sl-shared-assets 3.0.0rc11__py3-none-any.whl → 3.0.0rc13__py3-none-any.whl

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Files changed (12) hide show
  1. sl_shared_assets/__init__.py +2 -0
  2. sl_shared_assets/__init__.pyi +2 -0
  3. sl_shared_assets/data_classes/__init__.py +2 -0
  4. sl_shared_assets/data_classes/__init__.pyi +2 -0
  5. sl_shared_assets/data_classes/runtime_data.py +5 -3
  6. sl_shared_assets/data_classes/runtime_data.pyi +1 -0
  7. sl_shared_assets/data_classes/session_data.py +4 -0
  8. {sl_shared_assets-3.0.0rc11.dist-info → sl_shared_assets-3.0.0rc13.dist-info}/METADATA +1 -1
  9. {sl_shared_assets-3.0.0rc11.dist-info → sl_shared_assets-3.0.0rc13.dist-info}/RECORD +12 -12
  10. {sl_shared_assets-3.0.0rc11.dist-info → sl_shared_assets-3.0.0rc13.dist-info}/WHEEL +0 -0
  11. {sl_shared_assets-3.0.0rc11.dist-info → sl_shared_assets-3.0.0rc13.dist-info}/entry_points.txt +0 -0
  12. {sl_shared_assets-3.0.0rc11.dist-info → sl_shared_assets-3.0.0rc13.dist-info}/licenses/LICENSE +0 -0
sl_shared_assets/__init__.py CHANGED
@@ -35,6 +35,7 @@ from .data_classes import (
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  RunTrainingDescriptor,
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  LickTrainingDescriptor,
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  MesoscopeHardwareState,
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+ WindowCheckingDescriptor,
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  MesoscopeMicroControllers,
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  MesoscopeAdditionalFirmware,
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  MesoscopeSystemConfiguration,
@@ -83,6 +84,7 @@ __all__ = [
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  "ExperimentTrial",
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  "SessionTypes",
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  "AcquisitionSystems",
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+ "WindowCheckingDescriptor",
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  # Tools package
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  "resolve_p53_marker",
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  "transfer_directory",
sl_shared_assets/__init__.pyi CHANGED
@@ -31,6 +31,7 @@ from .data_classes import (
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  RunTrainingDescriptor as RunTrainingDescriptor,
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  LickTrainingDescriptor as LickTrainingDescriptor,
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  MesoscopeHardwareState as MesoscopeHardwareState,
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+ WindowCheckingDescriptor as WindowCheckingDescriptor,
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  MesoscopeMicroControllers as MesoscopeMicroControllers,
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  MesoscopeAdditionalFirmware as MesoscopeAdditionalFirmware,
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  MesoscopeSystemConfiguration as MesoscopeSystemConfiguration,
@@ -73,6 +74,7 @@ __all__ = [
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  "ExperimentTrial",
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  "SessionTypes",
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  "AcquisitionSystems",
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+ "WindowCheckingDescriptor",
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  "resolve_p53_marker",
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  "transfer_directory",
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  "calculate_directory_checksum",
sl_shared_assets/data_classes/__init__.py CHANGED
@@ -9,6 +9,7 @@ from .runtime_data import (
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  RunTrainingDescriptor,
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  LickTrainingDescriptor,
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  MesoscopeHardwareState,
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+ WindowCheckingDescriptor,
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  MesoscopeExperimentDescriptor,
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  )
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  from .session_data import RawData, SessionData, SessionTypes, ProcessedData, ProcessingTracker
@@ -63,4 +64,5 @@ __all__ = [
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  "ExperimentTrial",
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  "AcquisitionSystems",
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  "SessionTypes",
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+ "WindowCheckingDescriptor",
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  ]
sl_shared_assets/data_classes/__init__.pyi CHANGED
@@ -4,6 +4,7 @@ from .runtime_data import (
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  RunTrainingDescriptor as RunTrainingDescriptor,
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  LickTrainingDescriptor as LickTrainingDescriptor,
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  MesoscopeHardwareState as MesoscopeHardwareState,
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+ WindowCheckingDescriptor as WindowCheckingDescriptor,
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  MesoscopeExperimentDescriptor as MesoscopeExperimentDescriptor,
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  )
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  from .session_data import (
@@ -64,4 +65,5 @@ __all__ = [
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  "ExperimentTrial",
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  "AcquisitionSystems",
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  "SessionTypes",
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+ "WindowCheckingDescriptor",
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  ]
sl_shared_assets/data_classes/runtime_data.py CHANGED
@@ -257,13 +257,13 @@ class MesoscopePositions(YamlConfig):
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  """
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  mesoscope_x: float = 0.0
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- """The Mesoscope objective X-axis position, in centimeters."""
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+ """The Mesoscope objective X-axis position, in micrometers."""
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  mesoscope_y: float = 0.0
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- """The Mesoscope objective Y-axis position, in centimeters."""
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+ """The Mesoscope objective Y-axis position, in micrometers."""
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  mesoscope_roll: float = 0.0
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  """The Mesoscope objective Roll-axis position, in degrees."""
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  mesoscope_z: float = 0.0
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- """The Mesoscope objective Z-axis position, in centimeters."""
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+ """The Mesoscope objective Z-axis position, in micrometers."""
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  mesoscope_fast_z: float = 0.0
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  """The ScanImage FastZ (virtual Z-axis) position, in micrometers."""
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  mesoscope_tip: float = 0.0
@@ -272,3 +272,5 @@ class MesoscopePositions(YamlConfig):
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  """The ScanImage Tip position, in degrees."""
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  laser_power_mw: float = 0.0
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  """The laser excitation power at the sample, in milliwatts."""
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+ red_dot_alignment_z: float = 0.0
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+ """The Mesoscope objective Z-axis position, in micrometers, used for red-dot alignment procedure."""
sl_shared_assets/data_classes/runtime_data.pyi CHANGED
@@ -151,3 +151,4 @@ class MesoscopePositions(YamlConfig):
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  mesoscope_tip: float = ...
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  mesoscope_tilt: float = ...
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  laser_power_mw: float = ...
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+ red_dot_alignment_z: float = ...
sl_shared_assets/data_classes/session_data.py CHANGED
@@ -553,6 +553,10 @@ class SessionData(YamlConfig):
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  origin.raw_data = None # type: ignore
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  origin.processed_data = None # type: ignore
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+ # Converts StringEnum instances to strings
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+ origin.session_type = str(origin.session_type)
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+ origin.animal_id = str(origin.acquisition_system)
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+
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  # Saves instance data as a .YAML file
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  origin.to_yaml(file_path=self.raw_data.session_data_path)
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{sl_shared_assets-3.0.0rc11.dist-info → sl_shared_assets-3.0.0rc13.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: sl-shared-assets
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- Version: 3.0.0rc11
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+ Version: 3.0.0rc13
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  Summary: Provides data acquisition and processing assets shared between Sun (NeuroAI) lab libraries.
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  Project-URL: Homepage, https://github.com/Sun-Lab-NBB/sl-shared-assets
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  Project-URL: Documentation, https://sl-shared-assets-api-docs.netlify.app/
{sl_shared_assets-3.0.0rc11.dist-info → sl_shared_assets-3.0.0rc13.dist-info}/RECORD RENAMED
@@ -1,15 +1,15 @@
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- sl_shared_assets/__init__.py,sha256=SZcLWZ7N-rBeHXxOGS_rgwnXLPMWkh2QcpOFjqubxeE,2285
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- sl_shared_assets/__init__.pyi,sha256=4Mm1wCzmUQ1iGosjqo3sqNB_TZ6hQlsQ6-aG_EIDs10,2525
1
+ sl_shared_assets/__init__.py,sha256=rCu1VYs2Lc1l0jqHO3UtfuymU0uY2ccxEn4UyscIut8,2347
2
+ sl_shared_assets/__init__.pyi,sha256=WCWIS-I3ToP4XybNZAi3fA7j2CZ48dl9D-fmd7oZKCo,2615
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  sl_shared_assets/cli.py,sha256=R_h_Dlla48mG1LpFDDE9flZ_NyDC9UguRUAYZL6gA9s,18383
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  sl_shared_assets/cli.pyi,sha256=8ZJK56_jh2QlF3XCN6c7fI6Z022XtehB0eCrQDJbAsU,5515
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  sl_shared_assets/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- sl_shared_assets/data_classes/__init__.py,sha256=ASaEsXTIXLtm7YqAUKywG090JN2kpEUBQRdr6uC4mE4,1936
7
- sl_shared_assets/data_classes/__init__.pyi,sha256=666D10RavyFMPOAXhI5Nq3KO-3mxXd1RbaORBMdWJEI,2148
6
+ sl_shared_assets/data_classes/__init__.py,sha256=bdm0hyQpNF0RL2SPhUgaOz33FsRzpM2L_z5-91HyZBE,1998
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+ sl_shared_assets/data_classes/__init__.pyi,sha256=J7ZCH9qQ4qz-3Wq9ILdihlmK9zFR3iU1cpLcSaN45Y8,2238
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  sl_shared_assets/data_classes/configuration_data.py,sha256=HAdYUVy_8gg_ECN56RAEih9UB7DoZ4J3S5a8ky8o4dQ,36076
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  sl_shared_assets/data_classes/configuration_data.pyi,sha256=11Q6OJjN6PdrlZwVPYCL4TEGxkbKL7mGb2S1sSMKsqs,11027
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- sl_shared_assets/data_classes/runtime_data.py,sha256=TNX3z9udP6Kfqye1ut4TRxeyI2sKzTe_vFBs9bMs8tg,16580
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- sl_shared_assets/data_classes/runtime_data.pyi,sha256=gOpQvA7ng586jdiEd7dJXyzx76_9MvKflAWaIsL3Tf8,6731
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- sl_shared_assets/data_classes/session_data.py,sha256=2xW52fo7yiTswmt65qf6SdOmE-uP-SWqtXkgwZNdT4U,48063
10
+ sl_shared_assets/data_classes/runtime_data.py,sha256=MLIef6s9n2gG6sbp197gpFfzb05e_8vwVzyS_oSmXYQ,16722
11
+ sl_shared_assets/data_classes/runtime_data.pyi,sha256=LzNuEWu-GlPGdyyi8Hn2OFUjGCWOaOplKsRQBbjn2vQ,6768
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+ sl_shared_assets/data_classes/session_data.py,sha256=njylTcnK_MJne3k3ZeGt_1bQQHN8vhGmiKnu2pUo06Q,48228
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  sl_shared_assets/data_classes/session_data.pyi,sha256=g53jIe-v8VkQJHc7ITS0KBGRhzn6LOIb6f96SEbEGig,15898
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  sl_shared_assets/data_classes/surgery_data.py,sha256=5B1OPKFq4bnzbAoe-_c5dFV3kbSD5YFzXbX2zXmfGs8,7485
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  sl_shared_assets/data_classes/surgery_data.pyi,sha256=rf59lJ3tGSYKHQlEGXg75MnjajBwl0DYhL4TClAO4SM,2605
@@ -29,8 +29,8 @@ sl_shared_assets/tools/project_management_tools.py,sha256=Z_U0R26w9Le1O-u66gyF5C
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  sl_shared_assets/tools/project_management_tools.pyi,sha256=4kok98nOZ4KnT-Sg-ZCZYg-WIM5qZqiyK8g1XiiDjHM,10375
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  sl_shared_assets/tools/transfer_tools.py,sha256=J26kwOp_NpPSY0-xu5FTw9udte-rm_mW1FJyaTNoqQI,6606
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  sl_shared_assets/tools/transfer_tools.pyi,sha256=FoH7eYZe7guGHfPr0MK5ggO62uXKwD2aJ7h1Bu7PaEE,3294
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- sl_shared_assets-3.0.0rc11.dist-info/METADATA,sha256=bWXGSlddEAP1TR7XPqQUroBg8cwSU6dJqufWzKqK9zg,49214
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- sl_shared_assets-3.0.0rc11.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- sl_shared_assets-3.0.0rc11.dist-info/entry_points.txt,sha256=UmO1rl7ly9N7HWPwWyP9E0b5KBUStpBo4TRoqNtizDY,430
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- sl_shared_assets-3.0.0rc11.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- sl_shared_assets-3.0.0rc11.dist-info/RECORD,,
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+ sl_shared_assets-3.0.0rc13.dist-info/METADATA,sha256=oNild5LbOuYMHqk6goJETY4V7VzNOuYV2KBIMzRV0eg,49214
33
+ sl_shared_assets-3.0.0rc13.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
34
+ sl_shared_assets-3.0.0rc13.dist-info/entry_points.txt,sha256=UmO1rl7ly9N7HWPwWyP9E0b5KBUStpBo4TRoqNtizDY,430
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+ sl_shared_assets-3.0.0rc13.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ sl_shared_assets-3.0.0rc13.dist-info/RECORD,,