small-fish-gui 1.3.2__py3-none-any.whl → 1.3.4__py3-none-any.whl

small_fish_gui/__init__.py

@@ -38,4 +38,4 @@ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 """
-__version__ = "1.3.2"
+__version__ = "1.3.4"

small_fish_gui/pipeline/_napari_wrapper.py

@@ -199,19 +199,20 @@ def threshold_selection(
     """
     
     Viewer = napari.Viewer(title= "Small fish - Threshold selector", ndisplay=2, show=True)
+    scale = compute_anisotropy_coef(voxel_size)
     Viewer.add_image(
         data= image,
         contrast_limits= [image.min(), image.max()],
         name= "raw signal",
         colormap= 'green',
-        scale= voxel_size,
+        scale= scale,
         blending= 'additive'
     )
     Viewer.add_image(
         data= filtered_image,
         contrast_limits= [filtered_image.min(), filtered_image.max()],
         colormap= 'gray',
-        scale=voxel_size,
+        scale=scale,
         blending='additive'
     )
 

small_fish_gui/pipeline/detection.py

@@ -327,8 +327,8 @@ def _launch_detection(image, image_input_values: dict) :
             logfiltered_image=filtered_image,
             local_maxima=local_maxima,
             default=threshold,
-            min=filtered_image[local_maxima].min(),
-            max=filtered_image[local_maxima].max(),
+            min_value=filtered_image[local_maxima].min(),
+            max_value=filtered_image[local_maxima].max(),
             voxel_size=voxel_size
         )
 
@@ -752,11 +752,12 @@ def _create_threshold_slider(
 ) :
     
     if isinstance(default, float) : default = round(default)
-    min_value = max(min_value,25) #Security to avoid user put too low threshold and crashes Napari if out of memory.
+    min_value = max(min_value,15) #Security to avoid user put too low threshold and crashes Napari if out of memory.
 
     @magicgui(
-        threshold={'widget_type' : 'Slider', 'value' : default, 'min' : min_value, 'max' : max_value},
-        auto_call=True
+        threshold={'widget_type' : 'Slider', 'value' : default, 'min' : min_value, 'max' : max_value, 'tracking' : True,},
+        auto_call=False,
+        call_button= "Apply"
     )
     def threshold_slider(threshold: int) -> LayerDataTuple:
         spots = detection.spots_thresholding(

{small_fish_gui-1.3.2.dist-info → small_fish_gui-1.3.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: small_fish_gui
-Version: 1.3.2
+Version: 1.3.4
 Summary: Small Fish is a python application for the analysis of smFish images. It provides a ready to use graphical interface to combine famous python packages for cell analysis without any need for coding.
 Project-URL: Homepage, https://github.com/2Echoes/small_fish
 Project-URL: Issues, https://github.com/2Echoes/small_fish/issues

{small_fish_gui-1.3.2.dist-info → small_fish_gui-1.3.4.dist-info}/RECORD

@@ -1,7 +1,7 @@
 small_fish_gui/LICENSE,sha256=-iFy8VGBYs5VsHglKpk4D-hxqQ2jMJaqmfq_ulIzDks,1303
 small_fish_gui/README.md,sha256=2c_homYDJXX6VsBiEs5obhBh3HpcTSMdyjLo-35WzE4,4062
 small_fish_gui/Segmentation example.jpg,sha256=opfiSbjmfF6z8kBs08sg_FNR2Om0AcMPU5sSwSLHdoQ,215038
-small_fish_gui/__init__.py,sha256=vkwvswdFQp7_sDx7QOu5MxeKGSCJMZHIKohFa9CmaTI,1941
+small_fish_gui/__init__.py,sha256=KVhqTYGlC9toeQXTEcEWF5cevZ7sRbIEDHZ8ZM98XOk,1941
 small_fish_gui/__main__.py,sha256=EzSCoJ7jpSdK-QbzUwQLGZeQWjybNeq8VnCBucA8MZw,1372
 small_fish_gui/napari_detection_example.png,sha256=l5EZlrbXemLiGqb5inSVsD6Kko1Opz528-go-fBfrw8,977350
 small_fish_gui/requirements.txt,sha256=9OMfUAnLdHevq6w_fVoDmVmkSMJeFofkOK_86_fu9C0,321
@@ -23,16 +23,16 @@ small_fish_gui/interface/parameters.py,sha256=lUugD-4W2TZyJF3TH1q70TlktEYhhPtcPC
 small_fish_gui/interface/testing.py,sha256=MY5-GcPOUHagcrwR8A7QOjAmjZIDVC8Wz3NibLe3KQw,321
 small_fish_gui/pipeline/_colocalisation.py,sha256=peBw2Qz5m6wSejDkDz240UgvWl8ohNelrnmEgznbEsw,9635
 small_fish_gui/pipeline/_custom_errors.py,sha256=tQ-AUhgzIFpK30AZiQQrtHCHyGVRDdAoIjzL0Fk-1pA,43
-small_fish_gui/pipeline/_napari_wrapper.py,sha256=z5WEOlOKP-vhdawjPcfUAv3scGCilGu0UCHuSf6GCQY,9252
+small_fish_gui/pipeline/_napari_wrapper.py,sha256=_FkkY7IBKn1QgNvyea-x6XPjw_AwsLEVzdRKzg65oCE,9290
 small_fish_gui/pipeline/_preprocess.py,sha256=szNoav19Xo3USmiUTjcFgkMn9QK53ZOydbLV5aMFLws,10676
 small_fish_gui/pipeline/_segmentation.py,sha256=M2bQzgzw7Zt_DBeM3qvI0V4Pn0HFLwj0l8yV8M5aToo,12977
 small_fish_gui/pipeline/_signaltonoise.py,sha256=7A9t7xu7zghI6cr201Ldm-LjJ5NOuP56VSeJ8KIzcUo,8497
 small_fish_gui/pipeline/actions.py,sha256=EIGIOlwJ_DADX1NcLWwrTP_AidDX-4f4ggZV0gkIb58,7988
-small_fish_gui/pipeline/detection.py,sha256=OmdIm31rtkBADwnGOTjB2EHWMLAfKer7bOXbhYPqUV8,31920
+small_fish_gui/pipeline/detection.py,sha256=MLc8Z1xniuAghn3D0LPmH64jVRobhLj05HW0nI7BDmw,31983
 small_fish_gui/pipeline/main.py,sha256=AAW-zK3b7Ece9cdHn9y6QG8lTa1HXG-8JtnvJ3m0HwA,3149
 small_fish_gui/pipeline/spots.py,sha256=yHvqf1eD25UltELpzcouYXhLkxiXI_mOL1ANSzXK5pw,1907
 small_fish_gui/pipeline/test.py,sha256=w4ZMGDmUDXxVgWTlZ2TKw19W8q5gcE9gLMKe0SWnRrw,2827
-small_fish_gui-1.3.2.dist-info/METADATA,sha256=BDjB5-pGaoIFhh9ujjgQCAZgKn24l6rfMEYQRuocHQk,2567
-small_fish_gui-1.3.2.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
-small_fish_gui-1.3.2.dist-info/licenses/LICENSE,sha256=-iFy8VGBYs5VsHglKpk4D-hxqQ2jMJaqmfq_ulIzDks,1303
-small_fish_gui-1.3.2.dist-info/RECORD,,
+small_fish_gui-1.3.4.dist-info/METADATA,sha256=j18MEZEpw6WbHgnNUfWlsBLuTTlh6fUwCZ43ztNH2eE,2567
+small_fish_gui-1.3.4.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
+small_fish_gui-1.3.4.dist-info/licenses/LICENSE,sha256=-iFy8VGBYs5VsHglKpk4D-hxqQ2jMJaqmfq_ulIzDks,1303
+small_fish_gui-1.3.4.dist-info/RECORD,,