spacr 0.1.1__py3-none-any.whl → 0.1.7__py3-none-any.whl

spacr/utils.py

@@ -1,4 +1,4 @@
-import sys, os, re, sqlite3, torch, torchvision, random, string, shutil, cv2, tarfile, glob
+import sys, os, re, sqlite3, torch, torchvision, random, string, shutil, cv2, tarfile, glob, psutil, platform, signal
 
 import numpy as np
 from cellpose import models as cp_models
@@ -72,6 +72,64 @@ from sklearn.cluster import KMeans
 from scipy import stats
 
 from .logger import log_function_call
+from multiprocessing import set_start_method, get_start_method
+
+import tkinter as tk
+from tkinter import ttk
+import tkinter.font as tkFont
+
+def reset_mp():
+    current_method = get_start_method()
+    system = platform.system()
+    
+    if system == 'Windows':
+        if current_method != 'spawn':
+            set_start_method('spawn', force=True)
+    elif system in ('Linux', 'Darwin'):  # Darwin is macOS
+        if current_method != 'fork':
+            set_start_method('fork', force=True)
+
+def is_multiprocessing_process(process):
+    """ Check if the process is a multiprocessing process. """
+    try:
+        for cmd in process.cmdline():
+            if 'multiprocessing' in cmd:
+                return True
+    except (psutil.NoSuchProcess, psutil.AccessDenied, psutil.ZombieProcess):
+        pass
+    return False
+
+def close_file_descriptors():
+    """ Close file descriptors and shared memory objects. """
+    import resource
+
+    soft, hard = resource.getrlimit(resource.RLIMIT_NOFILE)
+    for fd in range(3, soft):
+        try:
+            os.close(fd)
+        except OSError:
+            pass
+
+def close_multiprocessing_processes():
+    """ Close all multiprocessing processes. """
+    current_pid = os.getpid()
+    for proc in psutil.process_iter(['pid', 'cmdline']):
+        try:
+            # Skip the current process
+            if proc.info['pid'] == current_pid:
+                continue
+            
+            # Check if the process is a multiprocessing process
+            if is_multiprocessing_process(proc):
+                proc.terminate()
+                proc.wait(timeout=5)  # Wait up to 5 seconds for the process to terminate
+                print(f"Terminated process {proc.info['pid']}")
+        
+        except (psutil.NoSuchProcess, psutil.AccessDenied, psutil.ZombieProcess) as e:
+            print(f"Failed to terminate process {proc.info['pid']}: {e}")
+
+    # Close file descriptors
+    close_file_descriptors()
 
 def check_mask_folder(src,mask_fldr):
     
@@ -92,19 +150,14 @@ def check_mask_folder(src,mask_fldr):
 
 def smooth_hull_lines(cluster_data):
     hull = ConvexHull(cluster_data)
-
     # Extract vertices of the hull
     vertices = hull.points[hull.vertices]
-
     # Close the loop
     vertices = np.vstack([vertices, vertices[0, :]])
-
     # Parameterize the vertices
     tck, u = splprep(vertices.T, u=None, s=0.0)
-
     # Evaluate spline at new parameter values
     new_points = splev(np.linspace(0, 1, 100), tck)
-
     return new_points[0], new_points[1]
 
 def _gen_rgb_image(image, channels):
@@ -419,7 +472,7 @@ def is_list_of_lists(var):
         return True
     return False
 
-def normalize_to_dtype(array, p1=2, p2=98, percentile_list=None):
+def normalize_to_dtype(array, p1=2, p2=98, percentile_list=None, new_dtype=None):
     """
     Normalize each image in the stack to its own percentiles.
 
@@ -438,7 +491,16 @@ def normalize_to_dtype(array, p1=2, p2=98, percentile_list=None):
     The normalized stack with the same shape as the input stack.
     """
 
-    out_range = (0, np.iinfo(array.dtype).max)
+    if new_dtype is None:
+        out_range = (0, np.iinfo(array.dtype).max)
+    elif new_dtype in [np.uint8, np.uint16]:
+        out_range = (0, np.iinfo(new_dtype).max)
+    elif new_dtype in ['uint8', 'uint16']:
+        new_dtype = np.uint8 if new_dtype == 'uint8' else np.uint16
+        out_range = (0, np.iinfo(new_dtype).max)
+    else:
+        out_range = (0, np.iinfo(array.dtype).max)
+
     nimg = array.shape[2]
     new_stack = np.empty_like(array, dtype=array.dtype)
 
@@ -3997,7 +4059,7 @@ def _merge_cells_based_on_parasite_overlap(parasite_mask, cell_mask, nuclei_mask
     
     # Relabel the merged cell mask
     relabeled_cell_mask, _ = label(cell_mask, return_num=True)
-    return relabeled_cell_mask
+    return relabeled_cell_mask.astype(np.uint16)
 
 def adjust_cell_masks(parasite_folder, cell_folder, nuclei_folder, overlap_threshold=5, perimeter_threshold=30):
 
@@ -4037,7 +4099,7 @@ def adjust_cell_masks(parasite_folder, cell_folder, nuclei_folder, overlap_thres
         merged_cell_mask = _merge_cells_based_on_parasite_overlap(parasite_mask, cell_mask, nuclei_mask, overlap_threshold, perimeter_threshold)
         
         # Force 16 bit
-        mamerged_cell_masksk = merged_cell_mask.astype(np.uint16)
+        #merged_cell_mask = merged_cell_mask.astype(np.uint16)
         
         # Overwrite the original cell mask file with the merged result
         np.save(cell_path, merged_cell_mask)
@@ -4329,4 +4391,4 @@ def correct_masks(src):
 
     cell_path = os.path.join(src,'norm_channel_stack', 'cell_mask_stack')
     convert_and_relabel_masks(cell_path)
-    _load_and_concatenate_arrays(src, [0,1,2,3], 1, 0, 2)
+    _load_and_concatenate_arrays(src, [0,1,2,3], 1, 0, 2)

{spacr-0.1.1.dist-info → spacr-0.1.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: spacr
-Version: 0.1.1
+Version: 0.1.7
 Summary: Spatial phenotype analysis of crisp screens (SpaCr)
 Home-page: https://github.com/EinarOlafsson/spacr
 Author: Einar Birnir Olafsson
@@ -9,7 +9,6 @@ Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 License-File: LICENSE
-Requires-Dist: dgl ==0.9.1
 Requires-Dist: torch <3.0,>=2.2.1
 Requires-Dist: torchvision <1.0,>=0.17.1
 Requires-Dist: torch-geometric <3.0,>=2.5.1
@@ -40,8 +39,9 @@ Requires-Dist: ttf-opensans >=2020.10.30
 Requires-Dist: customtkinter <6.0,>=5.2.2
 Requires-Dist: biopython <2.0,>=1.80
 Requires-Dist: lxml <6.0,>=5.1.0
+Requires-Dist: huggingface-hub <0.25,>=0.24.0
 Provides-Extra: dev
-Requires-Dist: pytest >=3.9 ; extra == 'dev'
+Requires-Dist: pytest <3.11,>=3.9 ; extra == 'dev'
 Provides-Extra: full
 Requires-Dist: opencv-python ; extra == 'full'
 Provides-Extra: headless
@@ -63,7 +63,7 @@ Requires-Dist: opencv-python-headless ; extra == 'headless'
 SpaCr
 =====
 
-Spatial phenotype analysis of CRISPR-Cas9 screens (SpaCr). The spatial organization of organelles and proteins within cells constitutes a key level of functional regulation. In the context of infectious disease, the spatial relationships between host cell structures and intracellular pathogens are critical to understand host clearance mechanisms and how pathogens evade them. SpaCr is a Python-based software package for generating single-cell image data for deep-learning sub-cellular/cellular phenotypic classification from pooled genetic CRISPR-Cas9 screens. SpaCr provides a flexible toolset to extract single-cell images and measurements from high-content cell painting experiments, train deep-learning models to classify cellular/subcellular phenotypes, simulate, and analyze pooled CRISPR-Cas9 imaging screens.
+Spatial phenotype analysis of CRISPR-Cas9 screens (SpaCr). The spatial organization of organelles and proteins within cells constitutes a key level of functional regulation. In the context of infectious disease, the spatial relationships between host cell structures and intracellular pathogens are critical to understanding host clearance mechanisms and how pathogens evade them. SpaCr is a Python-based software package for generating single-cell image data for deep-learning sub-cellular/cellular phenotypic classification from pooled genetic CRISPR-Cas9 screens. SpaCr provides a flexible toolset to extract single-cell images and measurements from high-content cell painting experiments, train deep-learning models to classify cellular/subcellular phenotypes, simulate, and analyze pooled CRISPR-Cas9 imaging screens.
 
 Features
 --------
@@ -72,9 +72,9 @@ Features
 
 -  **Object Measurements:** Measurements for each object including scikit-image-regionprops, intensity percentiles, shannon-entropy, pearsons and manders correlations, homogeneity, and radial distribution. Measurements are saved to a SQL database in object-level tables.
 
--  **Crop Images:** Objects (e.g., cells) can be saved as PNGs from the object area or bounding box area of each object. Object paths are saved in a SQL database that can be annotated and used to train CNNs/Transformer models for classification tasks.
+-  **Crop Images:** Save objects (cells, nuclei, pathogen, cytoplasm) as images. Object image paths are saved in a SQL database.
 
--  **Train CNNs or Transformers:** Train Torch Convolutional Neural Networks (CNNs) or Transformers to classify single object images. Train Torch models with IRM/ERM, checkpointing.
+-  **Train CNNs or Transformers:** Train Torch models to classify single object images.
 
 -  **Manual Annotation:** Supports manual annotation of single-cell images and segmentation to refine training datasets for training CNNs/Transformers or cellpose, respectively.
 
@@ -91,29 +91,20 @@ Features
 Installation
 ------------
 
-Requires Tkinter for graphical user interface features.
+If using Windows, switch to Linux—it's free, open-source, and better.
 
-Ubuntu
-~~~~~~
+Before installing SpaCr on OSX ensure OpenMP is installed::
 
-Before installing SpaCr, ensure Tkinter is installed:
+   brew install libomp
 
-(Tkinter is included with the standard Python installation on macOS, and Windows)
-
-On Linux:
-
-::
+SpaCr GUI requires Tkinter. On Linux, ensure Tkinter is installed. (Tkinter is included with the standard Python installation on macOS and Windows)::
 
    sudo apt-get install python3-tk
 
-Install spacr with pip
-
-::
+Install SpaCr with pip::
 
    pip install spacr
 
-Run spacr GUI:
-
-::
+Run SpaCr GUI::
 
-   gui
+   spacr

spacr-0.1.7.dist-info/RECORD

@@ -0,0 +1,60 @@
+spacr/__init__.py,sha256=8uhfJ_RcnX4OmvflNRcts4zxnyfML6xiyIeFGZeMpXg,1416
+spacr/__main__.py,sha256=bkAJJD2kjIqOP-u1kLvct9jQQCeUXzlEjdgitwi1Lm8,75
+spacr/alpha.py,sha256=Y95sLEfpK2OSYKRn3M8eUOU33JJeXfV8zhrC4KnwSTY,35244
+spacr/annotate_app.py,sha256=imQ7ZEXDyM6ce1dxZ1xUS1-KequuF_NCI4xCaPLjvco,29275
+spacr/annotate_app_v2.py,sha256=imQ7ZEXDyM6ce1dxZ1xUS1-KequuF_NCI4xCaPLjvco,29275
+spacr/app_annotate.py,sha256=iBAD_qo5_3cQGAmQbtVYXuJd2n8cBH_bfCtqmWcB67s,23610
+spacr/app_classify.py,sha256=urTP_wlZ58hSyM5a19slYlBxN0PdC-9-ga0hvq8CGWc,165
+spacr/app_make_masks.py,sha256=0N8Wfby3HaVX4m9tOyBy7OQolamYG9lVwmnlzkK4uaE,44993
+spacr/app_make_masks_v2.py,sha256=OkNeskNbgep8wQa4ES3jpJjZLfn4yIkGwQOd9r0spfA,30497
+spacr/app_mask.py,sha256=l-dBY8ftzCMdDe6-pXc2Nh_u-idNL9G7UOARiLJBtds,153
+spacr/app_measure.py,sha256=_K7APYIeOKpV6e_LcqabBjvEi7mfq9Fch8175x1x0k8,162
+spacr/app_sequencing.py,sha256=DjG26jy4cpddnV8WOOAIiExtOe9MleVMY4MFa5uTo5w,157
+spacr/app_umap.py,sha256=ZWAmf_OsIKbYvolYuWPMYhdlVe-n2CADoJulAizMiEo,153
+spacr/chris.py,sha256=YlBjSgeZaY8HPy6jkrT_ISAnCMAKVfvCxF0I9eAZLFM,2418
+spacr/classify_app.py,sha256=Zi15ryc1ocYitRF4kyxlC27XxGyzfSPdvj2d6ZrSh7E,8446
+spacr/cli.py,sha256=507jfOOEV8BoL4eeUcblvH-iiDHdBrEVJLu1ghAAPSc,1800
+spacr/core.py,sha256=jNlDk-0vb0fpteNT3bsNpfLRLAuwsx7SPlcajT1eCuw,160139
+spacr/deep_spacr.py,sha256=bIa_txVJBy9zrKyqX0tpNQw0nNCUo77pSSUJiYy1egE,36994
+spacr/foldseek.py,sha256=YIP1d4Ci6CeA9jSyiv-HTDbNmAmcSM9Y_DaOs7wYzLY,33546
+spacr/get_alfafold_structures.py,sha256=ehx_MQgb12k3hFecP6cYVlm5TLO8iWjgevy8ESyS3cw,3544
+spacr/graph_learning.py,sha256=1tR-ZxvXE3dBz1Saw7BeVFcrsUFu9OlUZeZVifih9eo,13070
+spacr/gui.py,sha256=kvQ0X9nyZz_BWsOyJSNSv7gEG1ZuTqjz4EH78e0uul4,7783
+spacr/gui_2.py,sha256=ZAI5quQYbhQJ40vK0NCqU_UMSPLkpfeQpomBWUSM0fc,6946
+spacr/gui_annotate.py,sha256=ugBksLGOHdtOLlEuRyyc59TrkYKu3rDf8JxEgiBSVao,6536
+spacr/gui_classify_app.py,sha256=Zi15ryc1ocYitRF4kyxlC27XxGyzfSPdvj2d6ZrSh7E,8446
+spacr/gui_core.py,sha256=qycN0XSe4PcdvvXSagss66SY51RzxT-trv1Z-7mBoig,28452
+spacr/gui_elements.py,sha256=u3T6Ssx6HC_S4NDaNlDeEGNWaheFoGDRnL8Uyn0hvJ4,15203
+spacr/gui_make_masks_app.py,sha256=tl4M4Q2WQgrrwjRBJVevxJxpNowqzPhWkdCOm2UfRbw,45053
+spacr/gui_make_masks_app_v2.py,sha256=X3izTBXdCZDlkVe-fbG-jmCQtcAbmK0OIivjyWaLhug,30576
+spacr/gui_mask_app.py,sha256=mhTl_XzXLFl8Tx3WYEMpdYB_qw9u5JJa0EdkvlcIzAE,10706
+spacr/gui_measure_app.py,sha256=_C1-XFL5HSquUEEbM_NcxdvHx-socPFCx85MBG4d6xo,10598
+spacr/gui_run.py,sha256=0x85MJqFtREuWuNeIRLB8hFeibKGszfN14POQQWzPDQ,1998
+spacr/gui_sim_app.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+spacr/gui_utils.py,sha256=tl19y0EXFNT73I_AnDFafe7UQga9FL7EQ46o_XCFHFI,5821
+spacr/gui_wrappers.py,sha256=-E1SFOmtp7_nfg9QzajI7GJcAcaMug92Pjw7pS1YzjY,4656
+spacr/io.py,sha256=IoERqSwoxJrInYl-E0WfwFOEDZXFdJofk5DmpbyLGWM,112077
+spacr/logger.py,sha256=7Zqr3TuuOQLWT32gYr2q1qvv7x0a2JhLANmZcnBXAW8,670
+spacr/make_masks_app.py,sha256=iGaTwhowoe2JMOSOf8bJwQZTooRhLQx7KO0ewnAmqDY,45138
+spacr/make_masks_app_v2.py,sha256=X3izTBXdCZDlkVe-fbG-jmCQtcAbmK0OIivjyWaLhug,30576
+spacr/mask_app.py,sha256=mhTl_XzXLFl8Tx3WYEMpdYB_qw9u5JJa0EdkvlcIzAE,10706
+spacr/measure.py,sha256=CL8bI3ujtQxsRuQJUVSXmThQFPzQvTEDK38DSELpSQo,55746
+spacr/measure_app.py,sha256=_C1-XFL5HSquUEEbM_NcxdvHx-socPFCx85MBG4d6xo,10598
+spacr/old_code.py,sha256=jw67DAGoLBd7mWofVzRJSEmCI1Qrff26zIo65SEkV00,13817
+spacr/plot.py,sha256=DYJEoK1kz2ih6ZGvKiA3xTqeIeKQNhuQKwgrscopFxA,69101
+spacr/sequencing.py,sha256=fHZRnoMSxmhMdadkei3lUeBdckqFyptWdQyWsDW3aaU,83304
+spacr/settings.py,sha256=WVM24OZconm3toadtjvBPZjFMn1m4SzHlXQsC52HfUU,47464
+spacr/sim.py,sha256=FveaVgBi3eypO2oVB5Dx-v0CC1Ny7UPfXkJiiRRodAk,71212
+spacr/sim_app.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+spacr/timelapse.py,sha256=KMYCgHzf9LTZe-lWl5mvH2EjbKRE6OhpwdY13wEumGc,39504
+spacr/utils.py,sha256=149Bbha9OXAKyDwABgHz5h4O7Gqy6aeFLA1pMSq311s,186966
+spacr/version.py,sha256=axH5tnGwtgSnJHb5IDhiu4Zjk5GhLyAEDRe-rnaoFOA,409
+spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model,sha256=z8BbHWZPRnE9D_BHO0fBREE85c1vkltDs-incs2ytXQ,26566572
+spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv,sha256=fBAGuL_B8ERVdVizO3BHozTDSbZUh1yFzsYK3wkQN68,420
+spacr/models/cp/toxo_pv_lumen.CP_model,sha256=2y_CindYhmTvVwBH39SNILF3rI3x9SsRn6qrMxHy3l0,26562451
+spacr-0.1.7.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
+spacr-0.1.7.dist-info/METADATA,sha256=XEIxRB33Cob2TjCbNvNhJCBiNacpow3AkEl-Wj02wM4,5049
+spacr-0.1.7.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+spacr-0.1.7.dist-info/entry_points.txt,sha256=BMC0ql9aNNpv8lUZ8sgDLQMsqaVnX5L535gEhKUP5ho,296
+spacr-0.1.7.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
+spacr-0.1.7.dist-info/RECORD,,

spacr-0.1.7.dist-info/entry_points.txt

@@ -0,0 +1,8 @@
+[console_scripts]
+annotate = spacr.app_annotate:gui_annotate
+classify = spacr.app_classify:start_classify_app
+make_masks = spacr.app_make_masks:gui_make_masks
+mask = spacr.app_mask:start_mask_app
+measure = spacr.app_measure:start_measure_app
+sim = spacr.app_sim:gui_sim
+spacr = spacr.gui:gui_app

spacr-0.1.1.dist-info/RECORD

@@ -1,40 +0,0 @@
-spacr/__init__.py,sha256=rnb_oYH6HmC1KvJmc7ymrdtHvmMW5t7bn8tJa03cxcA,1286
-spacr/__main__.py,sha256=bkAJJD2kjIqOP-u1kLvct9jQQCeUXzlEjdgitwi1Lm8,75
-spacr/alpha.py,sha256=Y95sLEfpK2OSYKRn3M8eUOU33JJeXfV8zhrC4KnwSTY,35244
-spacr/annotate_app.py,sha256=2X_xnXFN_w19RG99awsTPLzQfQZyQdwbaT-lcRxyV-w,20670
-spacr/annotate_app_v2.py,sha256=kvikj_QbN4EHdyYwB0kjEepEuq2uVwfAF-VJ531qO3Q,22647
-spacr/chris.py,sha256=YlBjSgeZaY8HPy6jkrT_ISAnCMAKVfvCxF0I9eAZLFM,2418
-spacr/cli.py,sha256=507jfOOEV8BoL4eeUcblvH-iiDHdBrEVJLu1ghAAPSc,1800
-spacr/core.py,sha256=m9fsk-qDPow4AzOYpTIsd4jT7PF_L_4y5xillR5eRdk,160253
-spacr/deep_spacr.py,sha256=N0o7ILD2p1FTfU4DFxnpjs00xjLhwib-ev0XGqA6muU,37035
-spacr/foldseek.py,sha256=YIP1d4Ci6CeA9jSyiv-HTDbNmAmcSM9Y_DaOs7wYzLY,33546
-spacr/get_alfafold_structures.py,sha256=ehx_MQgb12k3hFecP6cYVlm5TLO8iWjgevy8ESyS3cw,3544
-spacr/graph_learning.py,sha256=1tR-ZxvXE3dBz1Saw7BeVFcrsUFu9OlUZeZVifih9eo,13070
-spacr/gui.py,sha256=ugBksLGOHdtOLlEuRyyc59TrkYKu3rDf8JxEgiBSVao,6536
-spacr/gui_2.py,sha256=ZAI5quQYbhQJ40vK0NCqU_UMSPLkpfeQpomBWUSM0fc,6946
-spacr/gui_classify_app.py,sha256=W_epjHsM3P9JfYDWFre694r9suXR_oEtBLvs6WAE_po,7860
-spacr/gui_mask_app.py,sha256=Lmz1_PLUSuYYLWp36xnYSkKXqEn2bgaHIpW0uOeq4gQ,10403
-spacr/gui_measure_app.py,sha256=kB-BL0_6vGo5MWND7e2OdLTz4MPa77K9tPYu3eDwBnk,10079
-spacr/gui_sim_app.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-spacr/gui_utils.py,sha256=FFFpDzlNyolv1iQtawwD_acctvUpMsFsbVMCrdwyuCM,53167
-spacr/io.py,sha256=IoERqSwoxJrInYl-E0WfwFOEDZXFdJofk5DmpbyLGWM,112077
-spacr/logger.py,sha256=7Zqr3TuuOQLWT32gYr2q1qvv7x0a2JhLANmZcnBXAW8,670
-spacr/mask_app.py,sha256=jlKmj_evveIkkyH3PYEcAshcLXN0DOPWB1oc4hAwq9E,44201
-spacr/measure.py,sha256=0FRsHF5ftar4JZ0B_6Nq-NlyP5t6aiO0IrskyikIBEE,55000
-spacr/old_code.py,sha256=jw67DAGoLBd7mWofVzRJSEmCI1Qrff26zIo65SEkV00,13817
-spacr/plot.py,sha256=lrwU51OTWfby1wx73XGyjYmTjLVia7WOmGH5LZZ-4jM,67145
-spacr/sequencing.py,sha256=U_TBJGNfOBfokGegUe950W_KPfm51VOgpfibXoZ8RMQ,83974
-spacr/settings.py,sha256=Tr2fo2I75FGfmEVQOONOpGwqXMzFCrYMz4NAxav3ckg,21183
-spacr/sim.py,sha256=FveaVgBi3eypO2oVB5Dx-v0CC1Ny7UPfXkJiiRRodAk,71212
-spacr/timelapse.py,sha256=KMYCgHzf9LTZe-lWl5mvH2EjbKRE6OhpwdY13wEumGc,39504
-spacr/utils.py,sha256=O7dpCF3bU95d2v0UuPFeJtzXYrkh0r-6aLxaqkKkFwY,184619
-spacr/version.py,sha256=axH5tnGwtgSnJHb5IDhiu4Zjk5GhLyAEDRe-rnaoFOA,409
-spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model,sha256=z8BbHWZPRnE9D_BHO0fBREE85c1vkltDs-incs2ytXQ,26566572
-spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv,sha256=fBAGuL_B8ERVdVizO3BHozTDSbZUh1yFzsYK3wkQN68,420
-spacr/models/cp/toxo_pv_lumen.CP_model,sha256=2y_CindYhmTvVwBH39SNILF3rI3x9SsRn6qrMxHy3l0,26562451
-spacr-0.1.1.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
-spacr-0.1.1.dist-info/METADATA,sha256=f4CaWxwjyeC2yAEeYl-3J50QgVGZqTY9dBX9r66LyTM,5157
-spacr-0.1.1.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-spacr-0.1.1.dist-info/entry_points.txt,sha256=xncHsqD9MI5wj0_p4mgZlrB8dHm_g_qF0Ggo1c78LqY,315
-spacr-0.1.1.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
-spacr-0.1.1.dist-info/RECORD,,

spacr-0.1.1.dist-info/entry_points.txt

@@ -1,9 +0,0 @@
-[console_scripts]
-annotate = spacr.annotate_app:gui_annotation
-classify = spacr.gui_classify_app:gui_classify
-gui = spacr.gui:gui_app
-gui2 = spacr.gui_2:gui_app
-make_masks = spacr.mask_app:gui_make_masks
-mask = spacr.gui_mask_app:gui_mask
-measure = spacr.gui_measure_app:gui_measure
-sim = spacr.gui_sim_app:gui_sim