sl-shared-assets 5.1.2__py3-none-any.whl → 6.0.0rc1__py3-none-any.whl

sl_shared_assets/command_line_interfaces/configure.py

@@ -15,7 +15,7 @@ from ..data_classes import (
 )
 
 # Ensures that displayed CLICK help messages are formatted according to the lab standard.
-CONTEXT_SETTINGS = dict(max_content_width=120)  # or any width you want
+CONTEXT_SETTINGS = dict(max_content_width=120)
 
 
 @click.group("manage", context_settings=CONTEXT_SETTINGS)

sl_shared_assets/server/pipeline.py

@@ -342,6 +342,9 @@ class ProcessingTracker(YamlConfig):
                 self._complete = True
                 self._encountered_error = False
                 self._save_state()
+            else:
+                # Otherwise, updates the completed job counter, but does not change any other state variables.
+                self._save_state()
 
     def abort(self) -> None:
         """Resets the pipeline tracker file to the default state.
@@ -524,11 +527,22 @@ class ProcessingPipeline:
         # to the server.
         elif tracker.is_running:
             self._pipeline_stage += 1
-            self._submit_jobs()
+
+            # If the incremented stage is not a valid stage, the pipeline has actually been aborted and the tracker file
+            # does not properly reflect this state. Sets the internal state tracker appropriately and resets (removes)
+            # the tracker file from the server to prevent deadlocking further runtimes
+            if self._pipeline_stage not in self.jobs.keys():
+                sh.rmtree(self.local_tracker_path.parent)  # Removes local temporary data
+                self.pipeline_status = ProcessingStatus.ABORTED
+                self.server.remove(remote_path=self.remote_tracker_path, is_dir=False)
+            else:
+                # Otherwise, submits the next batch of jobs to the server.
+                self._submit_jobs()
 
         # The final and the rarest state: the pipeline was aborted before it finished the runtime. Generally, this state
         # should not be encountered during most runtimes.
         else:
+            sh.rmtree(self.local_tracker_path.parent)  # Removes local temporary data
             self.pipeline_status = ProcessingStatus.ABORTED
 
     def _submit_jobs(self) -> None:

sl_shared_assets/tools/packaging_tools.py

@@ -115,7 +115,7 @@ def calculate_directory_checksum(
         results = []
         if not batch:
             with tqdm(
-                total=len(files), desc=f"Calculating checksum for {Path(*directory.parts[-6:])}", unit="files"
+                total=len(files), desc=f"Calculating checksum for {Path(*directory.parts[-6:])}", unit="file"
             ) as pbar:
                 for future in as_completed(future_to_path):
                     results.append(future.result())

{sl_shared_assets-5.1.2.dist-info → sl_shared_assets-6.0.0rc1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: sl-shared-assets
-Version: 5.1.2
+Version: 6.0.0rc1
 Summary: Provides data acquisition and processing assets shared between Sun (NeuroAI) lab libraries.
 Project-URL: Homepage, https://github.com/Sun-Lab-NBB/sl-shared-assets
 Project-URL: Documentation, https://sl-shared-assets-api-docs.netlify.app/
@@ -686,12 +686,10 @@ Classifier: Development Status :: 5 - Production/Stable
 Classifier: Intended Audience :: Developers
 Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
 Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Classifier: Topic :: Scientific/Engineering
 Classifier: Typing :: Typed
-Requires-Python: >=3.11
+Requires-Python: <3.14,>=3.13
 Requires-Dist: appdirs<2,>=1
 Requires-Dist: ataraxis-base-utilities<4,>=3
 Requires-Dist: ataraxis-data-structures<4,>=3

{sl_shared_assets-5.1.2.dist-info → sl_shared_assets-6.0.0rc1.dist-info}/RECORD

@@ -1,7 +1,7 @@
 sl_shared_assets/__init__.py,sha256=rFNpMl0SFSQhBnCnmEYWsqf_4v0zmwt1xvSFFblUic0,2786
 sl_shared_assets/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sl_shared_assets/command_line_interfaces/__init__.py,sha256=dbcCiuBCe1uqz6d1D-dFpSkRwYP603tEGkc1RbZcI6w,126
-sl_shared_assets/command_line_interfaces/configure.py,sha256=lAWhLzJ7UmdvUZlges9Hg5pnblQuXSDlgzr12y41108,6140
+sl_shared_assets/command_line_interfaces/configure.py,sha256=ebzej7m2gZtJW_lH6m7ERIv1BcvYfqXNBxlUf0vXFq4,6115
 sl_shared_assets/command_line_interfaces/manage.py,sha256=-Ac5AufjiIpIYs2SSSstIAEHryZWsDHPt_cgWrNp8O4,10786
 sl_shared_assets/data_classes/__init__.py,sha256=7Cslz_z0K2VmgXjOR1u-NBySoWYfUNawBHh_1xLiFZ0,2092
 sl_shared_assets/data_classes/configuration_data.py,sha256=9gVo7bQShCMqAuau8d9BML6RrQyA4wg8ZFol1RJfJ7g,41334
@@ -10,14 +10,14 @@ sl_shared_assets/data_classes/session_data.py,sha256=gfzdFnBXwawWXQWiwZ3UXQeYaja
 sl_shared_assets/data_classes/surgery_data.py,sha256=-rENeSjAPmoIc-fp_skI4-EW_uxbK0Ps9aTLPWLkTSQ,7624
 sl_shared_assets/server/__init__.py,sha256=cIZFNE8pPPujp_FxIt6yT22L-4V4XBb1e_x4cnTrtSI,685
 sl_shared_assets/server/job.py,sha256=_u27gXwSfg3ztCemAtiskC9KnDfqF-RvWlTYYk0wHvQ,18704
-sl_shared_assets/server/pipeline.py,sha256=Uqg210L6N71OHTy4--8iocRz_bV5cBSUOVZnOk_u1zg,32157
+sl_shared_assets/server/pipeline.py,sha256=OtpF28Nd8590RoKkyGUBwLdOxVD692cLMX6mM-Rhicw,33134
 sl_shared_assets/server/server.py,sha256=FEBx9isTswndAKFaZ6MM4qyFp75FcE2ZWUiwc_uycMI,32825
 sl_shared_assets/tools/__init__.py,sha256=mz0YCAKm4UMYtLErBLXIRJ-QxkHV9S9j5BHrDZMqVWg,769
-sl_shared_assets/tools/packaging_tools.py,sha256=9kwUSQQRCOycpNA7ovthCTXYX1HCC7p1iDnCYz2K2B8,6978
+sl_shared_assets/tools/packaging_tools.py,sha256=4MRYvXQ6PfW1bB_uB5ngDHR0NbgJQW2kCwZw_7U-224,6977
 sl_shared_assets/tools/project_management_tools.py,sha256=7oqR5NSA0pLHZyS-gKIJwajfGkdz1ENgJpuKyxBdN_8,33836
 sl_shared_assets/tools/transfer_tools.py,sha256=6lwk4zyHWWB0QeWQageiQ1pPIGUV0IhBNNzsbgQ_qH4,9026
-sl_shared_assets-5.1.2.dist-info/METADATA,sha256=xz8Li4rS3TB7WEY3iPD-Rytf65H0BLw1e_ea7A97_bY,46884
-sl_shared_assets-5.1.2.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-sl_shared_assets-5.1.2.dist-info/entry_points.txt,sha256=19NzFPG5CcW-4RhEacTcX3J2TbrvmjOE4tlLCH2O5wI,161
-sl_shared_assets-5.1.2.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-sl_shared_assets-5.1.2.dist-info/RECORD,,
+sl_shared_assets-6.0.0rc1.dist-info/METADATA,sha256=BamAQ6Sw_QjeI3TyeBTxOC_8tSDMHF42EjZlKR339NI,46791
+sl_shared_assets-6.0.0rc1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+sl_shared_assets-6.0.0rc1.dist-info/entry_points.txt,sha256=19NzFPG5CcW-4RhEacTcX3J2TbrvmjOE4tlLCH2O5wI,161
+sl_shared_assets-6.0.0rc1.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+sl_shared_assets-6.0.0rc1.dist-info/RECORD,,