smftools 0.2.5__py3-none-any.whl → 0.3.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (148) hide show
  1. smftools/__init__.py +39 -7
  2. smftools/_settings.py +2 -0
  3. smftools/_version.py +3 -1
  4. smftools/cli/__init__.py +1 -0
  5. smftools/cli/archived/cli_flows.py +2 -0
  6. smftools/cli/helpers.py +2 -0
  7. smftools/cli/hmm_adata.py +7 -2
  8. smftools/cli/load_adata.py +130 -98
  9. smftools/cli/preprocess_adata.py +2 -0
  10. smftools/cli/spatial_adata.py +5 -1
  11. smftools/cli_entry.py +26 -1
  12. smftools/config/__init__.py +2 -0
  13. smftools/config/default.yaml +4 -1
  14. smftools/config/experiment_config.py +6 -0
  15. smftools/datasets/__init__.py +2 -0
  16. smftools/hmm/HMM.py +9 -3
  17. smftools/hmm/__init__.py +24 -13
  18. smftools/hmm/archived/apply_hmm_batched.py +2 -0
  19. smftools/hmm/archived/calculate_distances.py +2 -0
  20. smftools/hmm/archived/call_hmm_peaks.py +2 -0
  21. smftools/hmm/archived/train_hmm.py +2 -0
  22. smftools/hmm/call_hmm_peaks.py +5 -2
  23. smftools/hmm/display_hmm.py +4 -1
  24. smftools/hmm/hmm_readwrite.py +7 -2
  25. smftools/hmm/nucleosome_hmm_refinement.py +2 -0
  26. smftools/informatics/__init__.py +53 -34
  27. smftools/informatics/archived/bam_conversion.py +2 -0
  28. smftools/informatics/archived/bam_direct.py +2 -0
  29. smftools/informatics/archived/basecall_pod5s.py +2 -0
  30. smftools/informatics/archived/basecalls_to_adata.py +2 -0
  31. smftools/informatics/archived/conversion_smf.py +2 -0
  32. smftools/informatics/archived/deaminase_smf.py +1 -0
  33. smftools/informatics/archived/direct_smf.py +2 -0
  34. smftools/informatics/archived/fast5_to_pod5.py +2 -0
  35. smftools/informatics/archived/helpers/archived/__init__.py +2 -0
  36. smftools/informatics/archived/helpers/archived/align_and_sort_BAM.py +2 -0
  37. smftools/informatics/archived/helpers/archived/aligned_BAM_to_bed.py +2 -0
  38. smftools/informatics/archived/helpers/archived/bed_to_bigwig.py +2 -0
  39. smftools/informatics/archived/helpers/archived/canoncall.py +2 -0
  40. smftools/informatics/archived/helpers/archived/converted_BAM_to_adata.py +2 -0
  41. smftools/informatics/archived/helpers/archived/count_aligned_reads.py +2 -0
  42. smftools/informatics/archived/helpers/archived/demux_and_index_BAM.py +2 -0
  43. smftools/informatics/archived/helpers/archived/extract_base_identities.py +2 -0
  44. smftools/informatics/archived/helpers/archived/extract_mods.py +2 -0
  45. smftools/informatics/archived/helpers/archived/extract_read_features_from_bam.py +2 -0
  46. smftools/informatics/archived/helpers/archived/extract_read_lengths_from_bed.py +2 -0
  47. smftools/informatics/archived/helpers/archived/extract_readnames_from_BAM.py +2 -0
  48. smftools/informatics/archived/helpers/archived/find_conversion_sites.py +2 -0
  49. smftools/informatics/archived/helpers/archived/generate_converted_FASTA.py +2 -0
  50. smftools/informatics/archived/helpers/archived/get_chromosome_lengths.py +2 -0
  51. smftools/informatics/archived/helpers/archived/get_native_references.py +2 -0
  52. smftools/informatics/archived/helpers/archived/index_fasta.py +2 -0
  53. smftools/informatics/archived/helpers/archived/informatics.py +2 -0
  54. smftools/informatics/archived/helpers/archived/load_adata.py +2 -0
  55. smftools/informatics/archived/helpers/archived/make_modbed.py +2 -0
  56. smftools/informatics/archived/helpers/archived/modQC.py +2 -0
  57. smftools/informatics/archived/helpers/archived/modcall.py +2 -0
  58. smftools/informatics/archived/helpers/archived/ohe_batching.py +2 -0
  59. smftools/informatics/archived/helpers/archived/ohe_layers_decode.py +2 -0
  60. smftools/informatics/archived/helpers/archived/one_hot_decode.py +2 -0
  61. smftools/informatics/archived/helpers/archived/one_hot_encode.py +2 -0
  62. smftools/informatics/archived/helpers/archived/plot_bed_histograms.py +2 -0
  63. smftools/informatics/archived/helpers/archived/separate_bam_by_bc.py +2 -0
  64. smftools/informatics/archived/helpers/archived/split_and_index_BAM.py +2 -0
  65. smftools/informatics/archived/print_bam_query_seq.py +2 -0
  66. smftools/informatics/archived/subsample_fasta_from_bed.py +2 -0
  67. smftools/informatics/archived/subsample_pod5.py +2 -0
  68. smftools/informatics/bam_functions.py +737 -170
  69. smftools/informatics/basecalling.py +2 -0
  70. smftools/informatics/bed_functions.py +271 -61
  71. smftools/informatics/binarize_converted_base_identities.py +3 -0
  72. smftools/informatics/complement_base_list.py +2 -0
  73. smftools/informatics/converted_BAM_to_adata.py +66 -22
  74. smftools/informatics/fasta_functions.py +94 -10
  75. smftools/informatics/h5ad_functions.py +8 -2
  76. smftools/informatics/modkit_extract_to_adata.py +16 -6
  77. smftools/informatics/modkit_functions.py +2 -0
  78. smftools/informatics/ohe.py +2 -0
  79. smftools/informatics/pod5_functions.py +3 -2
  80. smftools/machine_learning/__init__.py +22 -6
  81. smftools/machine_learning/data/__init__.py +2 -0
  82. smftools/machine_learning/data/anndata_data_module.py +18 -4
  83. smftools/machine_learning/data/preprocessing.py +2 -0
  84. smftools/machine_learning/evaluation/__init__.py +2 -0
  85. smftools/machine_learning/evaluation/eval_utils.py +2 -0
  86. smftools/machine_learning/evaluation/evaluators.py +14 -9
  87. smftools/machine_learning/inference/__init__.py +2 -0
  88. smftools/machine_learning/inference/inference_utils.py +2 -0
  89. smftools/machine_learning/inference/lightning_inference.py +6 -1
  90. smftools/machine_learning/inference/sklearn_inference.py +2 -0
  91. smftools/machine_learning/inference/sliding_window_inference.py +2 -0
  92. smftools/machine_learning/models/__init__.py +2 -0
  93. smftools/machine_learning/models/base.py +7 -2
  94. smftools/machine_learning/models/cnn.py +7 -2
  95. smftools/machine_learning/models/lightning_base.py +16 -11
  96. smftools/machine_learning/models/mlp.py +5 -1
  97. smftools/machine_learning/models/positional.py +7 -2
  98. smftools/machine_learning/models/rnn.py +5 -1
  99. smftools/machine_learning/models/sklearn_models.py +14 -9
  100. smftools/machine_learning/models/transformer.py +7 -2
  101. smftools/machine_learning/models/wrappers.py +6 -2
  102. smftools/machine_learning/training/__init__.py +2 -0
  103. smftools/machine_learning/training/train_lightning_model.py +13 -3
  104. smftools/machine_learning/training/train_sklearn_model.py +2 -0
  105. smftools/machine_learning/utils/__init__.py +2 -0
  106. smftools/machine_learning/utils/device.py +5 -1
  107. smftools/machine_learning/utils/grl.py +5 -1
  108. smftools/optional_imports.py +31 -0
  109. smftools/plotting/__init__.py +32 -31
  110. smftools/plotting/autocorrelation_plotting.py +9 -5
  111. smftools/plotting/classifiers.py +16 -4
  112. smftools/plotting/general_plotting.py +6 -3
  113. smftools/plotting/hmm_plotting.py +12 -2
  114. smftools/plotting/position_stats.py +15 -7
  115. smftools/plotting/qc_plotting.py +6 -1
  116. smftools/preprocessing/__init__.py +35 -37
  117. smftools/preprocessing/archived/add_read_length_and_mapping_qc.py +2 -0
  118. smftools/preprocessing/archived/calculate_complexity.py +2 -0
  119. smftools/preprocessing/archived/mark_duplicates.py +2 -0
  120. smftools/preprocessing/archived/preprocessing.py +2 -0
  121. smftools/preprocessing/archived/remove_duplicates.py +2 -0
  122. smftools/preprocessing/binary_layers_to_ohe.py +2 -1
  123. smftools/preprocessing/calculate_complexity_II.py +4 -1
  124. smftools/preprocessing/calculate_pairwise_differences.py +2 -0
  125. smftools/preprocessing/calculate_pairwise_hamming_distances.py +3 -0
  126. smftools/preprocessing/calculate_position_Youden.py +9 -2
  127. smftools/preprocessing/filter_reads_on_length_quality_mapping.py +2 -0
  128. smftools/preprocessing/filter_reads_on_modification_thresholds.py +2 -0
  129. smftools/preprocessing/flag_duplicate_reads.py +42 -54
  130. smftools/preprocessing/make_dirs.py +2 -1
  131. smftools/preprocessing/min_non_diagonal.py +2 -0
  132. smftools/preprocessing/recipes.py +2 -0
  133. smftools/tools/__init__.py +26 -18
  134. smftools/tools/archived/apply_hmm.py +2 -0
  135. smftools/tools/archived/classifiers.py +2 -0
  136. smftools/tools/archived/classify_methylated_features.py +2 -0
  137. smftools/tools/archived/classify_non_methylated_features.py +2 -0
  138. smftools/tools/archived/subset_adata_v1.py +2 -0
  139. smftools/tools/archived/subset_adata_v2.py +2 -0
  140. smftools/tools/calculate_umap.py +3 -1
  141. smftools/tools/cluster_adata_on_methylation.py +7 -1
  142. smftools/tools/position_stats.py +17 -27
  143. {smftools-0.2.5.dist-info → smftools-0.3.0.dist-info}/METADATA +67 -33
  144. smftools-0.3.0.dist-info/RECORD +182 -0
  145. smftools-0.2.5.dist-info/RECORD +0 -181
  146. {smftools-0.2.5.dist-info → smftools-0.3.0.dist-info}/WHEEL +0 -0
  147. {smftools-0.2.5.dist-info → smftools-0.3.0.dist-info}/entry_points.txt +0 -0
  148. {smftools-0.2.5.dist-info → smftools-0.3.0.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,182 @@
1
+ smftools/__init__.py,sha256=Wun5eO3FHy7sAelTLlLdFj3NurqZFQxfO3U5YHJ3KcY,1247
2
+ smftools/_settings.py,sha256=QqZzjz6Y_-gZH4VJAPRCL68HRlGjzl3hXU7d-dMi8-M,418
3
+ smftools/_version.py,sha256=KdHlm9KKc9XEB182bG2710ZrIpNwJdS5TBcAjXA8U_M,58
4
+ smftools/cli_entry.py,sha256=wTjwx520HJIez2I1CGXAHhWXUC-nsRBZ6yUFJd_84XM,10519
5
+ smftools/constants.py,sha256=SWOJ76KTP2p3geyVkNQ8LB96NOmDDtjFEur2hSw7iyU,1289
6
+ smftools/logging_utils.py,sha256=jOptBgSW7NQcw7JTnw2-oWcN2qyrtfJkDpIZsfcU1Mk,1323
7
+ smftools/metadata.py,sha256=yGTMof2hAUR43QfgRSwK9mnOiTAznV3Usxzsvt185s4,14898
8
+ smftools/optional_imports.py,sha256=PpjWa-H-rlxwXJjkPLSHkiuim922xwDVsqlgFY8wWqw,1039
9
+ smftools/readwrite.py,sha256=GCCBAWXQezTtXMBr-2NeV-jJfdnl_yB_x5nuz7Bt11c,52413
10
+ smftools/cli/__init__.py,sha256=U4S_2y3zgLZVfMenHRaJFBW8yqh2mUBuI291LGQVOJ8,35
11
+ smftools/cli/helpers.py,sha256=Euf0e3rNgKAlnghlJvr5fKaiMxqPum1HD6CYI__Z3Ko,1435
12
+ smftools/cli/hmm_adata.py,sha256=2W1OLU_KaEtwUzkL_ZaecK4rQA9XyHJEurZEKQqnU00,40795
13
+ smftools/cli/load_adata.py,sha256=mVsXQQB8sRIIettJhC1Y1xnrBcSTrRs-p-O72TlhO1o,32453
14
+ smftools/cli/preprocess_adata.py,sha256=m_IWvUEBwIA5goJ2W7FQdqaA8tqQZB7gAXjjCWrcFCU,22632
15
+ smftools/cli/spatial_adata.py,sha256=rzEPJ5pM78zE27rp-Sgif0fw_I6NiPK71xyGnZnXYcc,32001
16
+ smftools/cli/archived/cli_flows.py,sha256=w1rPHSH8WzZn7owz0ra7WOUGlJSEsaRw_W3x-9Ra42k,4977
17
+ smftools/config/__init__.py,sha256=rcI3qG1DGfRcvQzh8bffiHuRPcmPsas5T8MN6uhScxA,106
18
+ smftools/config/conversion.yaml,sha256=N7lUO7-yAaJR6VhxRGCRc-ceAi0cp5xNASSIsXl9KwI,1242
19
+ smftools/config/deaminase.yaml,sha256=JCE1nF39AX436-3RyvuZN24gdJfriDijNv5XNHrMT8I,1357
20
+ smftools/config/default.yaml,sha256=yhcMASjqqccuHpTFepyjt6KHfNNR6IDNSH0rmEERXm4,13933
21
+ smftools/config/direct.yaml,sha256=Jw8Nj3QKQrCfJpVl8sGgCKdRvjk5cV66dzRlNfoDOzI,2269
22
+ smftools/config/discover_input_files.py,sha256=NcOqNYoXggLDieam8UMJAc2sWmoYOZ_Wqp2mApnlBfs,4015
23
+ smftools/config/experiment_config.py,sha256=IqSN7JwnnWWjOoDZWbQ2zATwjm_uywSSs8mhagII6ms,67521
24
+ smftools/datasets/F1_hybrid_NKG2A_enhander_promoter_GpC_conversion_SMF.h5ad.gz,sha256=q6wJtgFRDln0o20XNCx1qad3lwcdCoylqPN7wskTfI8,2926497
25
+ smftools/datasets/F1_sample_sheet.csv,sha256=9PodIIOXK2eamYPbC6DGnXdzgi9bRDovf296j1aM0ak,259
26
+ smftools/datasets/__init__.py,sha256=_G08ZAMlA9zpY5UjWTVlpAbW2YPS4PLCmz5g1pZdcCw,157
27
+ smftools/datasets/dCas9_m6A_invitro_kinetics.h5ad.gz,sha256=niOcVHaYY7h3XyvwSkN-V_NMBaRt2vTP5TrJO0CwMCs,8385050
28
+ smftools/datasets/datasets.py,sha256=-VOdONP-K_ftLDtLktRKbq3S6vSB4pzRQ6VYBxAy_4A,1074
29
+ smftools/hmm/HMM.py,sha256=_kYhqfmz46XBbx9Y12KF6dKp2XPcSHreZiQgavgx6h4,82437
30
+ smftools/hmm/__init__.py,sha256=vs-fjo-v9y8EwdoErK6KDBm-YzD_XmTtflsdTJlRgTg,746
31
+ smftools/hmm/call_hmm_peaks.py,sha256=CzTEz3EP_LNLirIVYzRxbV7_5fCBpLa9azLPSEt6s7s,13529
32
+ smftools/hmm/display_hmm.py,sha256=N94hmEKZGehPdsB9yLyY7U1_tTWDk2NTMU-PuWnEQqA,1321
33
+ smftools/hmm/hmm_readwrite.py,sha256=n-ok3wH1-anSn90vEA91jWKRbtq0bxM66hp2eYoWk34,687
34
+ smftools/hmm/nucleosome_hmm_refinement.py,sha256=lHB6XVJWhwN-jR1TjBOMIOBQ5soncAJbv3djbkyH1NU,6882
35
+ smftools/hmm/archived/apply_hmm_batched.py,sha256=W2-qx1XbcDJz4q38YCxb1eQn9h-hqAbFwDNK9SpGiw4,10684
36
+ smftools/hmm/archived/calculate_distances.py,sha256=MfBhXZNkjQvu9Y8LVMDpiQ4aS9uyfa4TUQbLGjQ1aM0,680
37
+ smftools/hmm/archived/call_hmm_peaks.py,sha256=6SklWXCn4H8LnlGvBncIsLhnf2gaNy8Qro_jxGJn7I0,5249
38
+ smftools/hmm/archived/train_hmm.py,sha256=sYF4RTEKPhE6MwK2eTAv4ghf-f7_33-FvhwUG6tegTU,2513
39
+ smftools/informatics/__init__.py,sha256=jxyzu37yR1lho4LP3WhQ6_Oez4f-un7vCqP80s8xR3g,2885
40
+ smftools/informatics/bam_functions.py,sha256=ErTV3ZrguIaGAqMnLnf-0QmfvvDRix0h_ehSRqKU2Ls,59008
41
+ smftools/informatics/basecalling.py,sha256=PgjWoOgfQaUOCoKpyaKO8m8sauMW3el6wdEtzGlvy4s,3699
42
+ smftools/informatics/bed_functions.py,sha256=9y3XNNl6QivqkWEfoH5XszP3Qsj0P-rCopgfd0HpFgs,21268
43
+ smftools/informatics/binarize_converted_base_identities.py,sha256=KRL-KT8MYADadHgRbTgoOFD30LlZazKHe10Hz9nO6Z4,7850
44
+ smftools/informatics/complement_base_list.py,sha256=6DInlD4cdjKJmmUv4Cp4UU9HHLe60Pm8RF9AoBfBfF0,571
45
+ smftools/informatics/converted_BAM_to_adata.py,sha256=YU7KBHgr0ulYZBv0I9PKI-p71JMZRvJbY9SlECWcQ3Q,25741
46
+ smftools/informatics/fasta_functions.py,sha256=MD-fL0BkExiDXMUSPkHaHrkOK7aqzOozWREGr5Gzw8w,14111
47
+ smftools/informatics/h5ad_functions.py,sha256=fX4CgO9ZSgYh9VbCmgGPXwNg5uolLJoNPcBZgzNwgMk,13167
48
+ smftools/informatics/modkit_extract_to_adata.py,sha256=wcat5i002BxBpSMPCLENDdu-cnH0K87p6NN1vFSbfc4,63551
49
+ smftools/informatics/modkit_functions.py,sha256=BvWd_qulVOQKZJFMd4pLTVD3ruo1dT48BmvQsdHB0_E,6103
50
+ smftools/informatics/ohe.py,sha256=fdMEdXG45hiCsHtmYkPsXJKLJ-SBaZktdGx-bmfI3a0,5997
51
+ smftools/informatics/pod5_functions.py,sha256=6_EA2StpslOe0phSwR9TDB_U-Tmx4ykuBcTAiOL0LPU,10327
52
+ smftools/informatics/run_multiqc.py,sha256=M67HhO5FIJl8qn3Qc9YUlnbk7kdDWyYVL0B9SenrqMo,1115
53
+ smftools/informatics/archived/bam_conversion.py,sha256=Gvy8X8AmCNYQEiwGjnmzs4YRMO3b5Cy6YDuVX8uLwJc,3366
54
+ smftools/informatics/archived/bam_direct.py,sha256=Dj0YGeQzPb2jdFdO6qW6gyTxgdfCHI_c-xpYUc2MARQ,3642
55
+ smftools/informatics/archived/basecall_pod5s.py,sha256=EAGHhKeCkFHybZmJrVR12kInnY5k0TXM__gLuplUOu4,3966
56
+ smftools/informatics/archived/basecalls_to_adata.py,sha256=sp9Lg8SVYMFzTmyL8AJNonzs77LUBgeyuCYEKUpX42k,3728
57
+ smftools/informatics/archived/conversion_smf.py,sha256=WizSqicLGNKXSKpy8BDhA0zau5Kp07zv4dZsasmbR-U,7213
58
+ smftools/informatics/archived/deaminase_smf.py,sha256=112-1F-xwR81uH713jDzdBXWmlZO0P10sCrFZrjgPCA,7256
59
+ smftools/informatics/archived/direct_smf.py,sha256=slFfojwKrZOOpiTXc52dSCmPATRkV754cmtdCbwWawY,7521
60
+ smftools/informatics/archived/fast5_to_pod5.py,sha256=5D1mcZ11WvQG0LFQAPzseaFxCkZOU4c3ShiIxexcda4,1434
61
+ smftools/informatics/archived/print_bam_query_seq.py,sha256=Dt0qfU6FU0qVoEBYhAd7C19Z_OexsD2YKx6aEIELcTk,1040
62
+ smftools/informatics/archived/subsample_fasta_from_bed.py,sha256=KsQ10HlsL86xhgqcSCCVTVyqzjGKaN78echFJNo_2t4,1669
63
+ smftools/informatics/archived/subsample_pod5.py,sha256=DLRUUBtvNRMkDc-ZHfvhXFFNbaUsdtmpr0Yxn8z5-fc,4737
64
+ smftools/informatics/archived/helpers/archived/__init__.py,sha256=U3l2rSkWBFXr_CH2l1tXSpizRoIxjVWpqS5zU2-xptE,2819
65
+ smftools/informatics/archived/helpers/archived/align_and_sort_BAM.py,sha256=62WEW3BvPQ1Dm1vhuO3_ADVSjO0Qe5fU8OJYX6UDFcM,5824
66
+ smftools/informatics/archived/helpers/archived/aligned_BAM_to_bed.py,sha256=I4RsezvaVxRWLkCM3n5ntGh5u0ixC8-0RW-2X4rbDGA,3427
67
+ smftools/informatics/archived/helpers/archived/bam_qc.py,sha256=r_NVoOnhDQp9sBOdLuqqSkR7rocSN0USOAcCfkBTtiQ,8482
68
+ smftools/informatics/archived/helpers/archived/bed_to_bigwig.py,sha256=gVTd542uxqzeb0qqR_MYdBHeVOvIrAdiEvQiDyrbv-g,3022
69
+ smftools/informatics/archived/helpers/archived/canoncall.py,sha256=0JC6rvUAkqqIafnA1tJmGr5lYO4-Epnlc88pur1CeFI,1777
70
+ smftools/informatics/archived/helpers/archived/concatenate_fastqs_to_bam.py,sha256=chc4yyrwuZVQewSDMFLHmphs6JovAIak4jvmGwUdQNQ,10237
71
+ smftools/informatics/archived/helpers/archived/converted_BAM_to_adata.py,sha256=EGhaftbGjhRLibTGKkQ9ngXYMcGnJfEOT2hZnH9ugLw,14627
72
+ smftools/informatics/archived/helpers/archived/count_aligned_reads.py,sha256=T3_KNtvf7CNL-Dr6JdnmfeJXf_0TTYHW80R7_0uFJSw,2212
73
+ smftools/informatics/archived/helpers/archived/demux_and_index_BAM.py,sha256=p9R4Imp6sSwGONkQnj3uespssIENQeW-3NzAFRYsWvg,2036
74
+ smftools/informatics/archived/helpers/archived/extract_base_identities.py,sha256=zrFXV2keqRxPJlpoRdT9Z4nrELb4ODUc2wx68OR57Ok,3079
75
+ smftools/informatics/archived/helpers/archived/extract_mods.py,sha256=6MMy-G_VNFwDSdzRoc-OJiCQ2FYyVejxUr6zZIpd-Dc,3931
76
+ smftools/informatics/archived/helpers/archived/extract_read_features_from_bam.py,sha256=F7f4hdA_6vMg9lCGVz49Sbo-eKAGpgfsm17nBVtSgTA,1527
77
+ smftools/informatics/archived/helpers/archived/extract_read_lengths_from_bed.py,sha256=pkk6PeNfAo1OHMMELF0MsIlL6E4tMO66czslVORaVzs,714
78
+ smftools/informatics/archived/helpers/archived/extract_readnames_from_BAM.py,sha256=3y2-u8dMoAdB2meycC7pTFQ_Mwesw9xnTtvfZtg9JPc,795
79
+ smftools/informatics/archived/helpers/archived/find_conversion_sites.py,sha256=VKqFabPqdwaXhVaRLbf7vOy9wAke-QYh2aZbYSlQuIA,2516
80
+ smftools/informatics/archived/helpers/archived/generate_converted_FASTA.py,sha256=n0eTfmMuInrfps_bZL4maCHznPEAjpEJzm6QMx719ZA,3855
81
+ smftools/informatics/archived/helpers/archived/get_chromosome_lengths.py,sha256=KWCu671FbaXNImI7bNB2PMYzuDinKxPzibM2tmoaVeM,1036
82
+ smftools/informatics/archived/helpers/archived/get_native_references.py,sha256=cEUIrVytDT2b8TikhYN0LD-lRhmLUR4fO2-rKDuEwyg,1017
83
+ smftools/informatics/archived/helpers/archived/index_fasta.py,sha256=yw4o_ZyB4_dOYk1eDcuQgW28PNpYzKo1Dtr57-3RFNc,815
84
+ smftools/informatics/archived/helpers/archived/informatics.py,sha256=oBwZYK5VyzcZq2dOe_bj26WeAiS3ETSQgoVCEwNYMhk,14608
85
+ smftools/informatics/archived/helpers/archived/load_adata.py,sha256=o81rKNBziO3tq70g4mA335Z3rkb47tag01dgGxTFYAw,33747
86
+ smftools/informatics/archived/helpers/archived/make_modbed.py,sha256=st9KCRQeqGz5cLQs3assW58Qixir38xCz57X3Z-X5jw,959
87
+ smftools/informatics/archived/helpers/archived/modQC.py,sha256=UvDEjWFtmNlnooJqpFpQxDdLJDKpL1vhTSeqfudc_f8,1087
88
+ smftools/informatics/archived/helpers/archived/modcall.py,sha256=8oq3yyaX4OUC0QpM3ulAqr3G83JYrkN_iBflYBuJNNg,1813
89
+ smftools/informatics/archived/helpers/archived/ohe_batching.py,sha256=3MiQ0jG4oBAGG_OXhyB4wK8nIYib-zP1ktCVBFzZrSQ,3011
90
+ smftools/informatics/archived/helpers/archived/ohe_layers_decode.py,sha256=b7qcPfQlVsdELxTpPgJKDP8ExHzZ2y78LkW1iNwNLwc,1078
91
+ smftools/informatics/archived/helpers/archived/one_hot_decode.py,sha256=P4Q3qQNJgpjZj90QIsXGrrGlWos4RCITvFA6a5ii4lQ,942
92
+ smftools/informatics/archived/helpers/archived/one_hot_encode.py,sha256=-XF7W300FDnIhHzpU9yInkkRqaDNcEqeGCSFl8WU2p4,2004
93
+ smftools/informatics/archived/helpers/archived/plot_bed_histograms.py,sha256=EGLGhE311_bqJjoUji-OC76YNq5ShmGoE-Jj2thpVT0,10066
94
+ smftools/informatics/archived/helpers/archived/separate_bam_by_bc.py,sha256=Bjgj0VsiX_yqWiUaZj8qyW4QF3CTXbsdSAzl03lVgT4,1836
95
+ smftools/informatics/archived/helpers/archived/split_and_index_BAM.py,sha256=X3ttYpnaMnf3jmbnOvFFmfzu25jIVcOwQ2mfsa5nijQ,1260
96
+ smftools/machine_learning/__init__.py,sha256=KsXx4KmwoBttbWjZbpgBXcslEKDJuGD2Xh9J4mBzln0,686
97
+ smftools/machine_learning/data/__init__.py,sha256=HHNNB0S-doKMW3L9Rtaz7PzNMsCYoBpacCWZfyEayVk,149
98
+ smftools/machine_learning/data/anndata_data_module.py,sha256=TkiTO-rngYGc3uXLIUNQxouuuqwcf6pl02nLB4KRW0c,11210
99
+ smftools/machine_learning/data/preprocessing.py,sha256=EWYWWp1HfVbEVZvClUcEB8BZWX97yzQcT59KyINOJlw,175
100
+ smftools/machine_learning/evaluation/__init__.py,sha256=7i2AWDMv3cSxAPRPGZKCXD9AJ9RMC7XxN9gVkaW7DLc,159
101
+ smftools/machine_learning/evaluation/eval_utils.py,sha256=ose14IPCkeiZvpbjogc1bOepkM7tagxwsAViT1N5r7I,1036
102
+ smftools/machine_learning/evaluation/evaluators.py,sha256=wbggnCWiViNRee_wNyJFooTxXOp1jPnZyoU8GY0ckKY,8625
103
+ smftools/machine_learning/inference/__init__.py,sha256=c-RGoMpW8B1PgHKAsVmgXuStBFUYQyhRpi-eB6zWb3M,209
104
+ smftools/machine_learning/inference/inference_utils.py,sha256=57_JcIVi8S3NAVqILi5rJ9abPWQp1-6x2Ll3mDu00CI,986
105
+ smftools/machine_learning/inference/lightning_inference.py,sha256=1axpyfnfJysWNpRoe6MiXpqxKUEifiASTSzv3kybKnA,2257
106
+ smftools/machine_learning/inference/sklearn_inference.py,sha256=vlI6nCxfCARTnHhJcUlQjEVbefCzZG7lbbM6CBepuvQ,1644
107
+ smftools/machine_learning/inference/sliding_window_inference.py,sha256=x0d4134iR6Mr2FdZlyrObM95fy2XM0vpLUMQvtExlPE,4465
108
+ smftools/machine_learning/models/__init__.py,sha256=oZCTXLpeqMhTaGAmZhYi91F148UYkS_ghvJnh80yjUA,479
109
+ smftools/machine_learning/models/base.py,sha256=WM47fmiYmIazo5yvphAka8r-3eb8XOs7fVjoiOj97ng,9547
110
+ smftools/machine_learning/models/cnn.py,sha256=KnwjrtEtblwxq3tDhXKL_VVeDhwBsaUBn1zxaGBAE5U,4585
111
+ smftools/machine_learning/models/lightning_base.py,sha256=hdFgRUj-r2bkb_zjYeAEryGrGbAAOQqypeSg7jJlY8o,14503
112
+ smftools/machine_learning/models/mlp.py,sha256=AfcL8tDPKhFATNwEbI8XDXz7OpFvtJViXEPjUUNMNso,994
113
+ smftools/machine_learning/models/positional.py,sha256=8EpNWWEpozN7XeU9GpV2wgNOGt2T7UQGE5Yr0SmrqXM,791
114
+ smftools/machine_learning/models/rnn.py,sha256=Ss1hfOIW-Ppctllu_10Fu0HH1w9jc93mCgU04xPqB0g,832
115
+ smftools/machine_learning/models/sklearn_models.py,sha256=8jm5C0dtGOwp-joVCcgRCFzZHgY4bX2F8VML3SqKyiU,10831
116
+ smftools/machine_learning/models/transformer.py,sha256=Xjmwno1RjPEuEemo5NKkvatjd9q0g-RKjwYI7ptLf00,10968
117
+ smftools/machine_learning/models/wrappers.py,sha256=71ppq58Kyss_i2yIHhj5vA0SsfNc8oCtH8LzuYofVlo,829
118
+ smftools/machine_learning/training/__init__.py,sha256=t1UjYKGngmgMcUCaVLDlL5QVyIILIkKSuqJQoeXpM0w,222
119
+ smftools/machine_learning/training/train_lightning_model.py,sha256=POq6Qds-Y1m3IRxBkvMcQBNYT0N156laqW5nVBBMpKo,4538
120
+ smftools/machine_learning/training/train_sklearn_model.py,sha256=zQ5SQpu_sl7IVcZ0yaelzN4WJLJjbo-DEGXsvRyOeUw,3147
121
+ smftools/machine_learning/utils/__init__.py,sha256=aiCNpHD08ENEBtz8jzDfVZ8cB7ef9uOE7YaOPDkQUYg,99
122
+ smftools/machine_learning/utils/device.py,sha256=2D5TF6DQIZKTcyNqIcJ7UMFeiWS_kCAvZUBK6XngCXk,432
123
+ smftools/machine_learning/utils/grl.py,sha256=ptr-08dRKAGBZ1cySy_B90GgMn5kXtNXlcUC4PJ5mNA,485
124
+ smftools/plotting/__init__.py,sha256=JrfnlocBQdW2QeP207PDUcx_4DMiOPLszxZBBml9POw,1478
125
+ smftools/plotting/autocorrelation_plotting.py,sha256=gc3iyGgFEvMcyHXE2K8S956Nx6IfduglOOeJj3te8nU,30590
126
+ smftools/plotting/classifiers.py,sha256=9Qt0eixvgE3WXl6jcwPm7O3ATA7Q6mfqRh_B_9M2qTQ,16749
127
+ smftools/plotting/general_plotting.py,sha256=ShN8R0yauo-Br_IDy3ZlM5VR3wuetFaEtLxK5r6Nn8A,69455
128
+ smftools/plotting/hmm_plotting.py,sha256=wPROxP-IJj-lY1I70s5YYy-H-XFfbcVol8PS2aw7srQ,11644
129
+ smftools/plotting/position_stats.py,sha256=yxZx0Hjx4MsKINe9kkq-R7TkjODBGaDrbH9y0mrrTWs,19351
130
+ smftools/plotting/qc_plotting.py,sha256=ODK8UrjVrAJeG8Qfu09DmAJ_o9GJaXRxGwN0pEgbHAU,10358
131
+ smftools/preprocessing/__init__.py,sha256=l_oNlEOjrzoAZbTa66y9prIkEPbGcH4F1J2MyyMmesE,1855
132
+ smftools/preprocessing/append_base_context.py,sha256=Z18Izb9-gZ4_ifXOHFZqcmPOradjCiyJZMZ5oTDfiLQ,7102
133
+ smftools/preprocessing/append_binary_layer_by_base_context.py,sha256=7mFG7xjAPgm_60AcdCnnjJZK5gJe4VuLohopkrAHmvQ,7640
134
+ smftools/preprocessing/binarize.py,sha256=eDFLybKKIF2wcrtN3JWVjeGXSUayezxLhX76UllAhVc,888
135
+ smftools/preprocessing/binarize_on_Youden.py,sha256=JTHosTDy9-gJ0bPrHkGnz_Ao_AeE8IiutqFA6MksdM8,4887
136
+ smftools/preprocessing/binary_layers_to_ohe.py,sha256=nYvAefdIKGj-JyNtBqHcekJKI4BI2CM9pN-Mq1BT-28,1931
137
+ smftools/preprocessing/calculate_complexity_II.py,sha256=iVh5BcLCPOndVeN4A7Gw74pMBa83UQuxtV5o_sVFUNs,10367
138
+ smftools/preprocessing/calculate_consensus.py,sha256=1_-ldkwQ3JT5Rns9thIfV-HJbSKFW2b1Auida96lhGE,2377
139
+ smftools/preprocessing/calculate_coverage.py,sha256=HZ8rtEmb-z6XCr-EvMfl4rc_9nbTJRztyEk8xUg7feE,2777
140
+ smftools/preprocessing/calculate_pairwise_differences.py,sha256=BRht5E8BtmJp_mxUSH5WfguhXaYV1zdPXZQLL1Wu6lI,1799
141
+ smftools/preprocessing/calculate_pairwise_hamming_distances.py,sha256=86MioHtN6mpH04bj-3UNv2Vistglt8I0ZMALKNEAq7g,999
142
+ smftools/preprocessing/calculate_position_Youden.py,sha256=HKnQAZvff1i8FVSxLkhcGwR2kmAq63izsOBGdCd3ws8,9146
143
+ smftools/preprocessing/calculate_read_length_stats.py,sha256=y2R5lU6ObRBCAhSHKLEZYpgm88woPd9d15NWVthIi_A,4790
144
+ smftools/preprocessing/calculate_read_modification_stats.py,sha256=L1X0LatpjPI5wA1j7MjFgukePYGo75DcgJCYPlhVAGM,5319
145
+ smftools/preprocessing/clean_NaN.py,sha256=hrPhbKfqDpSiXLXXJxvcmtwqFhOecJVC29Z7PMIxi5I,2163
146
+ smftools/preprocessing/filter_adata_by_nan_proportion.py,sha256=5V1PNJISYm92QtEGmS9XSqx456Ult8RY8LMBclNylno,1490
147
+ smftools/preprocessing/filter_reads_on_length_quality_mapping.py,sha256=83G8ovetiAmh8EbikqAUhNnzaX_KnWe0rZ7vfrgeye4,8018
148
+ smftools/preprocessing/filter_reads_on_modification_thresholds.py,sha256=yxYZB9Ran1ZxuZm9iHi5bpLo6xcro5zKyv9rnYUtT6g,21688
149
+ smftools/preprocessing/flag_duplicate_reads.py,sha256=7MooUKnUULJY6IiCNO7P0idE7_6X0usMtX7F9us8n4U,75420
150
+ smftools/preprocessing/invert_adata.py,sha256=-aiidr_PXSf8IIpC4PMRm2RlLAWi-dtZDpr0iSOY-PY,1367
151
+ smftools/preprocessing/load_sample_sheet.py,sha256=rzY76rCYVf3idu2ZRw4pEjVRBB5AyUkSYY-UzpmE_aw,2193
152
+ smftools/preprocessing/make_dirs.py,sha256=SjeiXoWsy_SldM-RoQbpfo2mXdnP78xhHVHywTD7IZI,662
153
+ smftools/preprocessing/min_non_diagonal.py,sha256=2sOWl7zKWltNmv-Jv-ZXb099dYBX28suAOE6DUlUO-U,749
154
+ smftools/preprocessing/recipes.py,sha256=2IcPTSaiZb5_heWPxFsp5t6wqrCT-66zSQN6TI8S6jI,7169
155
+ smftools/preprocessing/reindex_references_adata.py,sha256=9d7Lm1za0wztSaUVAMzbhVn-TCHeJXNLoLx3F6FNNJQ,3658
156
+ smftools/preprocessing/subsample_adata.py,sha256=G9tCpDw5mZ-W4oKgjZr_kXy9CGnnzVmchtQ8WLQYSc8,2525
157
+ smftools/preprocessing/archived/add_read_length_and_mapping_qc.py,sha256=OPLoxI17sg5revcaZ50KbPgLGO6ZCaGjychSHwQyd9U,5736
158
+ smftools/preprocessing/archived/calculate_complexity.py,sha256=fnaudGVLZPE-1dissVw3l5CAj5zUyOYzjU8Xb81DLL4,3456
159
+ smftools/preprocessing/archived/mark_duplicates.py,sha256=Acj27Xc8ht8e1HYZFgq57z7yLZi-IUAxHqqg8xRuZeE,8783
160
+ smftools/preprocessing/archived/preprocessing.py,sha256=l0Im9O45kaMYxipyFiPFBA8M7NLiOxWuONf8igmHaPc,34567
161
+ smftools/preprocessing/archived/remove_duplicates.py,sha256=W1Y2ufD2nE9Tnx3NXpEPxso08tiV50iRy77_X3RZkyQ,735
162
+ smftools/schema/__init__.py,sha256=0chkz2Zc3UKSJO4m0MUemfs-WjGUSSghiuuFM28UvsY,293
163
+ smftools/schema/anndata_schema_v1.yaml,sha256=uNFTrsTLNoE3kgJgrcg-hM6iYtDRsu6SHwWCkbcgIuk,7746
164
+ smftools/tools/__init__.py,sha256=MqvwhrFQsTvoSpbJ4HIzV9LWwNLef0RXe9iI3VZReMI,976
165
+ smftools/tools/calculate_umap.py,sha256=oj4EJP4M3cZ50T0bYNVAfZAssEG9ZxKmNgjgKmqxf-g,3594
166
+ smftools/tools/cluster_adata_on_methylation.py,sha256=NsU11zFyBB_TZFdVZxjqeSZsiVZgb8iCXaOBY54FA9U,7684
167
+ smftools/tools/general_tools.py,sha256=XO8em-clV4onfbYEH6JTfNj3svLQnwBZ1Tja7s8qsXg,3260
168
+ smftools/tools/position_stats.py,sha256=FiFidt3b5cdEMylFoPPrCZbLAXQHsehxFFcTaHvTtt4,27425
169
+ smftools/tools/read_stats.py,sha256=8rV2BXymdPuPihh0Ev-HqPT40lobyt5WExoYjbmrbcI,6534
170
+ smftools/tools/spatial_autocorrelation.py,sha256=euunec6Mmkm5iBDN7TM4q4NXLl9n8UP77-6GSGYCVOk,25473
171
+ smftools/tools/subset_adata.py,sha256=6xPf6hyKcYwg4L2n0iCnz-Pl84fS4jLgxmD47J-OEco,1012
172
+ smftools/tools/archived/apply_hmm.py,sha256=b1DKT_02weiPgkfQ0_Zfk7wN8FRZAMeYvBe74H3QuDU,9357
173
+ smftools/tools/archived/classifiers.py,sha256=iKkK9UyEwEdNwLx-t_r52CURkP3iZ-pFwmQtXF_lnLY,42191
174
+ smftools/tools/archived/classify_methylated_features.py,sha256=uXWXl4t9cP4inRiSvL4MxGbwC2MxT5uT-D1FFdex8oE,2933
175
+ smftools/tools/archived/classify_non_methylated_features.py,sha256=vhfLbR5fqALps5HXxQ91x3lUTGLcfciaEsQkSFeLOgM,3292
176
+ smftools/tools/archived/subset_adata_v1.py,sha256=CBTbHolOil7m4eR0bwIzxS7ZPvo3hmDsPVZGUBzWYrs,1361
177
+ smftools/tools/archived/subset_adata_v2.py,sha256=npic7cuFIOeUiyRjATVrP4A0O7cV0EgHvRXi9aMMOcI,2311
178
+ smftools-0.3.0.dist-info/METADATA,sha256=JuAG9ifECVbhIjC2lKmIqgzosM1Ao2naUcmGh7zgpHk,7840
179
+ smftools-0.3.0.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
180
+ smftools-0.3.0.dist-info/entry_points.txt,sha256=q4hg4w-mKkI2leekM_-YZc5XRJzp96Mh1FcU3hac82g,52
181
+ smftools-0.3.0.dist-info/licenses/LICENSE,sha256=F8LwmL6vMPddaCt1z1S83Kh_OZv50alTlY7BvVx1RXw,1066
182
+ smftools-0.3.0.dist-info/RECORD,,
@@ -1,181 +0,0 @@
1
- smftools/__init__.py,sha256=8jiFf9PlbEL0Cc4vCPnnHs0Z-McGLEmW-o8d4sS77lQ,600
2
- smftools/_settings.py,sha256=Evw4Xu8RWt3YNglBjiHMdDA9LsS3xs4R3-lC-1GVxrw,382
3
- smftools/_version.py,sha256=Xsa3ayOMVkhUWm4t06YeyHE0apjpZefxLH4ylp0CDtU,22
4
- smftools/cli_entry.py,sha256=Q58mRi2dcVYMGPwMs_TmblGzRaHATozXLCEwYLR1TkQ,9684
5
- smftools/constants.py,sha256=SWOJ76KTP2p3geyVkNQ8LB96NOmDDtjFEur2hSw7iyU,1289
6
- smftools/logging_utils.py,sha256=jOptBgSW7NQcw7JTnw2-oWcN2qyrtfJkDpIZsfcU1Mk,1323
7
- smftools/metadata.py,sha256=yGTMof2hAUR43QfgRSwK9mnOiTAznV3Usxzsvt185s4,14898
8
- smftools/readwrite.py,sha256=GCCBAWXQezTtXMBr-2NeV-jJfdnl_yB_x5nuz7Bt11c,52413
9
- smftools/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
10
- smftools/cli/helpers.py,sha256=rPahev5NvuBoy9dWm51QHbAOLyOTApyUG0tWyY-21FM,1399
11
- smftools/cli/hmm_adata.py,sha256=u0JsQuvnErQxvA4SXzLXXiEfBa4Q4vlVC3oJbYg2PDo,40636
12
- smftools/cli/load_adata.py,sha256=y-vjuxnKzKhNDF9g0VwpDLsm9C03mp5ESOaRnPCI1M0,31518
13
- smftools/cli/preprocess_adata.py,sha256=j5nnTAN_mR-gHT6huEGTnUZ4EfRuZjRyuIZrR05AnJ0,22596
14
- smftools/cli/spatial_adata.py,sha256=_oI21L79nCl15LaXBQwk2W_Kda9aaR-Qvj5QDN2ccNw,31871
15
- smftools/cli/archived/cli_flows.py,sha256=xRiFUThoAL3LX1xdXaHVg4LjyJI4uNpGsc9aQ_wVCto,4941
16
- smftools/config/__init__.py,sha256=otyYipEb4ydJh9b9JDrtVl3AqqnZO77YPqDPskLfA2w,70
17
- smftools/config/conversion.yaml,sha256=N7lUO7-yAaJR6VhxRGCRc-ceAi0cp5xNASSIsXl9KwI,1242
18
- smftools/config/deaminase.yaml,sha256=JCE1nF39AX436-3RyvuZN24gdJfriDijNv5XNHrMT8I,1357
19
- smftools/config/default.yaml,sha256=xXprGKW3XcOGjSP9zKyfA6kFruwKTGErP_trPMRpghE,13709
20
- smftools/config/direct.yaml,sha256=Jw8Nj3QKQrCfJpVl8sGgCKdRvjk5cV66dzRlNfoDOzI,2269
21
- smftools/config/discover_input_files.py,sha256=NcOqNYoXggLDieam8UMJAc2sWmoYOZ_Wqp2mApnlBfs,4015
22
- smftools/config/experiment_config.py,sha256=3Z2tz46Lva_QgdFVPGhsVEpnE6GA13gB-IE8Bct3AUk,67215
23
- smftools/datasets/F1_hybrid_NKG2A_enhander_promoter_GpC_conversion_SMF.h5ad.gz,sha256=q6wJtgFRDln0o20XNCx1qad3lwcdCoylqPN7wskTfI8,2926497
24
- smftools/datasets/F1_sample_sheet.csv,sha256=9PodIIOXK2eamYPbC6DGnXdzgi9bRDovf296j1aM0ak,259
25
- smftools/datasets/__init__.py,sha256=BLdygs3q834wGKymizLMsJCWZijm-m4n3dIiDWMlkdM,121
26
- smftools/datasets/dCas9_m6A_invitro_kinetics.h5ad.gz,sha256=niOcVHaYY7h3XyvwSkN-V_NMBaRt2vTP5TrJO0CwMCs,8385050
27
- smftools/datasets/datasets.py,sha256=-VOdONP-K_ftLDtLktRKbq3S6vSB4pzRQ6VYBxAy_4A,1074
28
- smftools/hmm/HMM.py,sha256=5YTxzOMO2cgwLYvkdcdZs2C-lp_j-GbCAWyboCJSG2A,82249
29
- smftools/hmm/__init__.py,sha256=RebxmC6Xf9QUEXWqY7AZi7hX0z7BAm3Yz3akf5jSsTU,382
30
- smftools/hmm/call_hmm_peaks.py,sha256=uCq8UALn83zFsbPF5bIsjGAZEzNSOixRFYlcUUARAi8,13400
31
- smftools/hmm/display_hmm.py,sha256=lREb_e8-Ho5SdbPttfmZGXrXQFLjs6MVXt3lKgjei4M,1189
32
- smftools/hmm/hmm_readwrite.py,sha256=Kwh-MXI5jqqltPZ6uWQ5VYnoY9t0H39gBoOhdsq2nwI,497
33
- smftools/hmm/nucleosome_hmm_refinement.py,sha256=9w-QNpg5OuvPmDDQOjb5b8nQf3D7X4Ar-jp0VSk724g,6846
34
- smftools/hmm/archived/apply_hmm_batched.py,sha256=BBeJ8DiIuuMWzLwtDdk2DO2vvrfLCrVe4JtRYPFItIU,10648
35
- smftools/hmm/archived/calculate_distances.py,sha256=KDWimQ6u-coyxCKrbTm42Fh_Alf_gURBZ0vfFaem848,644
36
- smftools/hmm/archived/call_hmm_peaks.py,sha256=xpCmFLk7AoRHGDbebklwCz3aK4bQvy-bNqBeXFKkQxQ,5213
37
- smftools/hmm/archived/train_hmm.py,sha256=srzRcB9LEmNuHyBM0R5Z0VEnxecifQt-MoaJhADxGT8,2477
38
- smftools/informatics/__init__.py,sha256=PcMgCMfC6xKtT29cxTkMrDyfvhuZW2S6mF8fxb-GZpw,1288
39
- smftools/informatics/bam_functions.py,sha256=Rnnv-WTJb1cUptj0Pv774yJfRUrVs473U2iySPSp2vw,37657
40
- smftools/informatics/basecalling.py,sha256=aJ-8P6EHhkdaq-j37dRQy5EO7Z_j1pTMdwKfECtGU0c,3663
41
- smftools/informatics/bed_functions.py,sha256=pf_dYOb3I7N09NbvkEKmLenARzu0ODrd8SAsKubWjF4,13941
42
- smftools/informatics/binarize_converted_base_identities.py,sha256=KlpLjQyMr-bITaYr9t4PTZwkx9GjbHKQepJLaYUWexg,7813
43
- smftools/informatics/complement_base_list.py,sha256=f9k7fsztpswxtikFURNi-xZjcl3zRp_PoRyTdX1uqlg,535
44
- smftools/informatics/converted_BAM_to_adata.py,sha256=ssBmRVkwK-lZfgZ1MnSPq5p1yK6_jkZRVGC7La_dsMw,24209
45
- smftools/informatics/fasta_functions.py,sha256=zvBf9idZqa0x3LHfwfGXUxspqLJOda_6E0qCgWDyr-g,11290
46
- smftools/informatics/h5ad_functions.py,sha256=YCBMmXS7DAIKMLeE87PvQoObGXRrUyIED13j_SkNg78,12961
47
- smftools/informatics/modkit_extract_to_adata.py,sha256=CZo_sUp7c3OSdQIkuCfH9iQ-1wah-BFgnt2Yr7v3K54,63210
48
- smftools/informatics/modkit_functions.py,sha256=y1IbINUqy-XDKyQwPSIkAD0f-HBvr3IKIyjiS_I22IA,6067
49
- smftools/informatics/ohe.py,sha256=HHluIuV2ouNdS-ZZvVp7lUXM5roqsPx8nJwPFO4wNmE,5961
50
- smftools/informatics/pod5_functions.py,sha256=XfqSFMDTO_IouFePJKX_9nt9-lkcPLgJlzpW-tOk-nY,10246
51
- smftools/informatics/run_multiqc.py,sha256=M67HhO5FIJl8qn3Qc9YUlnbk7kdDWyYVL0B9SenrqMo,1115
52
- smftools/informatics/archived/bam_conversion.py,sha256=I8EzXjQixMmqx2oWnoNSH5NURBhfT-krbWHkoi_M964,3330
53
- smftools/informatics/archived/bam_direct.py,sha256=jbEFtUIiUR8Wlp3po_sWkr19AUNS9WZjglojb9j28vo,3606
54
- smftools/informatics/archived/basecall_pod5s.py,sha256=Ynmxscsxj6qp-zVY0RWodq513oDuHDaHnpqoepB3RUU,3930
55
- smftools/informatics/archived/basecalls_to_adata.py,sha256=-Nag6lr_NAtU4t8jo0GSMdgIAIfmDge-5VEUPQbEatE,3692
56
- smftools/informatics/archived/conversion_smf.py,sha256=QhlISVi3Z-XqFKyDG_CenLojovAt5-ZhuVe9hus36lg,7177
57
- smftools/informatics/archived/deaminase_smf.py,sha256=mNeg1mIYYVLIiW8powEpz0CqrGRDsrmY5-aoIgwMGHs,7221
58
- smftools/informatics/archived/direct_smf.py,sha256=ylPGFBvRLdxLHeDJjAwq98j8Q8_lfGK3k5JJnQxrwJw,7485
59
- smftools/informatics/archived/fast5_to_pod5.py,sha256=TRG_FYYGCGWUPzZCt0ZqzB8gQv_HKvkssp9nTctWzXU,1398
60
- smftools/informatics/archived/print_bam_query_seq.py,sha256=xjvz913GzUAqDuDOOjWYEuqBWCINTN234ze18lMjxgs,1004
61
- smftools/informatics/archived/subsample_fasta_from_bed.py,sha256=7YTKhXg_mtP4KWpnD-TB4nuFEL4crOa9_d84IJKllyQ,1633
62
- smftools/informatics/archived/subsample_pod5.py,sha256=zDw9tRcrFRmPI62xkcy9dh8IfsJcuYm7R-FVeBC_g3s,4701
63
- smftools/informatics/archived/helpers/archived/__init__.py,sha256=DiiBerFJAxZeG5y0ScpJSaVBJ8b4XWdfEJCh8Q7k8jU,2783
64
- smftools/informatics/archived/helpers/archived/align_and_sort_BAM.py,sha256=R12iefrBu1JyRhERRo-IBLM9uehQRyrldbgu7lQT3k4,5788
65
- smftools/informatics/archived/helpers/archived/aligned_BAM_to_bed.py,sha256=N3NAOaoSt_M4V48vtTP_m_iF1tRuNIPS_uNJ3Y0IA4E,3391
66
- smftools/informatics/archived/helpers/archived/bam_qc.py,sha256=r_NVoOnhDQp9sBOdLuqqSkR7rocSN0USOAcCfkBTtiQ,8482
67
- smftools/informatics/archived/helpers/archived/bed_to_bigwig.py,sha256=Bg9wFsavUU9Ha57n_99vYlYpVcbDUz3tLtYJ7ZFVR9k,2986
68
- smftools/informatics/archived/helpers/archived/canoncall.py,sha256=5WS6lwukc_xYTdPQy0OSj-WLbx0Rg70Cun1lCucY7w8,1741
69
- smftools/informatics/archived/helpers/archived/concatenate_fastqs_to_bam.py,sha256=chc4yyrwuZVQewSDMFLHmphs6JovAIak4jvmGwUdQNQ,10237
70
- smftools/informatics/archived/helpers/archived/converted_BAM_to_adata.py,sha256=sRmOtn0kNosLYfogqslDHg1Azk51l6nfNOLgQOnQjlA,14591
71
- smftools/informatics/archived/helpers/archived/count_aligned_reads.py,sha256=ZF_kkzAf1RvM4PwDYhxD36UiuVuMM_MBvZgiXom1NQ0,2176
72
- smftools/informatics/archived/helpers/archived/demux_and_index_BAM.py,sha256=KmU7nqGQ-MfDrp8h3txbToGn4h95Rkvg0WEiuext-vY,2000
73
- smftools/informatics/archived/helpers/archived/extract_base_identities.py,sha256=CaFqNBjkDujYlyiUnOeRock1OQWs3CeiD3yTL96sjIs,3043
74
- smftools/informatics/archived/helpers/archived/extract_mods.py,sha256=Mrs7mrLFgCTiRGfPFSyvJm6brq--LGzZrNDiFB-jynI,3895
75
- smftools/informatics/archived/helpers/archived/extract_read_features_from_bam.py,sha256=SYAb4Q1HxiJzCx5bIz86MdH_TvVPsRAVodZD9082HGY,1491
76
- smftools/informatics/archived/helpers/archived/extract_read_lengths_from_bed.py,sha256=Cw39wgp1eBTV45Wk1l0c9l-upBW5N2OcgyWXTAXln90,678
77
- smftools/informatics/archived/helpers/archived/extract_readnames_from_BAM.py,sha256=3FxSNqbZ1VsOK2RfHrvevQTzhWATf5E8bZ5yVOqayvk,759
78
- smftools/informatics/archived/helpers/archived/find_conversion_sites.py,sha256=JPlDipmzeCBkV_T6esGD5ptwmbQmk8gJMTh7NMaSYd4,2480
79
- smftools/informatics/archived/helpers/archived/generate_converted_FASTA.py,sha256=Us6iH1cIhsXDnTvDxI-FEHB6ndbB30hd1ss-9dIoWVE,3819
80
- smftools/informatics/archived/helpers/archived/get_chromosome_lengths.py,sha256=BEroXshYSpjf5wt_vrEAFiTJmSuf-kvD-Z1B_1gusME,1000
81
- smftools/informatics/archived/helpers/archived/get_native_references.py,sha256=fRuyEm9UJkfd5DwHmFb1bxEtNvtSI1_BxGRmrCymGkw,981
82
- smftools/informatics/archived/helpers/archived/index_fasta.py,sha256=w6xHFSaoXVk-YWZWftZ9Xv8rywZ_IuuIouLQ12KL3ro,779
83
- smftools/informatics/archived/helpers/archived/informatics.py,sha256=gKb2ZJ_LcAeEXuQqn9e-QDF_sS4tMpMTr2vZlqa7n54,14572
84
- smftools/informatics/archived/helpers/archived/load_adata.py,sha256=i3aYVqp_aFQFa2ZXazw16HdJ9ExE0LzhyLMXKxJGxnA,33711
85
- smftools/informatics/archived/helpers/archived/make_modbed.py,sha256=Wh0UCSOL4fMZbWYK-3oGGHwJtqPurJ3Bl6wJWBaTXoM,923
86
- smftools/informatics/archived/helpers/archived/modQC.py,sha256=pz2EscFgO-j-9dfNgNDseweXXqM5-a-Rj2abBLErLd0,1051
87
- smftools/informatics/archived/helpers/archived/modcall.py,sha256=LVPrdMNVp2gyQTJ4BNp8NJNm89AueDjsKaY7Gqkluho,1777
88
- smftools/informatics/archived/helpers/archived/ohe_batching.py,sha256=QVOiyl9fYHNIFWM23afYnQo0uaOjf1NR3ASKGVSrmuw,2975
89
- smftools/informatics/archived/helpers/archived/ohe_layers_decode.py,sha256=gIgUC9L8TFLi-fTnjR4PRzXdUaH5D6WL2Hump6XOoy0,1042
90
- smftools/informatics/archived/helpers/archived/one_hot_decode.py,sha256=3n4rzY8_aC9YKmgrftsguMsH7fUyQ-DbWmrOYF6la9s,906
91
- smftools/informatics/archived/helpers/archived/one_hot_encode.py,sha256=5hHigA6-SZLK84WH_RHo06F_6aTg7S3TJgvSr8gxGX8,1968
92
- smftools/informatics/archived/helpers/archived/plot_bed_histograms.py,sha256=zNfnn10toHtNtYKRhfHwiRCp8QeSMewNA7S-srrh5M8,10030
93
- smftools/informatics/archived/helpers/archived/separate_bam_by_bc.py,sha256=pCLev0OQji1jBdVr25lI_gt9fsozSG8vh7TQkE_UHnY,1800
94
- smftools/informatics/archived/helpers/archived/split_and_index_BAM.py,sha256=Q7I5qJ5JjW6mSKysfl9NdlFZ6LIy3C8G5rGmG7cn2eA,1224
95
- smftools/machine_learning/__init__.py,sha256=4Ezt1FLkH1RcbIDUn3kv3EE6hTLR_u4Ot8rqVxB1thQ,193
96
- smftools/machine_learning/data/__init__.py,sha256=xbfLE-gNjdgxvZ9LKTdvjAtbIHOcs2TR0Gz3YRFbo38,113
97
- smftools/machine_learning/data/anndata_data_module.py,sha256=onEflCeAHHs9IYDpoue_2NgDFoMBmzfN-dD-gPNSs0Y,10743
98
- smftools/machine_learning/data/preprocessing.py,sha256=ugujhNYEdoQSj2J3dU-49-DOI9sB8eFZcKKPe7xy9Ec,139
99
- smftools/machine_learning/evaluation/__init__.py,sha256=UBNFTIVZWfQIPOx16tcvnnoFR5kK5a-HwwS5CaG5rYQ,123
100
- smftools/machine_learning/evaluation/eval_utils.py,sha256=mvt2aiRjDEWgODoez0t9dx4f9RcxwPSx77n0XE2X-90,1000
101
- smftools/machine_learning/evaluation/evaluators.py,sha256=vWDgOg8CcpTqfXdNidzDIxbRC15g_7F3Cz46wdR0QYc,8278
102
- smftools/machine_learning/inference/__init__.py,sha256=qjRDR-MmnwaZLKH76vWW9Yy5P5g92Kz8LqswBZSRU8U,173
103
- smftools/machine_learning/inference/inference_utils.py,sha256=zZjz-tYk8SsfGFtcVvWCI98bIi7V94hGyU6YBfs9X8Q,950
104
- smftools/machine_learning/inference/lightning_inference.py,sha256=_yl4xFLlbxuBWl76y85pJOAX8vF7JW4NGzGcWAG2aXc,2113
105
- smftools/machine_learning/inference/sklearn_inference.py,sha256=DsZA30s9DE6neO3QpkJ3oAlMBpWq240BQgQ2r6knb8s,1608
106
- smftools/machine_learning/inference/sliding_window_inference.py,sha256=cc2frAMpcZx6lNnc0F8DdgXGuAhODWuIXyB8Ovo0vCQ,4429
107
- smftools/machine_learning/models/__init__.py,sha256=YxevQ9kUkU-eU0NvgDfnYLbGryFmAEa6rVbgpzN9_Xk,443
108
- smftools/machine_learning/models/base.py,sha256=oSUolrdzDoTvKOWmQ4e1HGMWoFEyw86_m9Ls7ZidHjw,9416
109
- smftools/machine_learning/models/cnn.py,sha256=bJSJhWp67tHRIb-BRALKdPtoc2qtwUZedNX4M3r0jjw,4458
110
- smftools/machine_learning/models/lightning_base.py,sha256=v8PwJ222jNoKw2fXAqimsoZb8Srme56IHQvosC5Da0g,14041
111
- smftools/machine_learning/models/mlp.py,sha256=YM0JvU5408-sETuF-Xq07VCIR10DvzvT_q7JhA9NpaM,869
112
- smftools/machine_learning/models/positional.py,sha256=LHtmCMVeYfbEFDMZCADOKQ_VWKpw4eaWV43rp_3CozY,655
113
- smftools/machine_learning/models/rnn.py,sha256=3Q1NVdzW60JBtNJRHm2k4aI818u5or6gqYCZn-o9x3Y,707
114
- smftools/machine_learning/models/sklearn_models.py,sha256=xxgwWrE5-f8xmaxBM4wZzm8Gc8wh38k2CLspv9vR8J0,10478
115
- smftools/machine_learning/models/transformer.py,sha256=dc0viuNLdEyztqfdyz11mpfbAhb94hGl8dr9epZByJU,10833
116
- smftools/machine_learning/models/wrappers.py,sha256=wLQ111UcqX4KCyIHVyCSJFtdlHMSJH1yTgLeFiPAODo,699
117
- smftools/machine_learning/training/__init__.py,sha256=WMUuPDR7IXAAb8_OdPLbSPVfOzepSLTFU5Lf7V6-aR8,186
118
- smftools/machine_learning/training/train_lightning_model.py,sha256=ETfrhOD7CEmYMz9GpCZX9pUeKvzrNmdLwDiDhQEDlzc,4167
119
- smftools/machine_learning/training/train_sklearn_model.py,sha256=tjxX9FjVzSmKzHl-1fVGKhTLEycnKTBVJg59WE_6QfQ,3111
120
- smftools/machine_learning/utils/__init__.py,sha256=U7ShlZeKr-6UyHnJappmj7z5_n3-DG_vZcF3Y-PZCFw,63
121
- smftools/machine_learning/utils/device.py,sha256=aOMqr6TCEoafY2YqDLm4p7Gt4IcxuNc78FiSQfeCWf8,292
122
- smftools/machine_learning/utils/grl.py,sha256=ObrQtnAGQv6iit1rXIFA_GkG3v9gh9brL4GfDIGOR0o,337
123
- smftools/plotting/__init__.py,sha256=TL7pnSSe7PCgnHp-HJRG0X6JRh4pbMVu67__xoTyTno,927
124
- smftools/plotting/autocorrelation_plotting.py,sha256=SfZBIu9ETYO5LVMwVRhxCNwnEfUJVszjP-3CDK9YkH8,30209
125
- smftools/plotting/classifiers.py,sha256=IoYFklpv7DjrSFr4QWotSQlOMIJdiQkYC4BWuraS_og,16241
126
- smftools/plotting/general_plotting.py,sha256=zaQ04MrU7-MwSYpEoL9is7dyXme3xKjcECnKwStUdDE,69266
127
- smftools/plotting/hmm_plotting.py,sha256=vF0LTjWG6nWWfwh9tQLtOhF9hQEvy9dwObFdfSRgvyA,11427
128
- smftools/plotting/position_stats.py,sha256=6boL2UWA-FrjCHHJ7RWtxWggzbOPycnXlaCTJMrTpIM,18863
129
- smftools/plotting/qc_plotting.py,sha256=MYlvvdk-Gn75eMEqizqj9wN25IjaNqqWoP1c1gX8raE,10233
130
- smftools/preprocessing/__init__.py,sha256=r3fENr6W1CGgtC1Cd_c2qYRZjh0exrLYGRDUGJVp9so,1639
131
- smftools/preprocessing/append_base_context.py,sha256=Z18Izb9-gZ4_ifXOHFZqcmPOradjCiyJZMZ5oTDfiLQ,7102
132
- smftools/preprocessing/append_binary_layer_by_base_context.py,sha256=7mFG7xjAPgm_60AcdCnnjJZK5gJe4VuLohopkrAHmvQ,7640
133
- smftools/preprocessing/binarize.py,sha256=eDFLybKKIF2wcrtN3JWVjeGXSUayezxLhX76UllAhVc,888
134
- smftools/preprocessing/binarize_on_Youden.py,sha256=JTHosTDy9-gJ0bPrHkGnz_Ao_AeE8IiutqFA6MksdM8,4887
135
- smftools/preprocessing/binary_layers_to_ohe.py,sha256=aR9Th60oFa0lBrYwrhGqg53eLmgGsnXtGx2MrB80Z8E,1896
136
- smftools/preprocessing/calculate_complexity_II.py,sha256=AztSgw5BRDc_XYZNhk-Z3uu4TFIAvtqMUyulm1PFqRk,10270
137
- smftools/preprocessing/calculate_consensus.py,sha256=1_-ldkwQ3JT5Rns9thIfV-HJbSKFW2b1Auida96lhGE,2377
138
- smftools/preprocessing/calculate_coverage.py,sha256=HZ8rtEmb-z6XCr-EvMfl4rc_9nbTJRztyEk8xUg7feE,2777
139
- smftools/preprocessing/calculate_pairwise_differences.py,sha256=MmbjlVbvV0P5qDLfA2qEa05Ke00086k69UZx7cBaRrk,1763
140
- smftools/preprocessing/calculate_pairwise_hamming_distances.py,sha256=86CzKTjpuJa_QEjkLVeOBCnMJWEmBYZcK6Ztzt70k_U,962
141
- smftools/preprocessing/calculate_position_Youden.py,sha256=7p6mK2k-f4dP4VCr-UpCexiY5Q-AtOPQKVsVk5gUCwc,8913
142
- smftools/preprocessing/calculate_read_length_stats.py,sha256=y2R5lU6ObRBCAhSHKLEZYpgm88woPd9d15NWVthIi_A,4790
143
- smftools/preprocessing/calculate_read_modification_stats.py,sha256=L1X0LatpjPI5wA1j7MjFgukePYGo75DcgJCYPlhVAGM,5319
144
- smftools/preprocessing/clean_NaN.py,sha256=hrPhbKfqDpSiXLXXJxvcmtwqFhOecJVC29Z7PMIxi5I,2163
145
- smftools/preprocessing/filter_adata_by_nan_proportion.py,sha256=5V1PNJISYm92QtEGmS9XSqx456Ult8RY8LMBclNylno,1490
146
- smftools/preprocessing/filter_reads_on_length_quality_mapping.py,sha256=LYO-tiCNImPGvVbqNmVy_KvmmOmG4Ln11BsAF_T9xK0,7982
147
- smftools/preprocessing/filter_reads_on_modification_thresholds.py,sha256=kuqUUwdEOZBGCjPN9IrT1qyksyS2v5moijba2Exn-2I,21652
148
- smftools/preprocessing/flag_duplicate_reads.py,sha256=DEL6rRaPTsjAgwjrtW5DBUUWJVwFoiKsPY5rZ2ElAyM,75538
149
- smftools/preprocessing/invert_adata.py,sha256=-aiidr_PXSf8IIpC4PMRm2RlLAWi-dtZDpr0iSOY-PY,1367
150
- smftools/preprocessing/load_sample_sheet.py,sha256=rzY76rCYVf3idu2ZRw4pEjVRBB5AyUkSYY-UzpmE_aw,2193
151
- smftools/preprocessing/make_dirs.py,sha256=IOrvfPzC-1AK_G9dB8tthxDDZLWYy1OdfEaKoYDoC7Q,627
152
- smftools/preprocessing/min_non_diagonal.py,sha256=KT0uNdnH0D7qOhe_Ce2oDIyGowOF4kJSZW1kShVfREE,713
153
- smftools/preprocessing/recipes.py,sha256=pkVbVCdVWHE5P-CIGmlWTVkRMLFUL0d8XQi9jdjxdQw,7133
154
- smftools/preprocessing/reindex_references_adata.py,sha256=9d7Lm1za0wztSaUVAMzbhVn-TCHeJXNLoLx3F6FNNJQ,3658
155
- smftools/preprocessing/subsample_adata.py,sha256=G9tCpDw5mZ-W4oKgjZr_kXy9CGnnzVmchtQ8WLQYSc8,2525
156
- smftools/preprocessing/archived/add_read_length_and_mapping_qc.py,sha256=zD_Kxw3DvyOypfuSMGv0ESyt-02w4XlAAMqQxb7yDNQ,5700
157
- smftools/preprocessing/archived/calculate_complexity.py,sha256=hJu3XjlFoEa1xdij9ENCxUIfB_xjenSlzXua4NafVtc,3420
158
- smftools/preprocessing/archived/mark_duplicates.py,sha256=kwfstcWb7KkqeNB321dB-NLe8yd9_hZsSmpL8pCVBQg,8747
159
- smftools/preprocessing/archived/preprocessing.py,sha256=akR1TFBix50v3Ic1va_eg9uaJM6NNMnbqxDp0JchCgg,34531
160
- smftools/preprocessing/archived/remove_duplicates.py,sha256=Erooi5_1VOUNfWpzddzmMNYMCl1U1jJryt7ZtMhabAs,699
161
- smftools/schema/__init__.py,sha256=0chkz2Zc3UKSJO4m0MUemfs-WjGUSSghiuuFM28UvsY,293
162
- smftools/schema/anndata_schema_v1.yaml,sha256=uNFTrsTLNoE3kgJgrcg-hM6iYtDRsu6SHwWCkbcgIuk,7746
163
- smftools/tools/__init__.py,sha256=BVP42AJXiy7xu-VDzGStEdmE2_Zx6FLKsrwmli4TeRI,719
164
- smftools/tools/calculate_umap.py,sha256=NtUNASqT3qNyQEh0DB4aar2-0EdU6-kSQt9uzI-FJF4,3500
165
- smftools/tools/cluster_adata_on_methylation.py,sha256=tIzBI1FhH67aYevCzLBD18EHAQOEotKOLvLnnXVoTz8,7434
166
- smftools/tools/general_tools.py,sha256=XO8em-clV4onfbYEH6JTfNj3svLQnwBZ1Tja7s8qsXg,3260
167
- smftools/tools/position_stats.py,sha256=JBtMDVW39LgXjI7o29OVAlEzjUerXzoDp0R66z55rhk,27439
168
- smftools/tools/read_stats.py,sha256=8rV2BXymdPuPihh0Ev-HqPT40lobyt5WExoYjbmrbcI,6534
169
- smftools/tools/spatial_autocorrelation.py,sha256=euunec6Mmkm5iBDN7TM4q4NXLl9n8UP77-6GSGYCVOk,25473
170
- smftools/tools/subset_adata.py,sha256=6xPf6hyKcYwg4L2n0iCnz-Pl84fS4jLgxmD47J-OEco,1012
171
- smftools/tools/archived/apply_hmm.py,sha256=pJXCULay0zbmubrwql368y7yiHAZr2bJhuGx2QUuKnE,9321
172
- smftools/tools/archived/classifiers.py,sha256=9bYlmVhRSXiDtbOot9_d_Gyvd1gDDSvWatUT_Di-MXs,42155
173
- smftools/tools/archived/classify_methylated_features.py,sha256=Z0N2UKw3luD3CTQ8wcUvdnMY7w-8574OJbEcwzNsy88,2897
174
- smftools/tools/archived/classify_non_methylated_features.py,sha256=IJERTozEs7IPL7K-VIjq2q2K36wRCW9iiNSYLAXasrA,3256
175
- smftools/tools/archived/subset_adata_v1.py,sha256=3e3689017Utixt61sQiXEGS_FGmevROH6F7W2Lcrb_s,1325
176
- smftools/tools/archived/subset_adata_v2.py,sha256=Lno9ORj_Dqg5tmkm2P3XYoIbNkul9bztsCIXG2e3fkI,2275
177
- smftools-0.2.5.dist-info/METADATA,sha256=lYaQpGcNnCiVBfwMyIjZ0sm7m6c0k6h_YZay08M-oRw,6168
178
- smftools-0.2.5.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
179
- smftools-0.2.5.dist-info/entry_points.txt,sha256=q4hg4w-mKkI2leekM_-YZc5XRJzp96Mh1FcU3hac82g,52
180
- smftools-0.2.5.dist-info/licenses/LICENSE,sha256=F8LwmL6vMPddaCt1z1S83Kh_OZv50alTlY7BvVx1RXw,1066
181
- smftools-0.2.5.dist-info/RECORD,,