spacr 0.0.71__py3-none-any.whl → 0.0.81__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (15) hide show
  1. spacr/__init__.py +4 -1
  2. spacr/__main__.py +0 -7
  3. spacr/annotate_app.py +74 -58
  4. spacr/core.py +7 -214
  5. spacr/io.py +0 -66
  6. spacr/measure.py +46 -59
  7. spacr/plot.py +117 -81
  8. spacr/sequencing.py +508 -491
  9. spacr/utils.py +469 -182
  10. {spacr-0.0.71.dist-info → spacr-0.0.81.dist-info}/METADATA +2 -1
  11. {spacr-0.0.71.dist-info → spacr-0.0.81.dist-info}/RECORD +15 -15
  12. {spacr-0.0.71.dist-info → spacr-0.0.81.dist-info}/LICENSE +0 -0
  13. {spacr-0.0.71.dist-info → spacr-0.0.81.dist-info}/WHEEL +0 -0
  14. {spacr-0.0.71.dist-info → spacr-0.0.81.dist-info}/entry_points.txt +0 -0
  15. {spacr-0.0.71.dist-info → spacr-0.0.81.dist-info}/top_level.txt +0 -0
{spacr-0.0.71.dist-info → spacr-0.0.81.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: spacr
3
- Version: 0.0.71
3
+ Version: 0.0.81
4
4
  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
5
5
  Home-page: https://github.com/EinarOlafsson/spacr
6
6
  Author: Einar Birnir Olafsson
@@ -38,6 +38,7 @@ Requires-Dist: PyWavelets <2.0,>=1.6.0
38
38
  Requires-Dist: torchcam <1.0,>=0.4.0
39
39
  Requires-Dist: ttf-opensans >=2020.10.30
40
40
  Requires-Dist: customtkinter <6.0,>=5.2.2
41
+ Requires-Dist: biopython <2.0,>=1.80
41
42
  Requires-Dist: lxml <6.0,>=5.1.0
42
43
  Provides-Extra: dev
43
44
  Requires-Dist: pytest >=3.9 ; extra == 'dev'
{spacr-0.0.71.dist-info → spacr-0.0.81.dist-info}/RECORD RENAMED
@@ -1,10 +1,10 @@
1
- spacr/__init__.py,sha256=64QJU2_IUd_40TTKQ2j239rF3PJP_gyciL_rolQOxuU,1144
2
- spacr/__main__.py,sha256=L3Dnk-YG3lULeaMxD1mS-_t89g4qWrJ7bnpBvNiQhUE,283
1
+ spacr/__init__.py,sha256=nGEiMcMkCpf8kuq5X85HJ1LbDIr9xVS0yiW81libMIQ,1190
2
+ spacr/__main__.py,sha256=bkAJJD2kjIqOP-u1kLvct9jQQCeUXzlEjdgitwi1Lm8,75
3
3
  spacr/alpha.py,sha256=Y95sLEfpK2OSYKRn3M8eUOU33JJeXfV8zhrC4KnwSTY,35244
4
- spacr/annotate_app.py,sha256=U7UfXEbXVAIdOc3X5ILEX2-3ac01JcwD-mIENdTh1q4,19478
4
+ spacr/annotate_app.py,sha256=w7t7Zilu31FSIRDKtIPae8X4MZGez3cJugFM3rOmnlQ,20617
5
5
  spacr/chris.py,sha256=YlBjSgeZaY8HPy6jkrT_ISAnCMAKVfvCxF0I9eAZLFM,2418
6
6
  spacr/cli.py,sha256=507jfOOEV8BoL4eeUcblvH-iiDHdBrEVJLu1ghAAPSc,1800
7
- spacr/core.py,sha256=nZSOV1l72eO7ubJl1geTaQGONtdadhNK3GNY7BDaFWs,166179
7
+ spacr/core.py,sha256=CHtBCYnx-oIU7f78X8QBMrVtHtaU0Dwu12zpYouUa7E,155454
8
8
  spacr/deep_spacr.py,sha256=ljIakns6q74an5QwDU7j0xoj6jRCAz-ejY0QHj9X0d8,33193
9
9
  spacr/foldseek.py,sha256=YIP1d4Ci6CeA9jSyiv-HTDbNmAmcSM9Y_DaOs7wYzLY,33546
10
10
  spacr/get_alfafold_structures.py,sha256=ehx_MQgb12k3hFecP6cYVlm5TLO8iWjgevy8ESyS3cw,3544
@@ -16,21 +16,21 @@ spacr/gui_mask_app.py,sha256=WKkAH0jv-SnfaZdJ8MkC7mkUIVSSrNE8lUfH3QBvUak,9747
16
16
  spacr/gui_measure_app.py,sha256=5vjjds5NFaOcE8XeuWDug9k-NI4jbTrwp54sJ7DNaNI,9625
17
17
  spacr/gui_sim_app.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
18
18
  spacr/gui_utils.py,sha256=JRWwmGEEVSPgs0UtZRukdNwIUJepbP675_Fvs5qocPk,49718
19
- spacr/io.py,sha256=q6KWOvoM5d9SLfu0KJA9MB2a-R_QhQ6GaprmlkV2SH8,108463
19
+ spacr/io.py,sha256=Ix0nzh-4n4f4mIayxDF6YVBAmP_mTckrueCJ81uCP7s,105040
20
20
  spacr/logger.py,sha256=7Zqr3TuuOQLWT32gYr2q1qvv7x0a2JhLANmZcnBXAW8,670
21
21
  spacr/mask_app.py,sha256=jlKmj_evveIkkyH3PYEcAshcLXN0DOPWB1oc4hAwq9E,44201
22
- spacr/measure.py,sha256=KOBmrVE9nrKwIoXG16wV1sy5nSj9EOa_FhK7i431V-A,55325
22
+ spacr/measure.py,sha256=-pR43dO1MPiwIa7zACcWyNTBpHYDyiYFV_6sTo3qqRk,54975
23
23
  spacr/old_code.py,sha256=jw67DAGoLBd7mWofVzRJSEmCI1Qrff26zIo65SEkV00,13817
24
- spacr/plot.py,sha256=9tQEDDIHzex-T90VaS_PfcHwbWfYEYfMeKkgEdlK6ko,62045
25
- spacr/sequencing.py,sha256=OiRK6gpEkuEhKoUJcU-BXWDmz4RkDxKeJCE_C6w1zJc,50503
24
+ spacr/plot.py,sha256=fnswxUXHwSLmxRpqSAmoUl5ln-_ueYPeYQlDmiYSwzQ,63299
25
+ spacr/sequencing.py,sha256=7ZJ86eDNOsvVHKCgJ-UEMzHxSOZe7q3JafsD1ePL2ps,50985
26
26
  spacr/sim.py,sha256=FveaVgBi3eypO2oVB5Dx-v0CC1Ny7UPfXkJiiRRodAk,71212
27
27
  spacr/timelapse.py,sha256=5TNmkzR_urMxy0eVB4quGdjNj2QduyiwrLL2I-udlAg,39614
28
- spacr/utils.py,sha256=1RPGvCO2bl3a0LfiJ_8bZwJVWyXKI5hv51toahSZNZE,169827
28
+ spacr/utils.py,sha256=3cA3qUNf7l_VEeuhype2kI7B5IoYK0hb6Y31Q6Si3ds,184107
29
29
  spacr/version.py,sha256=axH5tnGwtgSnJHb5IDhiu4Zjk5GhLyAEDRe-rnaoFOA,409
30
30
  spacr/models/cp/toxo_pv_lumen.CP_model,sha256=2y_CindYhmTvVwBH39SNILF3rI3x9SsRn6qrMxHy3l0,26562451
31
- spacr-0.0.71.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
32
- spacr-0.0.71.dist-info/METADATA,sha256=GjQatvU0m5kUjGeE21ylp35mbauQHinUl2tqeGWHOpA,5121
33
- spacr-0.0.71.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
34
- spacr-0.0.71.dist-info/entry_points.txt,sha256=xncHsqD9MI5wj0_p4mgZlrB8dHm_g_qF0Ggo1c78LqY,315
35
- spacr-0.0.71.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
36
- spacr-0.0.71.dist-info/RECORD,,
31
+ spacr-0.0.81.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
32
+ spacr-0.0.81.dist-info/METADATA,sha256=5m7PiZs1LpG1PL5XeVW9AFKLSaMo7N-qgoJc_Z_oIDo,5158
33
+ spacr-0.0.81.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
34
+ spacr-0.0.81.dist-info/entry_points.txt,sha256=xncHsqD9MI5wj0_p4mgZlrB8dHm_g_qF0Ggo1c78LqY,315
35
+ spacr-0.0.81.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
36
+ spacr-0.0.81.dist-info/RECORD,,
{spacr-0.0.71.dist-info → spacr-0.0.81.dist-info}/WHEEL RENAMED
File without changes