spacr 0.0.1__py3-none-any.whl

spacr/version.py

@@ -0,0 +1,19 @@
+"""
+Copyright © 2024 Something
+"""
+
+from importlib.metadata import PackageNotFoundError, version
+import sys
+from platform import python_version
+import torch
+
+try:
+    version = version("spacr")
+except PackageNotFoundError:
+    version = "unknown"
+
+version_str = f"""
+spacr version: \t{version} 
+platform:       \t{sys.platform} 
+python version: \t{python_version()} 
+torch version:  \t{torch.__version__}"""

spacr-0.0.1.dist-info/LICENSE

@@ -0,0 +1,21 @@
+The MIT License (MIT)
+
+Copyright (c) <year> Adam Veldhousen
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

spacr-0.0.1.dist-info/METADATA

@@ -0,0 +1,64 @@
+Metadata-Version: 2.1
+Name: spacr
+Version: 0.0.1
+Summary: A brief description of your package
+Home-page: https://github.com/EinarOlafsson/spacr
+Author: Einar Birnir Olafsson
+Author-email: olafsson@med.umich.com
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+License-File: LICENSE
+Requires-Dist: torch
+Requires-Dist: torchvision
+Requires-Dist: numpy
+Requires-Dist: pandas
+Requires-Dist: statsmodels
+Requires-Dist: scikit-image
+Requires-Dist: scikit-learn
+Requires-Dist: seaborn
+Requires-Dist: matplotlib
+Requires-Dist: pillow
+Requires-Dist: imageio
+Requires-Dist: scipy
+Requires-Dist: ipywidgets
+Requires-Dist: mahotas
+Requires-Dist: btrack
+Requires-Dist: trackpy
+Requires-Dist: cellpose
+Requires-Dist: IPython
+Requires-Dist: opencv-python-headless
+Requires-Dist: umap
+Requires-Dist: ttkthemes
+Provides-Extra: dev
+Requires-Dist: pytest >=3.9 ; extra == 'dev'
+Provides-Extra: full
+Requires-Dist: opencv-python ; extra == 'full'
+Provides-Extra: headless
+Requires-Dist: opencv-python-headless ; extra == 'headless'
+
+# SPACR
+
+Morphological processing toolset
+
+## Installation
+
+Tkinter is need to run
+
+### Ubuntu
+
+`apt-get install pyton3-tk`
+
+
+## Running
+
+### Measuring 
+
+`measure_gui`
+
+pass `path/to/tif/images`
+
+```
+code
+block
+```

spacr-0.0.1.dist-info/RECORD

@@ -0,0 +1,26 @@
+spacr/__init__.py,sha256=l31dOqsItFjCkgSLu8SuehjjnQ1KQhBkYSyxtXVYJyA,769
+spacr/__main__.py,sha256=_qRkhbFrH_cXr7AZs6KHL8Hh4VApqNdpNCtiKn2ePTo,285
+spacr/annotate_app.py,sha256=IPgZfS4TrSqbJr81P1FWUNOgCPPcS6EdQjUsXRwY-4E,19932
+spacr/cli.py,sha256=wIFnKxz5rXRR6o1XMeTZ7nE9UO_-veRbDbr951Vqp5o,10629
+spacr/core.py,sha256=r-i3EwmFXnLDidxmkWTs5-RwGZ-wy4IcnKJF5ntYf-M,109296
+spacr/gui_mask_app.py,sha256=vNSfYQm0bhYIJ4LpdLMKscBVaSZtPbJ2txhNsiuXL3Y,9737
+spacr/gui_measure_app.py,sha256=sR8bi9aQwYvZC1u-4J8E4SPUG9nP_3RMJ5dWf41DYp8,8502
+spacr/gui_utils.py,sha256=4Jsy4uNSZKaFRAxRw4ohaHYFvx6QXn_3nXyD-JBGs_w,21218
+spacr/io.py,sha256=LfOqy5ypqjoaRtTyUyxbepBKQnp185C5Cy8A2qb9Cv0,95569
+spacr/logger.py,sha256=7Zqr3TuuOQLWT32gYr2q1qvv7x0a2JhLANmZcnBXAW8,670
+spacr/mask_app.py,sha256=B6-zYXVFg-cc58gLcz-Ry6LClO2jxLitL6B2ACb0HTw,39278
+spacr/measure.py,sha256=WFaPOysbCVM5f48NbBjBJj5JR-hZOWi4iFpai350Cqs,51366
+spacr/old_code.py,sha256=dbgDULLqhDQhB7ASWJZk3W9pm2MSA-8t-IR-mn70-mw,3280
+spacr/plot.py,sha256=KNLwQP-toD8uyivLZsJ-70ie9QXO3omlkNyyhQ09RmY,54500
+spacr/sim.py,sha256=jqIp-tmqH5UT-1oNQ-6_QqnTipUEsd638NRhfrgcILk,51390
+spacr/timelapse.py,sha256=_j6cSVaxOhM7mTfJuNNRKogJaIGz_fM92MIegE6Ykh0,25355
+spacr/train.py,sha256=fUvh6BMwwmodSGZGUzL420leXOQW2k4WOKB_wwlwSM4,25361
+spacr/umap.py,sha256=4QSrQ16Og-Ijq-SwguMQT2f20UWz1LE5HQeSLmzSl8c,29370
+spacr/utils.py,sha256=g_I2IdxCtaNDownnnYnQ0114XaL2zSjBKeeQOHpY3v8,116770
+spacr/version.py,sha256=axH5tnGwtgSnJHb5IDhiu4Zjk5GhLyAEDRe-rnaoFOA,409
+spacr-0.0.1.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
+spacr-0.0.1.dist-info/METADATA,sha256=2eEdG7LBuM11Qo5-AQ1Oq7uCdk00EBAQQAmR0NZQIDs,1326
+spacr-0.0.1.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+spacr-0.0.1.dist-info/entry_points.txt,sha256=WgVTXZSjmP1ZnQ1h4mdMldCJr_a8pWW8iB1SJ1J2PJ0,203
+spacr-0.0.1.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
+spacr-0.0.1.dist-info/RECORD,,

spacr-0.0.1.dist-info/WHEEL

@@ -0,0 +1,5 @@
+Wheel-Version: 1.0
+Generator: bdist_wheel (0.42.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

spacr-0.0.1.dist-info/entry_points.txt

@@ -0,0 +1,5 @@
+[console_scripts]
+gui_annotation = spacr.annotate_app:gui_annotation
+gui_make_masks = spacr.mask_app:gui_make_masks
+gui_mask = spacr.gui_mask_app:gui_mask
+gui_measure = spacr.gui_measure_app:gui_measure

spacr-0.0.1.dist-info/top_level.txt

@@ -0,0 +1 @@
+spacr