snakemake-executor-plugin-slurm 0.10.0__py3-none-any.whl → 0.10.1__py3-none-any.whl

snakemake_executor_plugin_slurm/__init__.py

@@ -137,7 +137,7 @@ class Executor(RemoteExecutor):
             f"sbatch "
             f"--parsable "
             f"--job-name {self.run_uuid} "
-            f"--output {slurm_logfile} "
+            f"--output '{slurm_logfile}' "
             f"--export=ALL "
             f"--comment {comment_str}"
         )
@@ -408,6 +408,14 @@ We leave it to SLURM to resume your job(s)"""
                 )
             except subprocess.TimeoutExpired:
                 self.logger.warning("Unable to cancel jobs within a minute.")
+            except subprocess.CalledProcessError as e:
+                msg = e.stderr.strip()
+                if msg:
+                    msg = f": {msg}"
+                raise WorkflowError(
+                    "Unable to cancel jobs with scancel "
+                    f"(exit code {e.returncode}){msg}"
+                ) from e
 
     async def job_stati(self, command):
         """Obtain SLURM job status of all submitted jobs with sacct

{snakemake_executor_plugin_slurm-0.10.0.dist-info → snakemake_executor_plugin_slurm-0.10.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: snakemake-executor-plugin-slurm
-Version: 0.10.0
+Version: 0.10.1
 Summary: A Snakemake executor plugin for submitting jobs to a SLURM cluster.
 Home-page: https://github.com/snakemake/snakemake-executor-plugin-slurm
 License: MIT

snakemake_executor_plugin_slurm-0.10.1.dist-info/RECORD

@@ -0,0 +1,6 @@
+snakemake_executor_plugin_slurm/__init__.py,sha256=GaX4hpsnNtX6pM6lRncupCGv_9q_rKEmdgHWo9nB6dw,24561
+snakemake_executor_plugin_slurm/utils.py,sha256=DuJdFJsAmvFsrnpyb8kMoqxTEEmTsEVxroDS1t9qOGw,434
+snakemake_executor_plugin_slurm-0.10.1.dist-info/LICENSE,sha256=YVc4xTLWMqGfFL36120k7rzXtsT6e4RkJsh68VVn12s,1076
+snakemake_executor_plugin_slurm-0.10.1.dist-info/METADATA,sha256=sFVmrUiTiqZLAjD5jKElcIuipus1rlz5bd4pLIiF1jI,1381
+snakemake_executor_plugin_slurm-0.10.1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+snakemake_executor_plugin_slurm-0.10.1.dist-info/RECORD,,

snakemake_executor_plugin_slurm-0.10.0.dist-info/RECORD

@@ -1,6 +0,0 @@
-snakemake_executor_plugin_slurm/__init__.py,sha256=VMIZpkp-R61GKq2jXoLxElxfSguHwgCsv0zv8-usHQY,24229
-snakemake_executor_plugin_slurm/utils.py,sha256=DuJdFJsAmvFsrnpyb8kMoqxTEEmTsEVxroDS1t9qOGw,434
-snakemake_executor_plugin_slurm-0.10.0.dist-info/LICENSE,sha256=YVc4xTLWMqGfFL36120k7rzXtsT6e4RkJsh68VVn12s,1076
-snakemake_executor_plugin_slurm-0.10.0.dist-info/METADATA,sha256=_88ZsjTcrcyn0m2OY1LryvmW_oJY0fzWQMeBNI8lnjk,1381
-snakemake_executor_plugin_slurm-0.10.0.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-snakemake_executor_plugin_slurm-0.10.0.dist-info/RECORD,,