snappy 3.1__cp311-cp311-macosx_11_0_arm64.whl → 3.2__cp311-cp311-macosx_11_0_arm64.whl

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  1. snappy/CyOpenGL.cpython-311-darwin.so +0 -0
  2. snappy/SnapPy.cpython-311-darwin.so +0 -0
  3. snappy/SnapPyHP.cpython-311-darwin.so +0 -0
  4. snappy/__init__.py +299 -402
  5. snappy/app.py +70 -20
  6. snappy/browser.py +18 -17
  7. snappy/canonical.py +249 -0
  8. snappy/{verify/cusp_shapes.py → cusps/__init__.py} +8 -18
  9. snappy/cusps/cusp_area_matrix.py +101 -0
  10. snappy/{verify/cusp_areas.py → cusps/cusp_areas_from_matrix.py} +23 -39
  11. snappy/cusps/maximal_cusp_area_matrix.py +136 -0
  12. snappy/cusps/test.py +21 -0
  13. snappy/cusps/trig_cusp_area_matrix.py +63 -0
  14. snappy/database.py +10 -9
  15. snappy/decorated_isosig.py +337 -114
  16. snappy/dev/extended_ptolemy/complexVolumesClosed.py +40 -7
  17. snappy/dev/extended_ptolemy/extended.py +3 -3
  18. snappy/dev/extended_ptolemy/phc_wrapper.py +10 -10
  19. snappy/dev/vericlosed/oneVertexTruncatedComplex.py +1 -1
  20. snappy/doc/_images/m004_paper_plane_on_systole.jpg +0 -0
  21. snappy/doc/_images/m125_paper_plane.jpg +0 -0
  22. snappy/doc/_images/o9_00000_systole_paper_plane.jpg +0 -0
  23. snappy/doc/_images/o9_00000_systole_paper_plane_closer.jpg +0 -0
  24. snappy/doc/_sources/credits.rst.txt +6 -1
  25. snappy/doc/_sources/development.rst.txt +66 -46
  26. snappy/doc/_sources/index.rst.txt +72 -5
  27. snappy/doc/_sources/installing.rst.txt +145 -162
  28. snappy/doc/_sources/news.rst.txt +73 -1
  29. snappy/doc/_sources/ptolemy_examples1.rst.txt +8 -7
  30. snappy/doc/_sources/ptolemy_examples3.rst.txt +2 -2
  31. snappy/doc/_sources/triangulation.rst.txt +2 -2
  32. snappy/doc/_sources/verify.rst.txt +89 -29
  33. snappy/doc/_sources/verify_internals.rst.txt +5 -16
  34. snappy/doc/_static/basic.css +23 -1
  35. snappy/doc/_static/css/badge_only.css +1 -1
  36. snappy/doc/_static/css/theme.css +1 -1
  37. snappy/doc/_static/doctools.js +1 -1
  38. snappy/doc/_static/documentation_options.js +2 -3
  39. snappy/doc/_static/fonts/Lato/lato-bold.eot +0 -0
  40. snappy/doc/_static/fonts/Lato/lato-bold.ttf +0 -0
  41. snappy/doc/_static/fonts/Lato/lato-bold.woff +0 -0
  42. snappy/doc/_static/fonts/Lato/lato-bold.woff2 +0 -0
  43. snappy/doc/_static/fonts/Lato/lato-bolditalic.eot +0 -0
  44. snappy/doc/_static/fonts/Lato/lato-bolditalic.ttf +0 -0
  45. snappy/doc/_static/fonts/Lato/lato-bolditalic.woff +0 -0
  46. snappy/doc/_static/fonts/Lato/lato-bolditalic.woff2 +0 -0
  47. snappy/doc/_static/fonts/Lato/lato-italic.eot +0 -0
  48. snappy/doc/_static/fonts/Lato/lato-italic.ttf +0 -0
  49. snappy/doc/_static/fonts/Lato/lato-italic.woff +0 -0
  50. snappy/doc/_static/fonts/Lato/lato-italic.woff2 +0 -0
  51. snappy/doc/_static/fonts/Lato/lato-regular.eot +0 -0
  52. snappy/doc/_static/fonts/Lato/lato-regular.ttf +0 -0
  53. snappy/doc/_static/fonts/Lato/lato-regular.woff +0 -0
  54. snappy/doc/_static/fonts/Lato/lato-regular.woff2 +0 -0
  55. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot +0 -0
  56. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf +0 -0
  57. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff +0 -0
  58. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 +0 -0
  59. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot +0 -0
  60. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf +0 -0
  61. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff +0 -0
  62. snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 +0 -0
  63. snappy/doc/_static/js/versions.js +228 -0
  64. snappy/doc/_static/language_data.js +2 -2
  65. snappy/doc/_static/pygments.css +1 -0
  66. snappy/doc/_static/searchtools.js +125 -71
  67. snappy/doc/_static/sphinx_highlight.js +13 -3
  68. snappy/doc/additional_classes.html +291 -122
  69. snappy/doc/bugs.html +17 -20
  70. snappy/doc/censuses.html +34 -53
  71. snappy/doc/credits.html +22 -22
  72. snappy/doc/development.html +88 -68
  73. snappy/doc/genindex.html +66 -145
  74. snappy/doc/index.html +86 -31
  75. snappy/doc/installing.html +164 -182
  76. snappy/doc/manifold.html +1168 -556
  77. snappy/doc/manifoldhp.html +18 -21
  78. snappy/doc/news.html +91 -33
  79. snappy/doc/objects.inv +0 -0
  80. snappy/doc/other.html +20 -22
  81. snappy/doc/platonic_census.html +31 -34
  82. snappy/doc/plink.html +19 -22
  83. snappy/doc/ptolemy.html +20 -22
  84. snappy/doc/ptolemy_classes.html +102 -105
  85. snappy/doc/ptolemy_examples1.html +34 -36
  86. snappy/doc/ptolemy_examples2.html +28 -31
  87. snappy/doc/ptolemy_examples3.html +26 -29
  88. snappy/doc/ptolemy_examples4.html +20 -23
  89. snappy/doc/ptolemy_prelim.html +25 -28
  90. snappy/doc/py-modindex.html +16 -19
  91. snappy/doc/screenshots.html +22 -24
  92. snappy/doc/search.html +15 -18
  93. snappy/doc/searchindex.js +1 -1
  94. snappy/doc/snap.html +18 -21
  95. snappy/doc/snappy.html +18 -20
  96. snappy/doc/spherogram.html +84 -87
  97. snappy/doc/todo.html +17 -20
  98. snappy/doc/triangulation.html +324 -215
  99. snappy/doc/tutorial.html +17 -20
  100. snappy/doc/verify.html +100 -46
  101. snappy/doc/verify_internals.html +106 -563
  102. snappy/drilling/__init__.py +153 -235
  103. snappy/drilling/barycentric.py +103 -0
  104. snappy/drilling/constants.py +0 -2
  105. snappy/drilling/crush.py +56 -130
  106. snappy/drilling/cusps.py +12 -6
  107. snappy/drilling/debug.py +2 -1
  108. snappy/drilling/exceptions.py +7 -40
  109. snappy/drilling/moves.py +302 -243
  110. snappy/drilling/perturb.py +63 -37
  111. snappy/drilling/shorten.py +36 -0
  112. snappy/drilling/subdivide.py +0 -5
  113. snappy/drilling/test.py +23 -0
  114. snappy/drilling/test_cases.py +126 -0
  115. snappy/drilling/tracing.py +9 -37
  116. snappy/exceptions.py +18 -5
  117. snappy/exterior_to_link/barycentric_geometry.py +2 -4
  118. snappy/exterior_to_link/main.py +8 -7
  119. snappy/exterior_to_link/mcomplex_with_link.py +2 -2
  120. snappy/exterior_to_link/rational_linear_algebra.py +1 -1
  121. snappy/exterior_to_link/rational_linear_algebra_wrapped.py +1 -1
  122. snappy/exterior_to_link/test.py +21 -33
  123. snappy/geometric_structure/__init__.py +212 -0
  124. snappy/geometric_structure/cusp_neighborhood/__init__.py +3 -0
  125. snappy/geometric_structure/cusp_neighborhood/complex_cusp_cross_section.py +697 -0
  126. snappy/geometric_structure/cusp_neighborhood/cusp_cross_section_base.py +484 -0
  127. snappy/geometric_structure/cusp_neighborhood/exceptions.py +42 -0
  128. snappy/geometric_structure/cusp_neighborhood/real_cusp_cross_section.py +298 -0
  129. snappy/geometric_structure/cusp_neighborhood/tiles_for_cusp_neighborhood.py +159 -0
  130. snappy/geometric_structure/cusp_neighborhood/vertices.py +32 -0
  131. snappy/geometric_structure/geodesic/__init__.py +0 -0
  132. snappy/geometric_structure/geodesic/add_core_curves.py +152 -0
  133. snappy/geometric_structure/geodesic/avoid_core_curves.py +369 -0
  134. snappy/geometric_structure/geodesic/canonical_keys.py +52 -0
  135. snappy/geometric_structure/geodesic/check_away_from_core_curve.py +60 -0
  136. snappy/geometric_structure/geodesic/constants.py +6 -0
  137. snappy/geometric_structure/geodesic/exceptions.py +22 -0
  138. snappy/{drilling → geometric_structure/geodesic}/fixed_points.py +34 -9
  139. snappy/{drilling/geodesic_info.py → geometric_structure/geodesic/geodesic_start_point_info.py} +139 -180
  140. snappy/geometric_structure/geodesic/graph_trace_helper.py +67 -0
  141. snappy/geometric_structure/geodesic/line.py +30 -0
  142. snappy/geometric_structure/geodesic/multiplicity.py +127 -0
  143. snappy/geometric_structure/geodesic/tiles_for_geodesic.py +101 -0
  144. snappy/geometric_structure/test.py +22 -0
  145. snappy/gui.py +23 -13
  146. snappy/horoviewer.py +7 -7
  147. snappy/hyperboloid/__init__.py +96 -31
  148. snappy/hyperboloid/distances.py +245 -0
  149. snappy/hyperboloid/horoball.py +19 -0
  150. snappy/hyperboloid/line.py +35 -0
  151. snappy/hyperboloid/point.py +9 -0
  152. snappy/hyperboloid/triangle.py +29 -0
  153. snappy/isometry_signature.py +382 -0
  154. snappy/len_spec/__init__.py +596 -0
  155. snappy/len_spec/geodesic_info.py +110 -0
  156. snappy/len_spec/geodesic_key_info_dict.py +117 -0
  157. snappy/len_spec/geodesic_piece.py +143 -0
  158. snappy/len_spec/geometric_structure.py +182 -0
  159. snappy/len_spec/geometry.py +80 -0
  160. snappy/len_spec/length_spectrum_geodesic_info.py +170 -0
  161. snappy/len_spec/spine.py +206 -0
  162. snappy/len_spec/test.py +24 -0
  163. snappy/len_spec/test_cases.py +69 -0
  164. snappy/len_spec/tile.py +275 -0
  165. snappy/len_spec/word.py +86 -0
  166. snappy/math_basics.py +39 -13
  167. snappy/matrix.py +52 -9
  168. snappy/number.py +12 -6
  169. snappy/numeric_output_checker.py +2 -3
  170. snappy/pari.py +8 -4
  171. snappy/phone_home.py +2 -1
  172. snappy/polyviewer.py +8 -8
  173. snappy/ptolemy/__init__.py +1 -1
  174. snappy/ptolemy/component.py +2 -2
  175. snappy/ptolemy/coordinates.py +25 -25
  176. snappy/ptolemy/findLoops.py +9 -9
  177. snappy/ptolemy/manifoldMethods.py +27 -29
  178. snappy/ptolemy/polynomial.py +50 -57
  179. snappy/ptolemy/processFileBase.py +60 -0
  180. snappy/ptolemy/ptolemyVariety.py +109 -41
  181. snappy/ptolemy/reginaWrapper.py +4 -4
  182. snappy/ptolemy/rur.py +1 -1
  183. snappy/ptolemy/solutionsToPrimeIdealGroebnerBasis.py +9 -9
  184. snappy/ptolemy/test.py +99 -54
  185. snappy/ptolemy/utilities.py +1 -1
  186. snappy/raytracing/__init__.py +64 -0
  187. snappy/raytracing/additional_horospheres.py +64 -0
  188. snappy/raytracing/additional_len_spec_choices.py +63 -0
  189. snappy/raytracing/cohomology_fractal.py +0 -3
  190. snappy/raytracing/eyeball.py +123 -0
  191. snappy/raytracing/finite_raytracing_data.py +17 -17
  192. snappy/raytracing/finite_viewer.py +15 -15
  193. snappy/raytracing/geodesic_tube_info.py +93 -63
  194. snappy/raytracing/geodesics.py +94 -64
  195. snappy/raytracing/geodesics_window.py +56 -34
  196. snappy/raytracing/gui_utilities.py +21 -6
  197. snappy/raytracing/hyperboloid_navigation.py +29 -4
  198. snappy/raytracing/hyperboloid_utilities.py +73 -73
  199. snappy/raytracing/ideal_raytracing_data.py +121 -91
  200. snappy/raytracing/inside_viewer.py +199 -66
  201. snappy/raytracing/pack.py +22 -0
  202. snappy/raytracing/raytracing_data.py +37 -25
  203. snappy/raytracing/raytracing_view.py +70 -65
  204. snappy/raytracing/shaders/Eye.png +0 -0
  205. snappy/raytracing/shaders/NonGeometric.png +0 -0
  206. snappy/raytracing/shaders/__init__.py +39 -3
  207. snappy/raytracing/shaders/fragment.glsl +451 -133
  208. snappy/raytracing/test.py +29 -0
  209. snappy/raytracing/tooltip.py +146 -0
  210. snappy/raytracing/upper_halfspace_utilities.py +42 -9
  211. snappy/sage_helper.py +67 -134
  212. snappy/settings.py +90 -77
  213. snappy/shell.py +2 -0
  214. snappy/snap/character_varieties.py +2 -2
  215. snappy/snap/find_field.py +4 -3
  216. snappy/snap/fundamental_polyhedron.py +2 -2
  217. snappy/snap/kernel_structures.py +5 -1
  218. snappy/snap/nsagetools.py +9 -8
  219. snappy/snap/peripheral/dual_cellulation.py +4 -3
  220. snappy/snap/peripheral/peripheral.py +2 -2
  221. snappy/snap/peripheral/surface.py +5 -5
  222. snappy/snap/peripheral/test.py +1 -1
  223. snappy/snap/polished_reps.py +8 -8
  224. snappy/snap/slice_obs_HKL.py +16 -14
  225. snappy/snap/t3mlite/arrow.py +3 -3
  226. snappy/snap/t3mlite/edge.py +3 -3
  227. snappy/snap/t3mlite/homology.py +2 -2
  228. snappy/snap/t3mlite/mcomplex.py +3 -3
  229. snappy/snap/t3mlite/simplex.py +12 -0
  230. snappy/snap/t3mlite/spun.py +18 -17
  231. snappy/snap/t3mlite/test_vs_regina.py +4 -4
  232. snappy/snap/test.py +37 -53
  233. snappy/snap/utilities.py +4 -5
  234. snappy/test.py +121 -138
  235. snappy/test_cases.py +263 -0
  236. snappy/testing.py +131 -0
  237. snappy/tiling/__init__.py +2 -0
  238. snappy/tiling/canonical_key_dict.py +59 -0
  239. snappy/tiling/dict_based_set.py +79 -0
  240. snappy/tiling/floor.py +49 -0
  241. snappy/tiling/hyperboloid_dict.py +54 -0
  242. snappy/tiling/iter_utils.py +78 -0
  243. snappy/tiling/lifted_tetrahedron.py +22 -0
  244. snappy/tiling/lifted_tetrahedron_set.py +54 -0
  245. snappy/tiling/real_hash_dict.py +164 -0
  246. snappy/tiling/test.py +23 -0
  247. snappy/tiling/tile.py +215 -0
  248. snappy/tiling/triangle.py +33 -0
  249. snappy/tkterminal.py +116 -86
  250. snappy/twister/main.py +1 -7
  251. snappy/twister/twister_core.cpython-311-darwin.so +0 -0
  252. snappy/upper_halfspace/__init__.py +78 -17
  253. snappy/verify/__init__.py +3 -7
  254. snappy/verify/{verifyCanonical.py → canonical.py} +78 -70
  255. snappy/verify/complex_volume/adjust_torsion.py +1 -2
  256. snappy/verify/complex_volume/closed.py +13 -13
  257. snappy/verify/complex_volume/cusped.py +6 -6
  258. snappy/verify/complex_volume/extended_bloch.py +5 -8
  259. snappy/verify/{cuspTranslations.py → cusp_translations.py} +1 -1
  260. snappy/verify/edge_equations.py +80 -0
  261. snappy/verify/exceptions.py +0 -55
  262. snappy/verify/{verifyHyperbolicity.py → hyperbolicity.py} +3 -3
  263. snappy/verify/interval_newton_shapes_engine.py +7 -5
  264. snappy/verify/interval_tree.py +5 -5
  265. snappy/verify/krawczyk_shapes_engine.py +17 -18
  266. snappy/verify/maximal_cusp_area_matrix/__init__.py +7 -74
  267. snappy/verify/maximal_cusp_area_matrix/cusp_tiling_engine.py +3 -4
  268. snappy/verify/maximal_cusp_area_matrix/cusp_translate_engine.py +1 -1
  269. snappy/verify/{realAlgebra.py → real_algebra.py} +1 -1
  270. snappy/verify/shapes.py +5 -3
  271. snappy/verify/short_slopes.py +39 -41
  272. snappy/verify/{squareExtensions.py → square_extensions.py} +14 -11
  273. snappy/verify/test.py +57 -60
  274. snappy/verify/upper_halfspace/extended_matrix.py +1 -1
  275. snappy/verify/upper_halfspace/finite_point.py +3 -4
  276. snappy/verify/upper_halfspace/ideal_point.py +9 -9
  277. snappy/verify/volume.py +2 -2
  278. snappy/version.py +2 -2
  279. {snappy-3.1.dist-info → snappy-3.2.dist-info}/METADATA +26 -11
  280. snappy-3.2.dist-info/RECORD +503 -0
  281. {snappy-3.1.dist-info → snappy-3.2.dist-info}/WHEEL +1 -1
  282. {snappy-3.1.dist-info → snappy-3.2.dist-info}/top_level.txt +6 -1
  283. snappy/__pycache__/__init__.cpython-311.pyc +0 -0
  284. snappy/__pycache__/browser.cpython-311.pyc +0 -0
  285. snappy/__pycache__/cache.cpython-311.pyc +0 -0
  286. snappy/__pycache__/database.cpython-311.pyc +0 -0
  287. snappy/__pycache__/db_utilities.cpython-311.pyc +0 -0
  288. snappy/__pycache__/decorated_isosig.cpython-311.pyc +0 -0
  289. snappy/__pycache__/exceptions.cpython-311.pyc +0 -0
  290. snappy/__pycache__/export_stl.cpython-311.pyc +0 -0
  291. snappy/__pycache__/filedialog.cpython-311.pyc +0 -0
  292. snappy/__pycache__/gui.cpython-311.pyc +0 -0
  293. snappy/__pycache__/horoviewer.cpython-311.pyc +0 -0
  294. snappy/__pycache__/infowindow.cpython-311.pyc +0 -0
  295. snappy/__pycache__/math_basics.cpython-311.pyc +0 -0
  296. snappy/__pycache__/matrix.cpython-311.pyc +0 -0
  297. snappy/__pycache__/number.cpython-311.pyc +0 -0
  298. snappy/__pycache__/numeric_output_checker.cpython-311.pyc +0 -0
  299. snappy/__pycache__/pari.cpython-311.pyc +0 -0
  300. snappy/__pycache__/polyviewer.cpython-311.pyc +0 -0
  301. snappy/__pycache__/sage_helper.cpython-311.pyc +0 -0
  302. snappy/__pycache__/version.cpython-311.pyc +0 -0
  303. snappy/doc/_sources/verify_canon.rst.txt +0 -90
  304. snappy/doc/_static/js/html5shiv-printshiv.min.js +0 -4
  305. snappy/doc/_static/js/html5shiv.min.js +0 -4
  306. snappy/doc/verify_canon.html +0 -304
  307. snappy/drilling/__pycache__/__init__.cpython-311.pyc +0 -0
  308. snappy/drilling/__pycache__/constants.cpython-311.pyc +0 -0
  309. snappy/drilling/__pycache__/crush.cpython-311.pyc +0 -0
  310. snappy/drilling/__pycache__/cusps.cpython-311.pyc +0 -0
  311. snappy/drilling/__pycache__/debug.cpython-311.pyc +0 -0
  312. snappy/drilling/__pycache__/epsilons.cpython-311.pyc +0 -0
  313. snappy/drilling/__pycache__/exceptions.cpython-311.pyc +0 -0
  314. snappy/drilling/__pycache__/fixed_points.cpython-311.pyc +0 -0
  315. snappy/drilling/__pycache__/geodesic_info.cpython-311.pyc +0 -0
  316. snappy/drilling/__pycache__/geodesic_tube.cpython-311.pyc +0 -0
  317. snappy/drilling/__pycache__/geometric_structure.cpython-311.pyc +0 -0
  318. snappy/drilling/__pycache__/line.cpython-311.pyc +0 -0
  319. snappy/drilling/__pycache__/moves.cpython-311.pyc +0 -0
  320. snappy/drilling/__pycache__/peripheral_curves.cpython-311.pyc +0 -0
  321. snappy/drilling/__pycache__/perturb.cpython-311.pyc +0 -0
  322. snappy/drilling/__pycache__/quotient_space.cpython-311.pyc +0 -0
  323. snappy/drilling/__pycache__/spatial_dict.cpython-311.pyc +0 -0
  324. snappy/drilling/__pycache__/subdivide.cpython-311.pyc +0 -0
  325. snappy/drilling/__pycache__/tracing.cpython-311.pyc +0 -0
  326. snappy/drilling/geodesic_tube.py +0 -441
  327. snappy/drilling/geometric_structure.py +0 -366
  328. snappy/drilling/line.py +0 -122
  329. snappy/drilling/quotient_space.py +0 -94
  330. snappy/drilling/spatial_dict.py +0 -128
  331. snappy/exterior_to_link/__pycache__/__init__.cpython-311.pyc +0 -0
  332. snappy/exterior_to_link/__pycache__/barycentric_geometry.cpython-311.pyc +0 -0
  333. snappy/exterior_to_link/__pycache__/exceptions.cpython-311.pyc +0 -0
  334. snappy/exterior_to_link/__pycache__/hyp_utils.cpython-311.pyc +0 -0
  335. snappy/exterior_to_link/__pycache__/link_projection.cpython-311.pyc +0 -0
  336. snappy/exterior_to_link/__pycache__/main.cpython-311.pyc +0 -0
  337. snappy/exterior_to_link/__pycache__/mcomplex_with_expansion.cpython-311.pyc +0 -0
  338. snappy/exterior_to_link/__pycache__/mcomplex_with_link.cpython-311.pyc +0 -0
  339. snappy/exterior_to_link/__pycache__/mcomplex_with_memory.cpython-311.pyc +0 -0
  340. snappy/exterior_to_link/__pycache__/pl_utils.cpython-311.pyc +0 -0
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@@ -57,9 +54,9 @@
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- <p>When used inside <a class="reference external" href="http://sagemath.org">Sage</a>, SnapPy can verify the
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105
- <ul>
106
- <li><p>Complex intervals for the shapes that are guaranteed to contain a true
107
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- <div class="highlight-default notranslate"><div class="highlight"><pre><span></span>sage: M = Manifold(&quot;m015(3,1)&quot;)
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- sage: M.tetrahedra_shapes(&#39;rect&#39;, intervals=True)
110
- [0.625222762246? + 3.177940133813?*I,
111
- -0.0075523593782? + 0.5131157955971?*I,
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- 0.6515818912107? - 0.1955023488930?*I]
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+ <section id="introduction">
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+ <span id="verify-primer"></span><h2>Introduction<a class="headerlink" href="#introduction" title="Link to this heading"></a></h2>
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+ <p>Several SnapPy methods use numerical computations with floating point
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+ approximations and can potentially result in incorrect results. This even
102
+ applies to methods whose output is purely combinatorial such as
103
+ <a class="reference internal" href="manifold.html#snappy.Manifold.canonical_retriangulation" title="snappy.Manifold.canonical_retriangulation"><code class="xref py py-meth docutils literal notranslate"><span class="pre">canonical_retriangulation()</span></code></a>.</p>
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+ <p>Many of these SnapPy methods can be supplied with a <code class="xref py py-attr docutils literal notranslate"><span class="pre">verified</span></code> flag to
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+ ensure that the result is provably correct. Note that verified computations are
106
+ only available when using SnapPy inside <a class="reference external" href="http://sagemath.org">SageMath</a>.
107
+ If the flag <code class="xref py py-attr docutils literal notranslate"><span class="pre">verified=True</span></code> is specified, an incorrect result is
108
+ never returned. Instead the method clearly indicates a failure, usually through
109
+ an exception:</p>
110
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sage</span><span class="p">:</span> <span class="n">M</span><span class="o">=</span><span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m004&quot;</span><span class="p">)</span>
111
+ <span class="n">sage</span><span class="p">:</span> <span class="n">M</span><span class="o">.</span><span class="n">drill_word</span><span class="p">(</span><span class="s1">&#39;abc&#39;</span><span class="p">,</span> <span class="n">verified</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">bits_prec</span> <span class="o">=</span> <span class="mi">40</span><span class="p">)</span>
112
+ <span class="o">...</span>
113
+ <span class="n">InsufficientPrecisionError</span><span class="p">:</span> <span class="n">When</span> <span class="n">re</span><span class="o">-</span><span class="n">tracing</span> <span class="n">the</span> <span class="n">geodesic</span><span class="p">,</span> <span class="n">the</span> <span class="n">intersection</span> <span class="k">with</span> <span class="n">the</span> <span class="nb">next</span> <span class="n">tetrahedron</span> <span class="n">face</span> <span class="n">was</span> <span class="n">too</span> <span class="n">close</span> <span class="n">to</span> <span class="n">the</span> <span class="n">previous</span> <span class="n">to</span> <span class="n">tell</span> <span class="n">them</span> <span class="n">apart</span><span class="o">.</span> <span class="n">Increasing</span> <span class="n">the</span> <span class="n">precision</span> <span class="n">will</span> <span class="n">probably</span> <span class="n">avoid</span> <span class="n">this</span> <span class="n">problem</span><span class="o">.</span>
113
114
  </pre></div>
114
115
  </div>
115
- <p>(Specify <code class="xref py py-attr docutils literal notranslate"><span class="pre">bits_prec</span></code> or <code class="xref py py-attr docutils literal notranslate"><span class="pre">dec_prec</span></code> for higher precision intervals.)</p>
116
- </li>
116
+ <p>Often, such a failure can be advoided by increasing the precision. In
117
+ particular, this applies if the exception is a (subclass of)
118
+ <code class="xref py py-class docutils literal notranslate"><span class="pre">InsufficientPrecisionError</span></code>:</p>
119
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sage</span><span class="p">:</span> <span class="n">M</span><span class="o">.</span><span class="n">drill_word</span><span class="p">(</span><span class="s1">&#39;abc&#39;</span><span class="p">,</span> <span class="n">verified</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">bits_prec</span> <span class="o">=</span> <span class="mi">60</span><span class="p">)</span>
120
+ <span class="n">m004_drilled</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span><span class="mi">0</span><span class="p">)(</span><span class="mi">0</span><span class="p">,</span><span class="mi">0</span><span class="p">)</span>
121
+ </pre></div>
122
+ </div>
123
+ <p>Note that, <a class="reference internal" href="manifold.html#snappy.Manifold.verify_hyperbolicity" title="snappy.Manifold.verify_hyperbolicity"><code class="xref py py-meth docutils literal notranslate"><span class="pre">verify_hyperbolicity()</span></code></a> is different though
124
+ and does not throw an exception. Instead, it returns a bool indicating success
125
+ as part of its output. This is for compatibility with
126
+ <a class="reference external" href="http://www.oishi.info.waseda.ac.jp/~takayasu/hikmot/">HIKMOT</a>’s
127
+ <code class="docutils literal notranslate"><span class="pre">verify_hyperbolicty</span></code>:</p>
128
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span>sage: M.verify_hyperbolicity(bits_prec=10)
129
+ (False, [])
130
+ sage: M.verify_hyperbolicity()
131
+ (True,
132
+ [0.50000000000000? + 0.86602540378444?*I,
133
+ 0.50000000000000? + 0.86602540378444?*I])
134
+ </pre></div>
135
+ </div>
136
+ <p>As illustrated above, the result consists of intervals
137
+ (of type SageMath’s <code class="docutils literal notranslate"><span class="pre">RealIntervalField</span></code> or
138
+ <code class="docutils literal notranslate"><span class="pre">ComplexIntervalField</span></code>) if the output of a computation is numerical
139
+ and <code class="xref py py-attr docutils literal notranslate"><span class="pre">verified=True</span></code> is specified. These intervals contain the true
140
+ value.</p>
141
+ </section>
142
+ <section id="overview">
143
+ <h2>Overview<a class="headerlink" href="#overview" title="Link to this heading"></a></h2>
144
+ <p>Some examples of verified computations are:</p>
145
+ <ul>
117
146
  <li><p>Verify the hyperbolicity
118
147
  of an orientable 3-manifold giving complex intervals for the
119
148
  shapes corresponding to a hyperbolic structure or holonomy representation with
@@ -142,9 +171,8 @@ sage: M.complex_volume(verified_modulo_2_torsion=True)
142
171
  <p>(Note that when using verified computation, the Chern-Simons invariant is only computed
143
172
  modulo pi^2/2 even though it is defined modulo pi^2.)</p>
144
173
  </li>
145
- <li><p>Give the <a class="reference internal" href="verify_canon.html"><span class="doc">canonical retriangulation</span></a> (a close
146
- relative to the canonical cell decomposition) of a cusped hyperbolic
147
- manifold using intervals or exact arithmetic if necessary with
174
+ <li><p>Give the (a close relative to the canonical cell decomposition) of a cusped
175
+ hyperbolic manifold using intervals or exact arithmetic if necessary with
148
176
  <a class="reference internal" href="manifold.html#snappy.Manifold.canonical_retriangulation" title="snappy.Manifold.canonical_retriangulation"><code class="xref py py-meth docutils literal notranslate"><span class="pre">canonical_retriangulation()</span></code></a>:</p>
149
177
  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sage</span><span class="p">:</span> <span class="n">M</span> <span class="o">=</span> <span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m412&quot;</span><span class="p">)</span>
150
178
  <span class="n">sage</span><span class="p">:</span> <span class="n">K</span> <span class="o">=</span> <span class="n">M</span><span class="o">.</span><span class="n">canonical_retriangulation</span><span class="p">(</span><span class="n">verified</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span>
@@ -161,7 +189,7 @@ takes at most a couple of seconds, typically, far less. Manifolds with more simp
161
189
  a higher value for
162
190
  <code class="xref py py-attr docutils literal notranslate"><span class="pre">exact_bits_prec_and_degrees</span></code>.</p>
163
191
  </li>
164
- <li><p>The <a class="reference internal" href="verify_canon.html"><span class="doc">isometry signature</span></a> which is a complete invariant of the isometry type
192
+ <li><p>The isometry signature which is a complete invariant of the isometry type
165
193
  of a cusped hyperbolic manifold (i.e., two manifolds are isometric if and only
166
194
  if they have the same isometry signature):</p>
167
195
  <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sage</span><span class="p">:</span> <span class="n">M</span> <span class="o">=</span> <span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m412&quot;</span><span class="p">)</span>
@@ -220,22 +248,48 @@ to implement the techniques to find exceptional Dehn surgeries
220
248
  (<a class="reference external" href="https://arxiv.org/abs/1109.0903">arXiv:1109.0903</a> and
221
249
  <a class="reference external" href="https://arxiv.org/abs/1310.3472">arXiv:1310.3472</a>).</p>
222
250
  </li>
251
+ <li><p>An example of finding all geodesics up to length 1:</p>
252
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sage</span><span class="p">:</span> <span class="kn">from</span> <span class="nn">sage.all</span> <span class="kn">import</span> <span class="n">RIF</span>
253
+ <span class="n">sage</span><span class="p">:</span> <span class="n">L</span> <span class="o">=</span> <span class="n">RIF</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
254
+ <span class="n">sage</span><span class="p">:</span> <span class="n">M</span> <span class="o">=</span> <span class="n">Manifold</span><span class="p">(</span><span class="s2">&quot;m003&quot;</span><span class="p">)</span>
255
+ <span class="n">sage</span><span class="p">:</span> <span class="n">spec</span> <span class="o">=</span> <span class="n">M</span><span class="o">.</span><span class="n">length_spectrum_alt_gen</span><span class="p">(</span><span class="n">verified</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
256
+ <span class="n">sage</span><span class="p">:</span> <span class="n">n</span> <span class="o">=</span> <span class="mi">0</span>
257
+ <span class="n">sage</span><span class="p">:</span> <span class="k">for</span> <span class="n">g</span> <span class="ow">in</span> <span class="n">spec</span><span class="p">:</span>
258
+ <span class="o">...</span> <span class="k">if</span> <span class="n">g</span><span class="o">.</span><span class="n">length</span><span class="o">.</span><span class="n">real</span><span class="p">()</span> <span class="o">&gt;</span> <span class="n">L</span><span class="p">:</span>
259
+ <span class="o">...</span> <span class="k">break</span> <span class="c1"># Done! All subsequent geodesics will be longer.</span>
260
+ <span class="o">...</span> <span class="k">if</span> <span class="n">g</span><span class="o">.</span><span class="n">length</span><span class="o">.</span><span class="n">real</span><span class="p">()</span> <span class="o">&lt;</span> <span class="n">L</span><span class="p">:</span>
261
+ <span class="o">...</span> <span class="n">n</span> <span class="o">+=</span> <span class="mi">1</span>
262
+ <span class="o">...</span> <span class="k">continue</span>
263
+ <span class="o">...</span> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Interval too large. Increase precision.&quot;</span><span class="p">)</span>
264
+ <span class="n">sage</span><span class="p">:</span> <span class="n">n</span>
265
+ <span class="mi">4</span>
266
+ </pre></div>
267
+ </div>
268
+ </li>
223
269
  </ul>
270
+ <p>Additionally, we can compute complex intervals for the shapes that are
271
+ guaranteed to contain a true solution to the rectangular gluing equations
272
+ that is not necessarily a geometric solution (specify <code class="xref py py-attr docutils literal notranslate"><span class="pre">bits_prec</span></code>
273
+ or <code class="xref py py-attr docutils literal notranslate"><span class="pre">dec_prec</span></code> for higher precision intervals.):</p>
274
+ <div class="highlight-default notranslate"><div class="highlight"><pre><span></span>sage: M = Manifold(&quot;m015(3,1)&quot;)
275
+ sage: M.tetrahedra_shapes(&#39;rect&#39;, intervals=True)
276
+ [0.625222762246? + 3.177940133813?*I,
277
+ -0.0075523593782? + 0.5131157955971?*I,
278
+ 0.6515818912107? - 0.1955023488930?*I]
279
+ </pre></div>
280
+ </div>
224
281
  <p>This is all based on a reimplementation of <a class="reference external" href="http://www.oishi.info.waseda.ac.jp/~takayasu/hikmot/">HIKMOT</a> which
225
282
  pioneered the use of interval methods for hyperbolic manifolds (also see
226
283
  <a class="reference external" href="http://ww2.ii.uj.edu.pl/~zgliczyn/cap07/krawczyk.pdf">Zgliczynski’s notes</a>). It
227
284
  can be used in a way very similar to HIKMOT, but uses Sage’s complex
228
285
  interval types for certification. It furthermore makes use of code by
229
- <a class="reference external" href="http://arxiv.org/abs/1407.7827/">Dunfield, Hoffman, Licata</a>. The code to
230
- compute the isomorphism signature was ported over from
231
- <a class="reference external" href="https://regina-normal.github.io/">Regina</a>.</p>
286
+ <a class="reference external" href="http://arxiv.org/abs/1407.7827/">Dunfield, Hoffman, Licata</a>.</p>
232
287
  <p>This verification code was contributed by Matthias Goerner.</p>
233
288
  </section>
234
289
  <section id="verified-computation-topics">
235
- <h2>Verified computation topics<a class="headerlink" href="#verified-computation-topics" title="Permalink to this heading"></a></h2>
290
+ <h2>Verified computation topics<a class="headerlink" href="#verified-computation-topics" title="Link to this heading"></a></h2>
236
291
  <div class="toctree-wrapper compound">
237
292
  <ul>
238
- <li class="toctree-l1"><a class="reference internal" href="verify_canon.html">Canonical retriangulation and isometry signature</a></li>
239
293
  <li class="toctree-l1"><a class="reference internal" href="verify_internals.html">Internals of verified computations</a></li>
240
294
  </ul>
241
295
  </div>
@@ -247,13 +301,13 @@ compute the isomorphism signature was ported over from
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  </div>
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  <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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  <hr/>
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  <div role="contentinfo">
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- <p>&#169; Copyright 2009-2023, by Marc Culler, Nathan Dunfield, Matthias Goerner, Jeffrey Weeks and others.</p>
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+ <p>&#169; Copyright 2009-2025, by Marc Culler, Nathan Dunfield, Matthias Goerner, Jeffrey Weeks and others.</p>
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