snplib 1.0.10__py3-none-any.whl → 1.1.10__py3-none-any.whl

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Files changed (6) hide show
  1. snplib/finalreport/_finalreport.py +12 -10
  2. {snplib-1.0.10.dist-info → snplib-1.1.10.dist-info}/METADATA +7 -7
  3. {snplib-1.0.10.dist-info → snplib-1.1.10.dist-info}/RECORD +6 -6
  4. {snplib-1.0.10.dist-info → snplib-1.1.10.dist-info}/WHEEL +1 -1
  5. {snplib-1.0.10.dist-info → snplib-1.1.10.dist-info}/LICENSE +0 -0
  6. {snplib-1.0.10.dist-info → snplib-1.1.10.dist-info}/top_level.txt +0 -0
snplib/finalreport/_finalreport.py CHANGED
@@ -7,11 +7,15 @@ from pathlib import Path
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  from functools import reduce
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  import re
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+
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+ from numpy import nan
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  import pandas as pd
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  class FinalReport(object):
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- """ File that contains SNP information.
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+ """ File that contains SNP information. File processing is triggered by the
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+ handle method. If values in 'SID' or 'UNIQ_KEY' were missing in the xlsx
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+ conversion file, the processed data will contain NAN values.
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  :argument allele: A variant form of a single nucleotide polymorphism
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  (SNP), a specific polymorphic site or a whole gene detectable at
@@ -235,17 +239,15 @@ class FinalReport(object):
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  if self._check_on_ru_symbols(self._map_rn.UNIQ_KEY):
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  raise Exception("Error. Unique keys contain Cyrillic alphabet.")
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- if self._map_rn.UNIQ_KEY.isna().any():
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- self._map_rn.fillna('unknown', inplace=True)
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-
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  @staticmethod
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  def _check_on_ru_symbols(seq: pd.Series) -> bool | None:
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- """
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+ """ Checial verification of the Cyrillic
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- :param seq:
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- :return:
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+ :param seq: Squeezed for verification.
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+ :return: Truth if there are no symbols of Cyril and there is a lie if
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+ there is.
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  """
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- return any(seq.apply(lambda x: bool(re.search('[а-яА-Я]', x))))
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-
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-
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+ return seq.apply(
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+ lambda x: bool(re.search('[а-яА-Я]', x)) if x is not nan else x
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+ ).any()
{snplib-1.0.10.dist-info → snplib-1.1.10.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: snplib
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- Version: 1.0.10
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+ Version: 1.1.10
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  Summary: Snptools is a tool for Single Nucleotide Polymorphism (SNP) data processing
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  Author-email: Igor <igor.loschinin@gmail.com>
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  License: GNU
@@ -10,14 +10,14 @@ Classifier: Operating System :: OS Independent
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  Requires-Python: >=3.10
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: numpy>=1.26.1
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- Requires-Dist: pandas>=2.1.1
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- Requires-Dist: six>=1.16.0
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+ Requires-Dist: numpy>=2.2.3
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+ Requires-Dist: pandas>=2.2.3
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+ Requires-Dist: six>=1.17.0
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  Requires-Dist: swifter>=1.4.0
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  Requires-Dist: xlrd>=2.0.1
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- Requires-Dist: XlsxWriter>=3.1.9
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- Requires-Dist: openpyxl>=3.1.2
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- Requires-Dist: pydantic>=2.4.2
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+ Requires-Dist: XlsxWriter>=3.2.2
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+ Requires-Dist: openpyxl>=3.1.5
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+ Requires-Dist: pydantic>=2.10.6
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  # snptools
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  <p align="center">
{snplib-1.0.10.dist-info → snplib-1.1.10.dist-info}/RECORD RENAMED
@@ -1,6 +1,6 @@
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  snplib/__init__.py,sha256=xhjj4ZywdwCq91GBh1zfBP_TwFW26-KpHcCUUVvMdgI,196
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  snplib/finalreport/__init__.py,sha256=Yk49x8t-STIfsdP6QLMtaGm1gTj_n-XS8kchPguvW1g,161
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- snplib/finalreport/_finalreport.py,sha256=el_d8MVmpic3wKCRJ-J52VZYSmMuNSf4p_tmPkgh0Z0,5876
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+ snplib/finalreport/_finalreport.py,sha256=dE44NsJ5ciGyFCh2LpFncf4LwQDI_-l4LatOPg879Sk,6148
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  snplib/format/__init__.py,sha256=3W_l_sP1u9HV3HWwnsJxPGw9anrVknstqLaJmWQaG0k,261
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  snplib/format/__settings.py,sha256=kyAVZ4tiU61sNr3jQhjXbLXRyBA3pjFfCw3fOfSkY14,289
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  snplib/format/_plink.py,sha256=cjT6PkvDJr8KwvQo76i7_Hm1Og4bASYCDN9G7CHsQ00,10372
@@ -15,8 +15,8 @@ snplib/statistics/__init__.py,sha256=XJFU7mEwAJJ2M187jEkO8rFNYKoxF-g9KF_stS7eFFw
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  snplib/statistics/_callrate.py,sha256=yfHxnNVpcDfV3qxZVwrk2RWPgy9dTf7NHWczDUORwtY,1866
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  snplib/statistics/_freq.py,sha256=ZPZBZM3xq9EseOxuMzRVvzkjjFfaaA4ZvF7XI8ctON0,1623
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  snplib/statistics/_snphwe.py,sha256=KcoRGwovMCc53-GJ8VfYs_3ZEHObgt8B0EvrW5nFnmM,3353
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- snplib-1.0.10.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- snplib-1.0.10.dist-info/METADATA,sha256=pKp9XmfbbogkNsdC_SEpsx1hLTdFxWaD9YgrIq7j0e4,2184
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- snplib-1.0.10.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
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- snplib-1.0.10.dist-info/top_level.txt,sha256=CGCrLXuCSyXPCTwMFQjPxQR7b93FFFft56sAPPun_2g,7
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- snplib-1.0.10.dist-info/RECORD,,
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+ snplib-1.1.10.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ snplib-1.1.10.dist-info/METADATA,sha256=hmE1zLFNhDwwbl03PVupafM1n-NGOV2yKYmKzi1a6lw,2184
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+ snplib-1.1.10.dist-info/WHEEL,sha256=nn6H5-ilmfVryoAQl3ZQ2l8SH5imPWFpm1A5FgEuFV4,91
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+ snplib-1.1.10.dist-info/top_level.txt,sha256=CGCrLXuCSyXPCTwMFQjPxQR7b93FFFft56sAPPun_2g,7
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+ snplib-1.1.10.dist-info/RECORD,,
{snplib-1.0.10.dist-info → snplib-1.1.10.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (75.8.0)
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+ Generator: setuptools (75.8.1)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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