snplib 1.0.9__py3-none-any.whl → 1.1.10__py3-none-any.whl

snplib/finalreport/_finalreport.py

@@ -7,11 +7,15 @@ from pathlib import Path
 from functools import reduce
 
 import re
+
+from numpy import nan
 import pandas as pd
 
 
 class FinalReport(object):
-	""" File that contains SNP information.
+	""" File that contains SNP information. File processing is triggered by the
+	handle method. If values in 'SID' or 'UNIQ_KEY' were missing in the xlsx
+	conversion file, the processed data will contain NAN values.
 
 	:argument allele: A variant form of a single nucleotide polymorphism
 		(SNP), a specific polymorphic site or a whole gene detectable at
@@ -235,17 +239,15 @@ class FinalReport(object):
 		if self._check_on_ru_symbols(self._map_rn.UNIQ_KEY):
 			raise Exception("Error. Unique keys contain Cyrillic alphabet.")
 
-		if self._map_rn.UNIQ_KEY.isna().any():
-			self._map_rn.fillna('unknown', inplace=True)
-
 	@staticmethod
 	def _check_on_ru_symbols(seq: pd.Series) -> bool | None:
-		"""
+		""" Checial verification of the Cyrillic
 
-		:param seq:
-		:return:
+		:param seq: Squeezed for verification.
+		:return: Truth if there are no symbols of Cyril and there is a lie if
+			there is.
 		"""
 
-		return any(seq.apply(lambda x: bool(re.search('[а-яА-Я]', x))))
-
-
+		return seq.apply(
+			lambda x: bool(re.search('[а-яА-Я]', x)) if x is not nan else x
+		).any()

{snplib-1.0.9.dist-info → snplib-1.1.10.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: snplib
-Version: 1.0.9
+Version: 1.1.10
 Summary: Snptools is a tool for Single Nucleotide Polymorphism (SNP) data processing
 Author-email: Igor <igor.loschinin@gmail.com>
 License: GNU
@@ -10,14 +10,14 @@ Classifier: Operating System :: OS Independent
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: numpy>=1.26.1
-Requires-Dist: pandas>=2.1.1
-Requires-Dist: six>=1.16.0
+Requires-Dist: numpy>=2.2.3
+Requires-Dist: pandas>=2.2.3
+Requires-Dist: six>=1.17.0
 Requires-Dist: swifter>=1.4.0
 Requires-Dist: xlrd>=2.0.1
-Requires-Dist: XlsxWriter>=3.1.9
-Requires-Dist: openpyxl>=3.1.2
-Requires-Dist: pydantic>=2.4.2
+Requires-Dist: XlsxWriter>=3.2.2
+Requires-Dist: openpyxl>=3.1.5
+Requires-Dist: pydantic>=2.10.6
 
 # snptools
 <p align="center">
@@ -73,7 +73,7 @@ from snplib import (
 ```
 
 ## Documentation
-Detailed documentation on how to use SNPTools is available see the [docs](docs/_build/index.html).
+Detailed documentation on how to use SNPTools is available see the [docs](https://snptools.readthedocs.io/en/latest/).
 
 ## License
 This project is licensed under the GNU General Public License - see the 

{snplib-1.0.9.dist-info → snplib-1.1.10.dist-info}/RECORD

@@ -1,6 +1,6 @@
 snplib/__init__.py,sha256=xhjj4ZywdwCq91GBh1zfBP_TwFW26-KpHcCUUVvMdgI,196
 snplib/finalreport/__init__.py,sha256=Yk49x8t-STIfsdP6QLMtaGm1gTj_n-XS8kchPguvW1g,161
-snplib/finalreport/_finalreport.py,sha256=el_d8MVmpic3wKCRJ-J52VZYSmMuNSf4p_tmPkgh0Z0,5876
+snplib/finalreport/_finalreport.py,sha256=dE44NsJ5ciGyFCh2LpFncf4LwQDI_-l4LatOPg879Sk,6148
 snplib/format/__init__.py,sha256=3W_l_sP1u9HV3HWwnsJxPGw9anrVknstqLaJmWQaG0k,261
 snplib/format/__settings.py,sha256=kyAVZ4tiU61sNr3jQhjXbLXRyBA3pjFfCw3fOfSkY14,289
 snplib/format/_plink.py,sha256=cjT6PkvDJr8KwvQo76i7_Hm1Og4bASYCDN9G7CHsQ00,10372
@@ -15,8 +15,8 @@ snplib/statistics/__init__.py,sha256=XJFU7mEwAJJ2M187jEkO8rFNYKoxF-g9KF_stS7eFFw
 snplib/statistics/_callrate.py,sha256=yfHxnNVpcDfV3qxZVwrk2RWPgy9dTf7NHWczDUORwtY,1866
 snplib/statistics/_freq.py,sha256=ZPZBZM3xq9EseOxuMzRVvzkjjFfaaA4ZvF7XI8ctON0,1623
 snplib/statistics/_snphwe.py,sha256=KcoRGwovMCc53-GJ8VfYs_3ZEHObgt8B0EvrW5nFnmM,3353
-snplib-1.0.9.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-snplib-1.0.9.dist-info/METADATA,sha256=tgDJRi81nc66_LSZtTTkvPENK6r9OZ6WKf_MGPk7hcg,2163
-snplib-1.0.9.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
-snplib-1.0.9.dist-info/top_level.txt,sha256=CGCrLXuCSyXPCTwMFQjPxQR7b93FFFft56sAPPun_2g,7
-snplib-1.0.9.dist-info/RECORD,,
+snplib-1.1.10.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+snplib-1.1.10.dist-info/METADATA,sha256=hmE1zLFNhDwwbl03PVupafM1n-NGOV2yKYmKzi1a6lw,2184
+snplib-1.1.10.dist-info/WHEEL,sha256=nn6H5-ilmfVryoAQl3ZQ2l8SH5imPWFpm1A5FgEuFV4,91
+snplib-1.1.10.dist-info/top_level.txt,sha256=CGCrLXuCSyXPCTwMFQjPxQR7b93FFFft56sAPPun_2g,7
+snplib-1.1.10.dist-info/RECORD,,

{snplib-1.0.9.dist-info → snplib-1.1.10.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.8.0)
+Generator: setuptools (75.8.1)
 Root-Is-Purelib: true
 Tag: py3-none-any