sl-shared-assets 4.0.1__py3-none-any.whl → 5.0.0__py3-none-any.whl

sl_shared_assets/tools/transfer_tools.pyi

@@ -1,53 +0,0 @@
-from pathlib import Path
-
-from .packaging_tools import calculate_directory_checksum as calculate_directory_checksum
-
-def _transfer_file(source_file: Path, source_directory: Path, destination_directory: Path) -> None:
-    """Copies the input file from the source directory to the destination directory while preserving the file metadata.
-
-    This is a worker method used by the transfer_directory() method to move multiple files in parallel.
-
-    Notes:
-        If the file is found under a hierarchy of subdirectories inside the input source_directory, that hierarchy will
-        be preserved in the destination directory.
-
-    Args:
-        source_file: The file to be copied.
-        source_directory: The root directory where the file is located.
-        destination_directory: The destination directory where to move the file.
-    """
-
-def transfer_directory(source: Path, destination: Path, num_threads: int = 1, verify_integrity: bool = True) -> None:
-    """Copies the contents of the input directory tree from source to destination while preserving the folder
-    structure.
-
-    This function is used to assemble the experimental data from all remote machines used in the acquisition process on
-    the VRPC before the data is preprocessed. It is also used to transfer the preprocessed data from the VRPC to the
-    SynologyNAS and the Sun lab BioHPC server.
-
-    Notes:
-        This method recreates the moved directory hierarchy on the destination if the hierarchy does not exist. This is
-        done before copying the files.
-
-        The method executes a multithreading copy operation. It does not clean up the source files. That job is handed
-        to the specific preprocessing function from the sl_experiment or sl-forgery libraries that call this function.
-
-        If the method is configured to verify transferred file integrity, it reruns the xxHash3-128 checksum calculation
-        and compares the returned checksum to the one stored in the source directory. The method assumes that all input
-        directories contain the 'ax_checksum.txt' file that stores the 'source' directory checksum at the highest level
-        of the input directory tree.
-
-    Args:
-        source: The path to the directory that needs to be moved.
-        destination: The path to the destination directory where to move the contents of the source directory.
-        num_threads: The number of threads to use for parallel file transfer. This number should be set depending on the
-            type of transfer (local or remote) and is not guaranteed to provide improved transfer performance. For local
-            transfers, setting this number above 1 will likely provide a performance boost. For remote transfers using
-            a single TCP / IP socket (such as non-multichannel SMB protocol), the number should be set to 1.
-        verify_integrity: Determines whether to perform integrity verification for the transferred files. Note,
-            integrity verification is a time-consuming process and generally would not be a concern for most runtimes.
-            Therefore, it is often fine to disable this option to optimize method runtime speed.
-
-    Raises:
-        RuntimeError: If the transferred files do not pass the xxHas3-128 checksum integrity verification.
-    """

sl_shared_assets-4.0.1.dist-info/RECORD

@@ -1,36 +0,0 @@
-sl_shared_assets/__init__.py,sha256=h4QBqUSvHTDYo9xJgfSzVwIRmH5RJEKgNPA0Hoy274Q,2611
-sl_shared_assets/__init__.pyi,sha256=rFWG-cUSrwlNyaxMX0LGR42WS4YE_Q5-PzPiYuum6V0,2996
-sl_shared_assets/cli.py,sha256=pUebcXDlG47CAQnCGFSNBEKdpzeD8_zDRwg74LDkc04,19842
-sl_shared_assets/cli.pyi,sha256=_jErcrfdWROiZJm4QnZGQC85bw5FWKvs0LIwm3bR6nI,5408
-sl_shared_assets/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sl_shared_assets/data_classes/__init__.py,sha256=BSWFbTavTAHZx1ss1EgNr16an9iUz5HDOq617HpVXNE,2143
-sl_shared_assets/data_classes/__init__.pyi,sha256=IgdbnAxhPGNmwjStwEZspvdBxm2aP67gX6eLlT_f8Ew,2463
-sl_shared_assets/data_classes/configuration_data.py,sha256=bmD9bICgRtsM2P1wSInUfjlmaT2ZjiOwPlo87EkYt8U,36361
-sl_shared_assets/data_classes/configuration_data.pyi,sha256=1_kmBDPGkHmVwXEGYR_3uERBSsenQOTuquMBtjKVTA8,11068
-sl_shared_assets/data_classes/runtime_data.py,sha256=ruo5KZ1VSfGwSg_gtSyWTbLBFcfG7Az455cKxiUpDoc,17565
-sl_shared_assets/data_classes/runtime_data.pyi,sha256=kCVSpS69goF-MRCZtp7EnoruTye64rjKsdPoDiC0PjU,6942
-sl_shared_assets/data_classes/session_data.py,sha256=MuzKQYILXJVCCNHzkLq9yrGAin4yj3bbiW4q8P0jmMk,51106
-sl_shared_assets/data_classes/session_data.pyi,sha256=KTQr0OXfeOk8eaUOsXW2-2UYjIjWcZSoW7Hv69l6JW0,20653
-sl_shared_assets/data_classes/surgery_data.py,sha256=riwyULMdZ8pDXFLdyNByNSeMk1-mVTo1FcCl5FrThas,7495
-sl_shared_assets/data_classes/surgery_data.pyi,sha256=3ILU5H_BUXEE9YXgPdVMC10jxivixPlJILBMg7OdEwc,2615
-sl_shared_assets/server/__init__.py,sha256=GOQ7wWjiS5Xg_WgTqeEqCTRF9ms9GXx0nffCr-BmKsA,453
-sl_shared_assets/server/__init__.pyi,sha256=Zc12G90fZdgEMwaVZbFzrRVV1wH_LEj3sxaV3lhk1Cw,316
-sl_shared_assets/server/job.py,sha256=wZbppMrv6fqch79bKLjOGQ9AYfjiDKDnTyUe7xgAT44,19461
-sl_shared_assets/server/job.pyi,sha256=wop4ulVY2u6eb3twajeA9MS0EAtNb89aA56pPoGF1Xc,11673
-sl_shared_assets/server/server.py,sha256=EpJEBY8660QoG8kGb4TmIZLXZEjBrGEVSLJ7G14y6kk,34770
-sl_shared_assets/server/server.pyi,sha256=K42zwzaZk13LH964fex3sK2kCL_Ulis_GualZkZG-NA,15828
-sl_shared_assets/tools/__init__.py,sha256=i-oUVw_un3lzyyII4Sc75s4BnUfZh_aUbQe6dP2Vrbc,743
-sl_shared_assets/tools/__init__.pyi,sha256=pi-5AJyQYeuqIFGWpJ_HhUpXLq6P_nItIqDhsdaIJFU,686
-sl_shared_assets/tools/ascension_tools.py,sha256=xI-hrkR9NIgb7lyhj-ntc8tCYQvDEv6YgYJXl1yvxCs,14639
-sl_shared_assets/tools/ascension_tools.pyi,sha256=fs5j7nbnZ4WpgK8D75A7WJcvFMwK_MUO9ULIYo1YkGo,3739
-sl_shared_assets/tools/packaging_tools.py,sha256=TeYcP8-ykA1gSwnu4jCrvzQR8FY1Ki6sn1kY1pCvtYg,7462
-sl_shared_assets/tools/packaging_tools.pyi,sha256=u_oDZF44lZrzhU56Pomny_UWq2qN93UC8jcMFnRO9wQ,3183
-sl_shared_assets/tools/project_management_tools.py,sha256=9A133D38BkvRX_tXGS5-o6y9YAH_TI3H_oPCZqw91Zc,39599
-sl_shared_assets/tools/project_management_tools.pyi,sha256=NwmqHwSC0uu8vxtHDA7BTv1dneibj7MErE4XHeGRQTI,13251
-sl_shared_assets/tools/transfer_tools.py,sha256=vqYO4sERZV0W1DFNFnTpJA6QBZ4QJA94a2TyUhZW2Qk,6605
-sl_shared_assets/tools/transfer_tools.pyi,sha256=WtUGfaKV9FP_CnhBg_UvclpuDvOlEESOSMlEDtWpOLg,3293
-sl_shared_assets-4.0.1.dist-info/METADATA,sha256=KzF2ukjsxK_Sef1sUbSBLeR_7mzvLaPkN9zr4kgheRw,56941
-sl_shared_assets-4.0.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-sl_shared_assets-4.0.1.dist-info/entry_points.txt,sha256=UmO1rl7ly9N7HWPwWyP9E0b5KBUStpBo4TRoqNtizDY,430
-sl_shared_assets-4.0.1.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-sl_shared_assets-4.0.1.dist-info/RECORD,,

sl_shared_assets-4.0.1.dist-info/entry_points.txt

@@ -1,7 +0,0 @@
-[console_scripts]
-sl-ascend-tyche = sl_shared_assets.cli:ascend_tyche_directory
-sl-create-server-credentials = sl_shared_assets.cli:generate_server_credentials_file
-sl-dataset-marker = sl_shared_assets.cli:resolve_dataset_marker
-sl-project-manifest = sl_shared_assets.cli:generate_project_manifest_file
-sl-start-jupyter = sl_shared_assets.cli:start_jupyter_server
-sl-verify-session = sl_shared_assets.cli:verify_session_integrity