snakemake-executor-plugin-slurm 0.5.1__py3-none-any.whl → 0.5.2__py3-none-any.whl

snakemake_executor_plugin_slurm/__init__.py

@@ -123,14 +123,23 @@ class Executor(RemoteExecutor):
                 "- submitting without. This might or might not work on your cluster."
             )
 
-        # MPI job
-        if job.resources.get("mpi", False):
-            if job.resources.get("nodes", False):
-                call += f" --nodes={job.resources.get('nodes', 1)}"
+        if job.resources.get("nodes", False):
+            call += f" --nodes={job.resources.get('nodes', 1)}"
 
         # fixes #40 - set ntasks regarlless of mpi, because
         # SLURM v22.05 will require it for all jobs
         call += f" --ntasks={job.resources.get('tasks', 1)}"
+        # MPI job
+        if job.resources.get("mpi", False):
+            if not job.resources.get("tasks_per_node") and not job.resources.get(
+                "nodes"
+            ):
+                self.logger.warning(
+                    "MPI job detected, but no 'tasks_per_node' or 'nodes' "
+                    "specified. Assuming 'tasks_per_node=1'."
+                    "Probably not what you want."
+                )
+
         call += f" --cpus-per-task={get_cpus_per_task(job)}"
 
         if job.resources.get("slurm_extra"):

{snakemake_executor_plugin_slurm-0.5.1.dist-info → snakemake_executor_plugin_slurm-0.5.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: snakemake-executor-plugin-slurm
-Version: 0.5.1
+Version: 0.5.2
 Summary: A Snakemake executor plugin for submitting jobs to a SLURM cluster.
 Home-page: https://github.com/snakemake/snakemake-executor-plugin-slurm
 License: MIT

snakemake_executor_plugin_slurm-0.5.2.dist-info/RECORD

@@ -0,0 +1,5 @@
+snakemake_executor_plugin_slurm/__init__.py,sha256=q25l-j-o7I4hjHIX8mIuyEqde4g_oz7_bjZuflcGTnU,20908
+snakemake_executor_plugin_slurm-0.5.2.dist-info/LICENSE,sha256=YVc4xTLWMqGfFL36120k7rzXtsT6e4RkJsh68VVn12s,1076
+snakemake_executor_plugin_slurm-0.5.2.dist-info/METADATA,sha256=7dUfUtoxbgD-ZluaigOJJAqKwMw1XJOXjJ0RJvCMVyo,1380
+snakemake_executor_plugin_slurm-0.5.2.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+snakemake_executor_plugin_slurm-0.5.2.dist-info/RECORD,,

snakemake_executor_plugin_slurm-0.5.1.dist-info/RECORD

@@ -1,5 +0,0 @@
-snakemake_executor_plugin_slurm/__init__.py,sha256=Ws-zsZP80iCC6q78M0mHea0fQhD0FtktpmfbxkC-4AQ,20551
-snakemake_executor_plugin_slurm-0.5.1.dist-info/LICENSE,sha256=YVc4xTLWMqGfFL36120k7rzXtsT6e4RkJsh68VVn12s,1076
-snakemake_executor_plugin_slurm-0.5.1.dist-info/METADATA,sha256=lkfe53yQkU9ZFupesBM4k8LG-lnx-U7pK5X8dl0E5XQ,1380
-snakemake_executor_plugin_slurm-0.5.1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-snakemake_executor_plugin_slurm-0.5.1.dist-info/RECORD,,