slurmray 6.0.4__py3-none-any.whl

slurmray/utils.py

@@ -0,0 +1,359 @@
+import paramiko
+import socket
+import threading
+import logging
+import os
+import re
+import hashlib
+
+
+class DependencyManager:
+    """Manage dependencies and cache for remote execution"""
+
+    def __init__(self, project_path, logger=None):
+        self.project_path = project_path
+        self.logger = logger
+        self.cache_dir = os.path.join(project_path, ".slogs")
+        self.cache_file = os.path.join(self.cache_dir, "requirements_cache.txt")
+        self.venv_hash_file = os.path.join(self.cache_dir, "venv_hash.txt")
+        self.env_hash_file = os.path.join(self.cache_dir, "env_hash.txt")
+
+        if not os.path.exists(self.cache_dir):
+            os.makedirs(self.cache_dir)
+
+    def parse_requirements(self, req_lines):
+        """Parse requirements into dict {package_lower: {original, version}}"""
+        reqs = {}
+        for line in req_lines:
+            line = line.strip()
+            if not line or line.startswith("#"):
+                continue
+
+            # Handle 'package==version', 'package>=version', 'package'
+            # We split by logical operators to isolate package name
+            # For cache comparison, we primarily care about package name and '==' version
+
+            # Simple split for '=='
+            if "==" in line:
+                parts = line.split("==")
+                name_part = parts[0]
+                version = parts[1].split(";")[0].strip()  # Remove env markers
+            else:
+                # Split by other operators or spaces
+                # re.split returns the parts, we take the first one as name
+                name_part = re.split(r"[<>=;]", line)[0]
+                version = None
+
+            name = name_part.strip().lower()
+
+            # Clean name from extras e.g. ray[default] -> ray
+            if "[" in name:
+                name = name.split("[")[0]
+
+            reqs[name] = {"original": line, "version": version}
+        return reqs
+
+    def load_cache(self):
+        """Load cached requirements"""
+        if not os.path.exists(self.cache_file):
+            return []
+        with open(self.cache_file, "r") as f:
+            return f.readlines()
+
+    def save_cache(self, remote_reqs_lines):
+        """Save remote requirements to cache"""
+        with open(self.cache_file, "w") as f:
+            f.writelines(remote_reqs_lines)
+
+    def compare(self, local_reqs_lines, remote_reqs_lines):
+        """
+        Compare local requirements with remote/cache.
+        Returns a list of lines (requirements) that need to be installed.
+        """
+        local_reqs = self.parse_requirements(local_reqs_lines)
+        remote_reqs = self.parse_requirements(remote_reqs_lines)
+
+        to_install = []
+
+        for name, info in local_reqs.items():
+            local_ver = info["version"]
+            original_line = info["original"]
+
+            if name not in remote_reqs:
+                # Missing on remote
+                to_install.append(original_line + "\n")
+            else:
+                remote_ver = remote_reqs[name]["version"]
+                # If local has version, compare.
+                if local_ver and remote_ver:
+                    if local_ver != remote_ver:
+                        # Version mismatch
+                        to_install.append(original_line + "\n")
+                # If local has no version, strict existence is enough (already checked)
+
+        return to_install
+
+    def compute_requirements_hash(self, req_lines):
+        """
+        Compute a hash of the requirements file content.
+        This hash can be used to detect if the virtualenv needs to be recreated.
+
+        Args:
+            req_lines: List of requirement lines (strings)
+
+        Returns:
+            str: SHA256 hash of sorted requirements (hexdigest)
+        """
+        # Normalize requirements: sort and strip whitespace
+        normalized = sorted(
+            [
+                line.strip()
+                for line in req_lines
+                if line.strip() and not line.strip().startswith("#")
+            ]
+        )
+        content = "\n".join(normalized).encode("utf-8")
+        return hashlib.sha256(content).hexdigest()
+
+    def get_stored_venv_hash(self):
+        """
+        Get the stored virtualenv hash from cache.
+
+        Returns:
+            str or None: The stored hash if it exists, None otherwise
+        """
+        if not os.path.exists(self.venv_hash_file):
+            return None
+        with open(self.venv_hash_file, "r") as f:
+            return f.read().strip()
+
+    def store_venv_hash(self, req_hash):
+        """
+        Store the virtualenv hash to cache.
+
+        Args:
+            req_hash: The hash to store
+        """
+        with open(self.venv_hash_file, "w") as f:
+            f.write(req_hash)
+
+    def should_recreate_venv(self, req_lines):
+        """
+        Check if the virtualenv should be recreated based on requirements hash.
+
+        Args:
+            req_lines: List of requirement lines (strings)
+
+        Returns:
+            bool: True if venv should be recreated, False if it can be reused
+        """
+        current_hash = self.compute_requirements_hash(req_lines)
+        stored_hash = self.get_stored_venv_hash()
+
+        if stored_hash is None:
+            # No hash stored, venv should be created/recreated
+            return True
+
+        if current_hash != stored_hash:
+            # Hash mismatch, requirements changed, venv needs recreation
+            if self.logger:
+                self.logger.info(
+                    f"Requirements changed (hash mismatch), venv will be recreated."
+                )
+            return True
+
+        # Hash matches, venv can be reused
+        if self.logger:
+            self.logger.info(
+                f"Requirements unchanged (hash matches), reusing existing venv."
+            )
+        return False
+
+    def get_stored_env_hash(self):
+        """
+        Get the stored environment hash from cache.
+
+        Returns:
+            str or None: The stored hash if it exists, None otherwise
+        """
+        if not os.path.exists(self.env_hash_file):
+            return None
+        with open(self.env_hash_file, "r") as f:
+            return f.read().strip()
+
+    def store_env_hash(self, env_hash):
+        """
+        Store the environment hash to cache.
+
+        Args:
+            env_hash: The hash to store
+        """
+        with open(self.env_hash_file, "w") as f:
+            f.write(env_hash)
+
+
+class SSHTunnel:
+    """Context manager for SSH port forwarding using Paramiko"""
+
+    def __init__(
+        self,
+        ssh_host: str,
+        ssh_username: str,
+        ssh_password: str,
+        remote_host: str,
+        local_port: int = 8888,
+        remote_port: int = 8888,
+        logger: logging.Logger = None,
+    ):
+        """Initialize SSH tunnel
+
+        Args:
+            ssh_host: SSH server hostname
+            ssh_username: SSH username
+            ssh_password: SSH password
+            remote_host: Remote hostname to forward to
+            local_port: Local port to bind (default: 8888)
+            remote_port: Remote port to forward (default: 8888)
+            logger: Optional logger
+        """
+        self.ssh_host = ssh_host
+        self.ssh_username = ssh_username
+        self.ssh_password = ssh_password
+        self.remote_host = remote_host
+        self.local_port = local_port
+        self.remote_port = remote_port
+        self.ssh_client = None
+        self.forward_server = None
+        self.logger = logger
+
+    def __enter__(self):
+        """Create SSH tunnel"""
+        try:
+            self.ssh_client = paramiko.SSHClient()
+            self.ssh_client.set_missing_host_key_policy(paramiko.AutoAddPolicy())
+            self.ssh_client.connect(
+                hostname=self.ssh_host,
+                username=self.ssh_username,
+                password=self.ssh_password,
+            )
+
+            # Create local port forwarding using socket server
+            transport = self.ssh_client.get_transport()
+
+            # Create a local socket server
+            local_socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
+            local_socket.setsockopt(socket.SOL_SOCKET, socket.SO_REUSEADDR, 1)
+            local_socket.bind(("127.0.0.1", self.local_port))
+            if self.local_port == 0:
+                self.local_port = local_socket.getsockname()[1]
+            local_socket.listen(5)
+            local_socket._closed = False  # Track if server is closed
+            self.forward_server = local_socket
+
+            def forward_handler(client_socket):
+                try:
+                    # Create SSH channel to remote host
+                    channel = transport.open_channel(
+                        "direct-tcpip",
+                        (self.remote_host, self.remote_port),
+                        client_socket.getpeername(),
+                    )
+
+                    # Forward data bidirectionally
+                    def forward_data(source, dest):
+                        try:
+                            while True:
+                                data = source.recv(1024)
+                                if not data:
+                                    break
+                                dest.send(data)
+                        except Exception:
+                            pass
+                        finally:
+                            source.close()
+                            dest.close()
+
+                    # Start forwarding in both directions
+                    thread1 = threading.Thread(
+                        target=forward_data,
+                        args=(client_socket, channel),
+                        daemon=True,
+                    )
+                    thread2 = threading.Thread(
+                        target=forward_data,
+                        args=(channel, client_socket),
+                        daemon=True,
+                    )
+                    thread1.start()
+                    thread2.start()
+                    thread1.join()
+                    thread2.join()
+                except Exception as e:
+                    # Silently ignore connection errors when tunnel is closing
+                    if self.forward_server and not self.forward_server._closed:
+                        # Only log if server is still supposed to be running
+                        pass
+                finally:
+                    try:
+                        client_socket.close()
+                    except Exception:
+                        pass
+
+            def accept_handler():
+                while True:
+                    try:
+                        # Check if server is closed before accepting
+                        if (
+                            hasattr(self.forward_server, "_closed")
+                            and self.forward_server._closed
+                        ):
+                            break
+                        client_socket, addr = self.forward_server.accept()
+                        thread = threading.Thread(
+                            target=forward_handler,
+                            args=(client_socket,),
+                            daemon=True,
+                        )
+                        thread.start()
+                    except (OSError, socket.error):
+                        # Socket closed or connection refused - normal when shutting down
+                        break
+                    except Exception:
+                        break
+
+            forward_thread = threading.Thread(target=accept_handler, daemon=True)
+            forward_thread.start()
+
+            msg = f"🎉 Dashboard forwarded and available here : http://localhost:{self.local_port}"
+            print(msg)
+            if self.logger:
+                self.logger.info(msg)
+            return self
+        except Exception as e:
+            msg = f"Warning: Failed to create SSH tunnel: {e}"
+            print(msg)
+            print("Dashboard will not be accessible via port forwarding")
+            if self.logger:
+                self.logger.warning(msg)
+                self.logger.info("Dashboard will not be accessible via port forwarding")
+            if self.ssh_client:
+                self.ssh_client.close()
+            self.ssh_client = None
+            self.forward_server = None
+            return self
+
+    def __exit__(self, exc_type, exc_val, exc_tb):
+        """Close SSH tunnel"""
+        if self.forward_server:
+            try:
+                # Mark server as closed first to prevent new connections
+                self.forward_server._closed = True
+                self.forward_server.close()
+            except Exception:
+                pass
+        if self.ssh_client:
+            try:
+                self.ssh_client.close()
+            except Exception:
+                pass
+        return False

slurmray-6.0.4.dist-info/LICENSE

@@ -0,0 +1,201 @@
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slurmray-6.0.4.dist-info/METADATA

@@ -0,0 +1,85 @@
+Metadata-Version: 2.3
+Name: slurmray
+Version: 6.0.4
+Summary: SlurmRay is an official tool from DESI @ HEC UNIL for effortlessly distributing tasks on Slurm clusters (e.g., Curnagl) or standalone servers (e.g., ISIPOL09/Desi) using the Ray library.
+License: Apache License
+Keywords: ray,slurm,distributed-computing,hpc,desi,hec-unil
+Author: Henri Jamet
+Author-email: henri.jamet@unil.ch
+Requires-Python: >=3.9,<4.0
+Classifier: License :: Other/Proprietary License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Dist: dill (>=0.3.7,<0.4.0)
+Requires-Dist: inquirer (>=3.1.3,<4.0.0)
+Requires-Dist: paramiko (>=3.3.1,<4.0.0)
+Requires-Dist: pdoc3 (>=0.10.0,<0.11.0)
+Requires-Dist: python-dotenv (>=1.0.0,<2.0.0)
+Requires-Dist: ray[data,serve,train,tune] (>=2.7.1,<3.0.0)
+Requires-Dist: rich (>=14.2.0,<15.0.0)
+Requires-Dist: setuptools (>=80.9.0,<81.0.0)
+Project-URL: Documentation, https://henri-jamet.vercel.app/cards/documentation/slurm-ray/slurm-ray/
+Project-URL: Homepage, https://henri-jamet.vercel.app/
+Description-Content-Type: text/markdown
+
+# SlurmRay
+
+**SlurmRay** is a powerful tool designed to simplify the execution of Python code on remote clusters (Slurm) and standalone servers. It automates the complex process of dependency management, environment setup, and job submission.
+
+## Project Overview
+- **Goal**: Effortslessly distribute Python tasks on Slurm clusters or standalone servers using the Ray library.
+- **Status**: Stable (v6.0.4). Correction de la détection erronée des packages locaux (binaires venv).
+- **Features**: Utilisation de `uv` pour la génération des requirements, suppression des contraintes de version pour compatibilité multi-Python.
+
+## Main Entry Scripts
+| Script | Purpose | Usage Example | Env Vars |
+| :--- | :--- | :--- | :--- |
+| `slurmray` | CLI entry point for project management and job monitoring. | `slurmray --help` | `SLURMRAY_CONFIG` |
+
+*The `slurmray` command is the primary way to interact with the system once installed via pip or poetry.*
+
+## Installation
+1. **Prerequisites**: Python >= 3.9, Poetry (optional).
+2. **Commands**:
+```bash
+pip install slurmray
+```
+*Installs the stable version of SlurmRay from PyPI.*
+
+```bash
+git clone https://github.com/lopilo/SLURM_RAY.git
+cd SLURM_RAY
+poetry install
+```
+*Prepares the development environment and installs dependencies in a virtual environment.*
+
+## Key Results
+| Benchmark | Cluster | Performance |
+| :--- | :--- | :--- |
+| Job Startup | Curnagl | < 5s (cached) |
+| File Sync | ISIPOL | Incremental (HA-based) |
+
+## Repository Map
+```text
+.
+├── slurmray/         # Core package logic
+│   ├── backend/      # Cluster/Server specific implementations
+│   ├── scanner.py    # AST-based dependency tracer
+│   └── file_sync.py  # Incremental file synchronization
+├── tests/            # Automated test suite
+├── documentation/    # Extended technical docs
+└── pyproject.toml    # Project configuration and metadata
+```
+
+## Utility Scripts
+*No additional utility scripts in `scripts/utils/` currently.*
+
+## Roadmap
+- **Enhanced Caching**: Implement more aggressive caching for large conda/venv environments to reduce startup time. *Estimated: 15h. Priority: High.*
+- **Monitoring Dashboard**: Integration with a web-based UI for real-time job monitoring and log visualization. *Estimated: 40h. Priority: Medium.*
+- **Docker Support**: Allow running jobs inside custom Docker containers on supported Slurm clusters. *Estimated: 25h. Priority: Low.*
+

slurmray-6.0.4.dist-info/RECORD

@@ -0,0 +1,24 @@
+slurmray/RayLauncher.py,sha256=ZcbRxEQGUzfDVzfedJhlAFmzomDIV5KzvPpAZ6-XGto,45819
+slurmray/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+slurmray/__main__.py,sha256=ZQt_merGP_zLaB5QWdzH4oxgjOGnwdsMLMVXgNmSKH4,70
+slurmray/assets/cleanup_old_projects.py,sha256=Fyv3YKnDPttMOvOoSxS2Co1jF42Ys1CX8zsT0zZIIwg,5354
+slurmray/assets/sbatch_template.sh,sha256=BKj3TL-ewcqhYVsVMB0be6pDUV1vi34GDuVpqFLhsVk,2295
+slurmray/assets/slurmray_server.sh,sha256=ZPNjQ2vydxmI9keodEhmMqVcR_tWvaQZbX-hjveCD0I,6033
+slurmray/assets/slurmray_server_template.py,sha256=2nRPe9FdZ3ZY--8_lyCV7aWH3gpMryB3kgHuwE9ADxI,1355
+slurmray/assets/spython_template.py,sha256=vQkWY6Jl93pMmhEx8C5eOTKDxl_EFgdba7pzr5pe0g0,3639
+slurmray/backend/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+slurmray/backend/base.py,sha256=95HmsIg8PsHTj9EErpzdnRwRmPwf4BTQ_WDpCIigkF8,45420
+slurmray/backend/desi.py,sha256=xFqeKnVdyx0z-NO5IqkToMdgD37X8RT2-TWT3_ZrJ6c,34223
+slurmray/backend/local.py,sha256=GBKogMKaXP2rB82a00QhCLY5JFItACF9s0MkSK-QcBk,4697
+slurmray/backend/remote.py,sha256=lmKBeMwC7ESeoBtg_P-wGLJanCvm9LU6sVRzbbswHJw,7165
+slurmray/backend/slurm.py,sha256=qvFJKvpzYCIs-obT6gVl8hVtyw_PLs06Llnqr1retQE,50575
+slurmray/cli.py,sha256=UDrUaFWuKoAR3Y_KWbIf0f4u59dKe9HZYs2eNIYJtCY,35713
+slurmray/detection.py,sha256=Nqnn8clbgv-5l0PgxcTOldg8mkMKrFn4TvPL-rYUUGg,1
+slurmray/file_sync.py,sha256=TNLuJxWOl2AUcT5t3DdEwlVHP4F41RV2m6nTwE26Wd4,10501
+slurmray/scanner.py,sha256=ccZF_c0GbpsWo03OhuoYChJyuggn8jIX5cDwAIcR-mg,19045
+slurmray/utils.py,sha256=wLtjlEunpys0DNxTi0Ts_1ZQWQkC3prLG2rg3h_ChJ8,12792
+slurmray-6.0.4.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+slurmray-6.0.4.dist-info/METADATA,sha256=kKS7NT3-vEhR_5WDWxtILjvpqVQFyPX0Wjv3O4OWNkQ,3766
+slurmray-6.0.4.dist-info/WHEEL,sha256=XbeZDeTWKc1w7CSIyre5aMDU_-PohRwTQceYnisIYYY,88
+slurmray-6.0.4.dist-info/entry_points.txt,sha256=rPyaZsidMpsjLzyDdS6LLoKWZ4sTp4pt6vkcP4l1xyk,46
+slurmray-6.0.4.dist-info/RECORD,,

slurmray-6.0.4.dist-info/WHEEL

@@ -0,0 +1,4 @@
+Wheel-Version: 1.0
+Generator: poetry-core 2.1.1
+Root-Is-Purelib: true
+Tag: py3-none-any

slurmray-6.0.4.dist-info/entry_points.txt

@@ -0,0 +1,3 @@
+[console_scripts]
+slurmray=slurmray.cli:main
+