icons/classify.svg +0 -1
spacr/resources/icons/download.svg +0 -1
spacr/resources/icons/icon.psd +0 -0
spacr/resources/icons/make_masks.svg +0 -1
spacr/resources/icons/map_barcodes.svg +0 -1
spacr/resources/icons/mask.svg +0 -1
spacr/resources/icons/measure.svg +0 -1
spacr/resources/icons/run.svg +0 -1
spacr/resources/icons/run_2.png +0 -0
spacr/resources/icons/run_2.svg +0 -1
spacr/resources/icons/sequencing.svg +0 -1
spacr/resources/icons/settings.svg +0 -1
spacr/resources/icons/train_cellpose.svg +0 -1
spacr/test_gui.py +0 -0
spacr-0.2.1.dist-info/RECORD +0 -126
/spacr/resources/icons/{cellpose.png → cellpose_all.png} +0 -0
{spacr-0.2.1.dist-info → spacr-0.2.21.dist-info}/LICENSE +0 -0
{spacr-0.2.1.dist-info → spacr-0.2.21.dist-info}/WHEEL +0 -0
{spacr-0.2.1.dist-info → spacr-0.2.21.dist-info}/entry_points.txt +0 -0
{spacr-0.2.1.dist-info → spacr-0.2.21.dist-info}/top_level.txt +0 -0

spacr/gui_wrappers.py DELETED Viewed

@@ -1,149 +0,0 @@
-import traceback, matplotlib, spacr
-import matplotlib.pyplot as plt
-matplotlib.use('Agg')
-fig_queue = None
-def spacrFigShow_v1():
-    """
-    Replacement for plt.show() that queues figures instead of displaying them.
-    """
-    global fig_queue
-    fig = plt.gcf()
-    fig_queue.put(fig)
-    plt.close(fig)
-def spacrFigShow(fig_queue=None):
-    """
-    Replacement for plt.show() that queues figures instead of displaying them.
-    """
-    fig = plt.gcf()
-    if fig_queue:
-        fig_queue.put(fig)
-    else:
-        fig.show()
-    plt.close(fig)
-def preprocess_generate_masks_wrapper(settings, q, fig_queue):
-    """
-    Wraps the measure_crop function to integrate with GUI processes.
-    Parameters:
-    - settings: dict, The settings for the measure_crop function.
-    - q: multiprocessing.Queue, Queue for logging messages to the GUI.
-    - fig_queue: multiprocessing.Queue, Queue for sending figures to the GUI.
-    """
-    # Temporarily override plt.show
-    original_show = plt.show
-    plt.show = lambda: spacrFigShow(fig_queue)
-    try:
-        spacr.core.preprocess_generate_masks(src=settings['src'], settings=settings)
-    except Exception as e:
-        errorMessage = f"Error during processing: {e}"
-        q.put(errorMessage)
-        traceback.print_exc()
-    finally:
-        plt.show = original_show
-def measure_crop_wrapper(settings, q, fig_queue):
-    """
-    Wraps the measure_crop function to integrate with GUI processes.
-    Parameters:
-    - settings: dict, The settings for the measure_crop function.
-    - q: multiprocessing.Queue, Queue for logging messages to the GUI.
-    - fig_queue: multiprocessing.Queue, Queue for sending figures to the GUI.
-    """
-    # Temporarily override plt.show
-    original_show = plt.show
-    plt.show = lambda: spacrFigShow(fig_queue)
-    try:
-        print('start')
-        spacr.measure.measure_crop(settings=settings)
-    except Exception as e:
-        errorMessage = f"Error during processing: {e}"
-        q.put(errorMessage)
-        traceback.print_exc()
-    finally:
-        plt.show = original_show
-def sequencing_wrapper(settings, q, fig_queue):
-    # Temporarily override plt.show
-    original_show = plt.show
-    plt.show = lambda: spacrFigShow(fig_queue)
-    try:
-        spacr.sequencing.analyze_reads(settings=settings)
-    except Exception as e:
-        errorMessage = f"Error during processing: {e}"
-        q.put(errorMessage)
-        traceback.print_exc()
-    finally:
-        plt.show = original_show
-def umap_wrapper(settings, q, fig_queue):
-    # Temporarily override plt.show
-    original_show = plt.show
-    plt.show = lambda: spacrFigShow(fig_queue)
-    try:
-        spacr.core.generate_image_umap(settings=settings)
-    except Exception as e:
-        errorMessage = f"Error during processing: {e}"
-        q.put(errorMessage)
-        traceback.print_exc()
-    finally:
-        plt.show = original_show
-def train_test_model_wrapper(settings, q, fig_queue):
-    """
-    Wraps the measure_crop function to integrate with GUI processes.
-    Parameters:
-    - settings: dict, The settings for the measure_crop function.
-    - q: multiprocessing.Queue, Queue for logging messages to the GUI.
-    - fig_queue: multiprocessing.Queue, Queue for sending figures to the GUI.
-    """
-    # Temporarily override plt.show
-    original_show = plt.show
-    plt.show = lambda: spacrFigShow(fig_queue)
-    try:
-        spacr.core.train_test_model(settings['src'], settings=settings)
-    except Exception as e:
-        errorMessage = f"Error during processing: {e}"
-        q.put(errorMessage)  # Send the error message to the GUI via the queue
-        traceback.print_exc()
-    finally:
-        plt.show = original_show  # Restore the original plt.show function
-def run_multiple_simulations_wrapper(settings, q, fig_queue):
-    """
-    Wraps the run_multiple_simulations function to integrate with GUI processes.
-    Parameters:
-    - settings: dict, The settings for the run_multiple_simulations function.
-    - q: multiprocessing.Queue, Queue for logging messages to the GUI.
-    - fig_queue: multiprocessing.Queue, Queue for sending figures to the GUI.
-    """
-    # Temporarily override plt.show
-    original_show = plt.show
-    plt.show = lambda: spacrFigShow(fig_queue)
-    try:
-        spacr.sim.run_multiple_simulations(settings=settings)
-    except Exception as e:
-        errorMessage = f"Error during processing: {e}"
-        q.put(errorMessage)  # Send the error message to the GUI via the queue
-        traceback.print_exc()
-    finally:
-        plt.show = original_show  # Restore the original plt.show function

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spacr 0.2.1__py3-none-any.whl → 0.2.21__py3-none-any.whl

spacr 0.2.1py3-none-any.whl → 0.2.21py3-none-any.whl