small-fish-gui 1.3.3__py3-none-any.whl → 1.3.4__py3-none-any.whl

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Files changed (6) hide show
  1. small_fish_gui/__init__.py +1 -1
  2. small_fish_gui/pipeline/_napari_wrapper.py +3 -2
  3. {small_fish_gui-1.3.3.dist-info → small_fish_gui-1.3.4.dist-info}/METADATA +1 -1
  4. {small_fish_gui-1.3.3.dist-info → small_fish_gui-1.3.4.dist-info}/RECORD +6 -6
  5. {small_fish_gui-1.3.3.dist-info → small_fish_gui-1.3.4.dist-info}/WHEEL +0 -0
  6. {small_fish_gui-1.3.3.dist-info → small_fish_gui-1.3.4.dist-info}/licenses/LICENSE +0 -0
small_fish_gui/__init__.py CHANGED
@@ -38,4 +38,4 @@ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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  """
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- __version__ = "1.3.3"
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+ __version__ = "1.3.4"
small_fish_gui/pipeline/_napari_wrapper.py CHANGED
@@ -199,19 +199,20 @@ def threshold_selection(
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  """
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  Viewer = napari.Viewer(title= "Small fish - Threshold selector", ndisplay=2, show=True)
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+ scale = compute_anisotropy_coef(voxel_size)
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  Viewer.add_image(
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  data= image,
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  contrast_limits= [image.min(), image.max()],
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  name= "raw signal",
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  colormap= 'green',
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- scale= voxel_size,
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+ scale= scale,
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  blending= 'additive'
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  )
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  Viewer.add_image(
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  data= filtered_image,
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  contrast_limits= [filtered_image.min(), filtered_image.max()],
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  colormap= 'gray',
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- scale=voxel_size,
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+ scale=scale,
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  blending='additive'
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  )
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{small_fish_gui-1.3.3.dist-info → small_fish_gui-1.3.4.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: small_fish_gui
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- Version: 1.3.3
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+ Version: 1.3.4
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  Summary: Small Fish is a python application for the analysis of smFish images. It provides a ready to use graphical interface to combine famous python packages for cell analysis without any need for coding.
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  Project-URL: Homepage, https://github.com/2Echoes/small_fish
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  Project-URL: Issues, https://github.com/2Echoes/small_fish/issues
{small_fish_gui-1.3.3.dist-info → small_fish_gui-1.3.4.dist-info}/RECORD RENAMED
@@ -1,7 +1,7 @@
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  small_fish_gui/LICENSE,sha256=-iFy8VGBYs5VsHglKpk4D-hxqQ2jMJaqmfq_ulIzDks,1303
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  small_fish_gui/README.md,sha256=2c_homYDJXX6VsBiEs5obhBh3HpcTSMdyjLo-35WzE4,4062
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  small_fish_gui/Segmentation example.jpg,sha256=opfiSbjmfF6z8kBs08sg_FNR2Om0AcMPU5sSwSLHdoQ,215038
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- small_fish_gui/__init__.py,sha256=-EmCkHocthrnAlwtuVXQuTc3AOcXiAOBYAK3wVmqe8w,1941
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+ small_fish_gui/__init__.py,sha256=KVhqTYGlC9toeQXTEcEWF5cevZ7sRbIEDHZ8ZM98XOk,1941
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  small_fish_gui/__main__.py,sha256=EzSCoJ7jpSdK-QbzUwQLGZeQWjybNeq8VnCBucA8MZw,1372
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  small_fish_gui/napari_detection_example.png,sha256=l5EZlrbXemLiGqb5inSVsD6Kko1Opz528-go-fBfrw8,977350
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  small_fish_gui/requirements.txt,sha256=9OMfUAnLdHevq6w_fVoDmVmkSMJeFofkOK_86_fu9C0,321
@@ -23,7 +23,7 @@ small_fish_gui/interface/parameters.py,sha256=lUugD-4W2TZyJF3TH1q70TlktEYhhPtcPC
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  small_fish_gui/interface/testing.py,sha256=MY5-GcPOUHagcrwR8A7QOjAmjZIDVC8Wz3NibLe3KQw,321
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  small_fish_gui/pipeline/_colocalisation.py,sha256=peBw2Qz5m6wSejDkDz240UgvWl8ohNelrnmEgznbEsw,9635
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  small_fish_gui/pipeline/_custom_errors.py,sha256=tQ-AUhgzIFpK30AZiQQrtHCHyGVRDdAoIjzL0Fk-1pA,43
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- small_fish_gui/pipeline/_napari_wrapper.py,sha256=z5WEOlOKP-vhdawjPcfUAv3scGCilGu0UCHuSf6GCQY,9252
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+ small_fish_gui/pipeline/_napari_wrapper.py,sha256=_FkkY7IBKn1QgNvyea-x6XPjw_AwsLEVzdRKzg65oCE,9290
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  small_fish_gui/pipeline/_preprocess.py,sha256=szNoav19Xo3USmiUTjcFgkMn9QK53ZOydbLV5aMFLws,10676
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  small_fish_gui/pipeline/_segmentation.py,sha256=M2bQzgzw7Zt_DBeM3qvI0V4Pn0HFLwj0l8yV8M5aToo,12977
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  small_fish_gui/pipeline/_signaltonoise.py,sha256=7A9t7xu7zghI6cr201Ldm-LjJ5NOuP56VSeJ8KIzcUo,8497
@@ -32,7 +32,7 @@ small_fish_gui/pipeline/detection.py,sha256=MLc8Z1xniuAghn3D0LPmH64jVRobhLj05HW0
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  small_fish_gui/pipeline/main.py,sha256=AAW-zK3b7Ece9cdHn9y6QG8lTa1HXG-8JtnvJ3m0HwA,3149
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  small_fish_gui/pipeline/spots.py,sha256=yHvqf1eD25UltELpzcouYXhLkxiXI_mOL1ANSzXK5pw,1907
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  small_fish_gui/pipeline/test.py,sha256=w4ZMGDmUDXxVgWTlZ2TKw19W8q5gcE9gLMKe0SWnRrw,2827
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- small_fish_gui-1.3.3.dist-info/METADATA,sha256=hEW1l9WpymJMLiWzuwbcDSZ5K653ZQNle5kqilyDSJ8,2567
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- small_fish_gui-1.3.3.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
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- small_fish_gui-1.3.3.dist-info/licenses/LICENSE,sha256=-iFy8VGBYs5VsHglKpk4D-hxqQ2jMJaqmfq_ulIzDks,1303
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- small_fish_gui-1.3.3.dist-info/RECORD,,
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+ small_fish_gui-1.3.4.dist-info/METADATA,sha256=j18MEZEpw6WbHgnNUfWlsBLuTTlh6fUwCZ43ztNH2eE,2567
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+ small_fish_gui-1.3.4.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
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+ small_fish_gui-1.3.4.dist-info/licenses/LICENSE,sha256=-iFy8VGBYs5VsHglKpk4D-hxqQ2jMJaqmfq_ulIzDks,1303
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+ small_fish_gui-1.3.4.dist-info/RECORD,,