spacr 0.1.16__py3-none-any.whl → 0.1.55__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (24) hide show
  1. spacr/__init__.py +4 -1
  2. spacr/app_annotate.py +3 -3
  3. spacr/app_classify.py +5 -203
  4. spacr/app_make_masks.py +3 -3
  5. spacr/app_make_masks_v2.py +3 -3
  6. spacr/app_mask.py +5 -250
  7. spacr/app_measure.py +5 -250
  8. spacr/app_sequencing.py +8 -0
  9. spacr/app_umap.py +8 -0
  10. spacr/core.py +8 -6
  11. spacr/deep_spacr.py +3 -1
  12. spacr/gui.py +28 -13
  13. spacr/gui_utils.py +878 -871
  14. spacr/measure.py +24 -3
  15. spacr/sequencing.py +1 -17
  16. spacr/settings.py +440 -6
  17. spacr/utils.py +59 -5
  18. {spacr-0.1.16.dist-info → spacr-0.1.55.dist-info}/METADATA +2 -1
  19. {spacr-0.1.16.dist-info → spacr-0.1.55.dist-info}/RECORD +23 -21
  20. spacr-0.1.55.dist-info/entry_points.txt +8 -0
  21. spacr-0.1.16.dist-info/entry_points.txt +0 -8
  22. {spacr-0.1.16.dist-info → spacr-0.1.55.dist-info}/LICENSE +0 -0
  23. {spacr-0.1.16.dist-info → spacr-0.1.55.dist-info}/WHEEL +0 -0
  24. {spacr-0.1.16.dist-info → spacr-0.1.55.dist-info}/top_level.txt +0 -0
{spacr-0.1.16.dist-info → spacr-0.1.55.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: spacr
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- Version: 0.1.16
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+ Version: 0.1.55
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  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
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  Home-page: https://github.com/EinarOlafsson/spacr
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  Author: Einar Birnir Olafsson
@@ -39,6 +39,7 @@ Requires-Dist: ttf-opensans >=2020.10.30
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  Requires-Dist: customtkinter <6.0,>=5.2.2
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  Requires-Dist: biopython <2.0,>=1.80
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  Requires-Dist: lxml <6.0,>=5.1.0
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+ Requires-Dist: huggingface-hub <0.25,>=0.24.0
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  Provides-Extra: dev
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  Requires-Dist: pytest <3.11,>=3.9 ; extra == 'dev'
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  Provides-Extra: full
{spacr-0.1.16.dist-info → spacr-0.1.55.dist-info}/RECORD RENAMED
@@ -1,23 +1,25 @@
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- spacr/__init__.py,sha256=xu2zNv8A523YvDACynkThH2CYqN5mafsu9lfKGjMmIM,1278
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+ spacr/__init__.py,sha256=cHMZ6CcoOfm_3igLgndH3hxDbW8kBx5pqM04zEtlg3w,1339
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  spacr/__main__.py,sha256=bkAJJD2kjIqOP-u1kLvct9jQQCeUXzlEjdgitwi1Lm8,75
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  spacr/alpha.py,sha256=Y95sLEfpK2OSYKRn3M8eUOU33JJeXfV8zhrC4KnwSTY,35244
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  spacr/annotate_app.py,sha256=imQ7ZEXDyM6ce1dxZ1xUS1-KequuF_NCI4xCaPLjvco,29275
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  spacr/annotate_app_v2.py,sha256=imQ7ZEXDyM6ce1dxZ1xUS1-KequuF_NCI4xCaPLjvco,29275
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- spacr/app_annotate.py,sha256=27NzovmbcSa-zdqo9WrFfBcggybhVQmKbgSBDTFnSvU,23588
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- spacr/app_classify.py,sha256=7UKRGW245Chtxc_oCmyS-4omQpffvzzBvsHmC5ey4v8,8665
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- spacr/app_make_masks.py,sha256=ksggY0xBWt7Fgbd451JOabA064kcjiDm8MTslUq1FLo,45088
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- spacr/app_make_masks_v2.py,sha256=csZbUFhOfdHCQ1Wi21bgC1PG8ll5InMqUVmY3-90xlc,30543
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- spacr/app_mask.py,sha256=dDZyIlI71vSMqBT3tC9I3BN8J0kxRf9-h5gBiI7pWZk,11357
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- spacr/app_measure.py,sha256=jOhtqpO6BQSEpeUZA3taR9jThmo0J7BXMq1URzrdyjA,10841
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+ spacr/app_annotate.py,sha256=lnjVLwzwpZ9-5cHuEgCmAC-pAnGQmmWyjTXDF0NV2Ps,23560
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+ spacr/app_classify.py,sha256=urTP_wlZ58hSyM5a19slYlBxN0PdC-9-ga0hvq8CGWc,165
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+ spacr/app_make_masks.py,sha256=0qbZhCnWzqJAhRGCI4j7GdJx8mEBA8j7LxGjWlQHyss,45060
9
+ spacr/app_make_masks_v2.py,sha256=OkNeskNbgep8wQa4ES3jpJjZLfn4yIkGwQOd9r0spfA,30497
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+ spacr/app_mask.py,sha256=l-dBY8ftzCMdDe6-pXc2Nh_u-idNL9G7UOARiLJBtds,153
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+ spacr/app_measure.py,sha256=_K7APYIeOKpV6e_LcqabBjvEi7mfq9Fch8175x1x0k8,162
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+ spacr/app_sequencing.py,sha256=DjG26jy4cpddnV8WOOAIiExtOe9MleVMY4MFa5uTo5w,157
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+ spacr/app_umap.py,sha256=ZWAmf_OsIKbYvolYuWPMYhdlVe-n2CADoJulAizMiEo,153
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  spacr/chris.py,sha256=YlBjSgeZaY8HPy6jkrT_ISAnCMAKVfvCxF0I9eAZLFM,2418
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  spacr/classify_app.py,sha256=Zi15ryc1ocYitRF4kyxlC27XxGyzfSPdvj2d6ZrSh7E,8446
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  spacr/cli.py,sha256=507jfOOEV8BoL4eeUcblvH-iiDHdBrEVJLu1ghAAPSc,1800
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- spacr/core.py,sha256=m9fsk-qDPow4AzOYpTIsd4jT7PF_L_4y5xillR5eRdk,160253
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- spacr/deep_spacr.py,sha256=N0o7ILD2p1FTfU4DFxnpjs00xjLhwib-ev0XGqA6muU,37035
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+ spacr/core.py,sha256=S44olGF8qveg6uBCRDuCP4FZ5dXXVwSfeImolTpQIAs,160372
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+ spacr/deep_spacr.py,sha256=rvqOoY9dadcTcKiABf61Nb8HEMVp1NouFmtAE2ee1T4,37056
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  spacr/foldseek.py,sha256=YIP1d4Ci6CeA9jSyiv-HTDbNmAmcSM9Y_DaOs7wYzLY,33546
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  spacr/get_alfafold_structures.py,sha256=ehx_MQgb12k3hFecP6cYVlm5TLO8iWjgevy8ESyS3cw,3544
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  spacr/graph_learning.py,sha256=1tR-ZxvXE3dBz1Saw7BeVFcrsUFu9OlUZeZVifih9eo,13070
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- spacr/gui.py,sha256=xyf2bmAck8OrbYlvNLpY6rs4EuhuCOxff3f8ZcEZHBQ,6594
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+ spacr/gui.py,sha256=awunZePAu-LH-rPEUhxVTAXXkG5L8oyHz-qHcEX6Im4,7765
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  spacr/gui_2.py,sha256=ZAI5quQYbhQJ40vK0NCqU_UMSPLkpfeQpomBWUSM0fc,6946
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  spacr/gui_annotate.py,sha256=ugBksLGOHdtOLlEuRyyc59TrkYKu3rDf8JxEgiBSVao,6536
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  spacr/gui_classify_app.py,sha256=Zi15ryc1ocYitRF4kyxlC27XxGyzfSPdvj2d6ZrSh7E,8446
@@ -26,29 +28,29 @@ spacr/gui_make_masks_app_v2.py,sha256=X3izTBXdCZDlkVe-fbG-jmCQtcAbmK0OIivjyWaLhu
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  spacr/gui_mask_app.py,sha256=mhTl_XzXLFl8Tx3WYEMpdYB_qw9u5JJa0EdkvlcIzAE,10706
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  spacr/gui_measure_app.py,sha256=_C1-XFL5HSquUEEbM_NcxdvHx-socPFCx85MBG4d6xo,10598
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  spacr/gui_sim_app.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- spacr/gui_utils.py,sha256=emUGYxxk9LOsYk2ozLc6mfglzeb4WqBwYhXwitLLJBA,58746
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+ spacr/gui_utils.py,sha256=8joqzUdN_26VeI2Gsd0Tjh_ArAFzjE323VGSHDJnev4,51624
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  spacr/io.py,sha256=IoERqSwoxJrInYl-E0WfwFOEDZXFdJofk5DmpbyLGWM,112077
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  spacr/logger.py,sha256=7Zqr3TuuOQLWT32gYr2q1qvv7x0a2JhLANmZcnBXAW8,670
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  spacr/make_masks_app.py,sha256=iGaTwhowoe2JMOSOf8bJwQZTooRhLQx7KO0ewnAmqDY,45138
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  spacr/make_masks_app_v2.py,sha256=X3izTBXdCZDlkVe-fbG-jmCQtcAbmK0OIivjyWaLhug,30576
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  spacr/mask_app.py,sha256=mhTl_XzXLFl8Tx3WYEMpdYB_qw9u5JJa0EdkvlcIzAE,10706
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- spacr/measure.py,sha256=0FRsHF5ftar4JZ0B_6Nq-NlyP5t6aiO0IrskyikIBEE,55000
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+ spacr/measure.py,sha256=r5nxxULUyka2L5IVdnmEmnMywChY3a4DWGse3ygIh4Q,56000
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  spacr/measure_app.py,sha256=_C1-XFL5HSquUEEbM_NcxdvHx-socPFCx85MBG4d6xo,10598
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  spacr/old_code.py,sha256=jw67DAGoLBd7mWofVzRJSEmCI1Qrff26zIo65SEkV00,13817
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  spacr/plot.py,sha256=lrwU51OTWfby1wx73XGyjYmTjLVia7WOmGH5LZZ-4jM,67145
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- spacr/sequencing.py,sha256=U_TBJGNfOBfokGegUe950W_KPfm51VOgpfibXoZ8RMQ,83974
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- spacr/settings.py,sha256=Tr2fo2I75FGfmEVQOONOpGwqXMzFCrYMz4NAxav3ckg,21183
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+ spacr/sequencing.py,sha256=fHZRnoMSxmhMdadkei3lUeBdckqFyptWdQyWsDW3aaU,83304
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+ spacr/settings.py,sha256=1tcgdn4RWbX7_Qto0nHDP_f202sT7d_9-UU_W-q8cPc,45639
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  spacr/sim.py,sha256=FveaVgBi3eypO2oVB5Dx-v0CC1Ny7UPfXkJiiRRodAk,71212
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  spacr/sim_app.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  spacr/timelapse.py,sha256=KMYCgHzf9LTZe-lWl5mvH2EjbKRE6OhpwdY13wEumGc,39504
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- spacr/utils.py,sha256=O7dpCF3bU95d2v0UuPFeJtzXYrkh0r-6aLxaqkKkFwY,184619
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+ spacr/utils.py,sha256=MM31yWquNDFmhxAU3l3Qx64peQJ6VWOuNGS6gkia5AY,186541
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  spacr/version.py,sha256=axH5tnGwtgSnJHb5IDhiu4Zjk5GhLyAEDRe-rnaoFOA,409
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  spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model,sha256=z8BbHWZPRnE9D_BHO0fBREE85c1vkltDs-incs2ytXQ,26566572
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  spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv,sha256=fBAGuL_B8ERVdVizO3BHozTDSbZUh1yFzsYK3wkQN68,420
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  spacr/models/cp/toxo_pv_lumen.CP_model,sha256=2y_CindYhmTvVwBH39SNILF3rI3x9SsRn6qrMxHy3l0,26562451
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- spacr-0.1.16.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
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- spacr-0.1.16.dist-info/METADATA,sha256=-VoJLJbzVVNvGhVmWA2uh5DydW0W4KjiCnz5WYwgLlQ,5004
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- spacr-0.1.16.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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- spacr-0.1.16.dist-info/entry_points.txt,sha256=e6tBSk-bac5ypML_iWIROnQ-hDSLZT_sGpGviPNHG4g,277
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- spacr-0.1.16.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
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- spacr-0.1.16.dist-info/RECORD,,
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+ spacr-0.1.55.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
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+ spacr-0.1.55.dist-info/METADATA,sha256=uTrkXO1JPmHgXWuuZJzsd8LQCWkoY0qrIBfkMGymzQE,5050
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+ spacr-0.1.55.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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+ spacr-0.1.55.dist-info/entry_points.txt,sha256=BMC0ql9aNNpv8lUZ8sgDLQMsqaVnX5L535gEhKUP5ho,296
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+ spacr-0.1.55.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
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+ spacr-0.1.55.dist-info/RECORD,,
spacr-0.1.55.dist-info/entry_points.txt ADDED
@@ -0,0 +1,8 @@
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+ [console_scripts]
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+ annotate = spacr.app_annotate:gui_annotate
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+ classify = spacr.app_classify:start_classify_app
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+ make_masks = spacr.app_make_masks:gui_make_masks
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+ mask = spacr.app_mask:start_mask_app
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+ measure = spacr.app_measure:start_measure_app
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+ sim = spacr.app_sim:gui_sim
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+ spacr = spacr.gui:gui_app
spacr-0.1.16.dist-info/entry_points.txt DELETED
@@ -1,8 +0,0 @@
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- [console_scripts]
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- annotate = spacr.app_annotate:gui_annotate
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- classify = spacr.app_classify:gui_classify
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- make_masks = spacr.app_make_mask:gui_make_masks
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- mask = spacr.app_mask:gui_mask
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- measure = spacr.app_measure:gui_measure
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- sim = spacr.app_sim:gui_sim
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- spacr = spacr.gui:gui_app
{spacr-0.1.16.dist-info → spacr-0.1.55.dist-info}/WHEEL RENAMED
File without changes