snakemake-executor-plugin-slurm 0.3.2__py3-none-any.whl → 0.4.1__py3-none-any.whl

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Files changed (6) hide show
  1. snakemake_executor_plugin_slurm/__init__.py +12 -3
  2. {snakemake_executor_plugin_slurm-0.3.2.dist-info → snakemake_executor_plugin_slurm-0.4.1.dist-info}/METADATA +1 -1
  3. snakemake_executor_plugin_slurm-0.4.1.dist-info/RECORD +5 -0
  4. {snakemake_executor_plugin_slurm-0.3.2.dist-info → snakemake_executor_plugin_slurm-0.4.1.dist-info}/WHEEL +1 -1
  5. snakemake_executor_plugin_slurm-0.3.2.dist-info/RECORD +0 -5
  6. {snakemake_executor_plugin_slurm-0.3.2.dist-info → snakemake_executor_plugin_slurm-0.4.1.dist-info}/LICENSE +0 -0
snakemake_executor_plugin_slurm/__init__.py CHANGED
@@ -67,7 +67,14 @@ class Executor(RemoteExecutor):
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  log_folder = f"group_{job.name}" if job.is_group() else f"rule_{job.name}"
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- slurm_logfile = os.path.abspath(f".snakemake/slurm_logs/{log_folder}/%j.log")
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+ try:
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+ wildcard_str = f"_{'_'.join(job.wildcards)}" if job.wildcards else ""
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+ except AttributeError:
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+ wildcard_str = ""
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+
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+ slurm_logfile = os.path.abspath(
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+ f".snakemake/slurm_logs/{log_folder}/%j{wildcard_str}.log"
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+ )
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  os.makedirs(os.path.dirname(slurm_logfile), exist_ok=True)
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  # generic part of a submission string:
@@ -107,8 +114,10 @@ class Executor(RemoteExecutor):
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  if job.resources.get("mpi", False):
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  if job.resources.get("nodes", False):
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  call += f" --nodes={job.resources.get('nodes', 1)}"
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- if job.resources.get("tasks", False):
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- call += f" --ntasks={job.resources.get('tasks', 1)}"
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+
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+ # fixes #40 - set ntasks regarlless of mpi, because
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+ # SLURM v22.05 will require it for all jobs
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+ call += f" --ntasks={job.resources.get('tasks', 1)}"
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  cpus_per_task = job.threads
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  if job.resources.get("cpus_per_task"):
{snakemake_executor_plugin_slurm-0.3.2.dist-info → snakemake_executor_plugin_slurm-0.4.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: snakemake-executor-plugin-slurm
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- Version: 0.3.2
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+ Version: 0.4.1
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  Summary: A Snakemake executor plugin for submitting jobs to a SLURM cluster.
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  Home-page: https://github.com/snakemake/snakemake-executor-plugin-slurm
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  License: MIT
snakemake_executor_plugin_slurm-0.4.1.dist-info/RECORD ADDED
@@ -0,0 +1,5 @@
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+ snakemake_executor_plugin_slurm/__init__.py,sha256=sgumTnrMWWUTslJywjw_WoX_k5cx-UsMbvnFC9Vn9Ek,19994
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+ snakemake_executor_plugin_slurm-0.4.1.dist-info/LICENSE,sha256=YVc4xTLWMqGfFL36120k7rzXtsT6e4RkJsh68VVn12s,1076
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+ snakemake_executor_plugin_slurm-0.4.1.dist-info/METADATA,sha256=gT36_OAj2fYfC32uaySUuF7kSaDPeQ6O1pfrZMSH3UY,1233
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+ snakemake_executor_plugin_slurm-0.4.1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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+ snakemake_executor_plugin_slurm-0.4.1.dist-info/RECORD,,
{snakemake_executor_plugin_slurm-0.3.2.dist-info → snakemake_executor_plugin_slurm-0.4.1.dist-info}/WHEEL RENAMED
@@ -1,4 +1,4 @@
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  Wheel-Version: 1.0
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- Generator: poetry-core 1.8.1
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+ Generator: poetry-core 1.9.0
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  Root-Is-Purelib: true
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  Tag: py3-none-any
snakemake_executor_plugin_slurm-0.3.2.dist-info/RECORD DELETED
@@ -1,5 +0,0 @@
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- snakemake_executor_plugin_slurm/__init__.py,sha256=CwqWOHG5IP2Nq8p9g03ekm5XPn524Xuqp292cLK3hZI,19746
2
- snakemake_executor_plugin_slurm-0.3.2.dist-info/LICENSE,sha256=YVc4xTLWMqGfFL36120k7rzXtsT6e4RkJsh68VVn12s,1076
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- snakemake_executor_plugin_slurm-0.3.2.dist-info/METADATA,sha256=RPaJpB3Es2EAxKV9ev-7QYQZmBGWi-jv24Ca8NrxhQw,1233
4
- snakemake_executor_plugin_slurm-0.3.2.dist-info/WHEEL,sha256=FMvqSimYX_P7y0a7UY-_Mc83r5zkBZsCYPm7Lr0Bsq4,88
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- snakemake_executor_plugin_slurm-0.3.2.dist-info/RECORD,,