sl-shared-assets 1.0.0rc6__py3-none-any.whl → 1.0.0rc8__py3-none-any.whl

sl_shared_assets/data_classes.py

@@ -13,6 +13,7 @@ import appdirs
 from ataraxis_base_utilities import LogLevel, console, ensure_directory_exists
 from ataraxis_data_structures import YamlConfig
 from ataraxis_time.time_helpers import get_timestamp
+import copy
 
 
 def replace_root_path(path: Path) -> None:
@@ -277,24 +278,27 @@ class ProjectConfiguration(YamlConfig):
             path: The path to the .yaml file to save the data to.
         """
 
+        # Copies instance data to prevent it from being modified by reference when executing the steps below
+        original = copy.deepcopy(self)
+
         # Converts all Path objects to strings before dumping the data, as .yaml encoder does not properly recognize
         # Path objects
-        self.local_root_directory = str(self.local_root_directory)
-        self.local_mesoscope_directory = str(self.local_mesoscope_directory)
-        self.local_nas_directory = str(self.local_nas_directory)
-        self.local_server_directory = str(self.local_server_directory)
-        self.remote_storage_directory = str(self.remote_storage_directory)
-        self.remote_working_directory = str(self.remote_working_directory)
-        self.google_credentials_path = str(self.google_credentials_path)
-        self.server_credentials_path = str(self.server_credentials_path)
-        self.harvesters_cti_path = str(self.harvesters_cti_path)
+        original.local_root_directory = str(original.local_root_directory)
+        original.local_mesoscope_directory = str(original.local_mesoscope_directory)
+        original.local_nas_directory = str(original.local_nas_directory)
+        original.local_server_directory = str(original.local_server_directory)
+        original.remote_storage_directory = str(original.remote_storage_directory)
+        original.remote_working_directory = str(original.remote_working_directory)
+        original.google_credentials_path = str(original.google_credentials_path)
+        original.server_credentials_path = str(original.server_credentials_path)
+        original.harvesters_cti_path = str(original.harvesters_cti_path)
 
         # Converts valve calibration data into dictionary format
-        if isinstance(self.valve_calibration_data, tuple):
-            self.valve_calibration_data = {k: v for k, v in self.valve_calibration_data}
+        if isinstance(original.valve_calibration_data, tuple):
+            original.valve_calibration_data = {k: v for k, v in original.valve_calibration_data}
 
         # Saves the data to the YAML file
-        self.to_yaml(file_path=path)
+        original.to_yaml(file_path=path)
 
         # As part of this runtime, also generates and dumps the 'precursor' experiment configuration file.
         example_experiment = ExperimentConfiguration()
@@ -1024,23 +1028,21 @@ class SessionData(YamlConfig):
         create_session() method runtime.
         """
 
+        # Copies instance data to prevent it from being modified by reference when executing the steps below
+        original = copy.deepcopy(self)
+
         # Extracts the target file path before it is converted to a string.
         file_path: Path = copy.copy(self.raw_data.session_data_path)  # type: ignore
 
         # Converts all Paths objects to strings before dumping the data to YAML.
-        if self.raw_data is not None:
-            self.raw_data.make_string()
-        if self.processed_data is not None:
-            self.processed_data.make_string()
-        if self.persistent_data is not None:
-            self.persistent_data.make_string()
-        if self.mesoscope_data is not None:
-            self.mesoscope_data.make_string()
-        if self.destinations is not None:
-            self.destinations.make_string()
+        original.raw_data.make_string()
+        original.processed_data.make_string()
+        original.persistent_data.make_string()
+        original.mesoscope_data.make_string()
+        original.destinations.make_string()
 
         # Saves instance data as a .YAML file
-        self.to_yaml(file_path=file_path)
+        original.to_yaml(file_path=file_path)
 
 
 @dataclass()
@@ -1364,6 +1366,10 @@ class ProcedureData:
     """Stores surgeon's notes taken during the surgery."""
     post_op_notes: str
     """Stores surgeon's notes taken during the post-surgery recovery period."""
+    surgery_quality: int = 0
+    """Stores the quality of the surgical intervention as a numeric level. 0 indicates unusable (bad) result, 1 
+    indicates usable result that is not good enough to be included in a publication, 2 indicates publication-grade 
+    result."""
 
 
 @dataclass

sl_shared_assets/data_classes.pyi

@@ -604,6 +604,7 @@ class ProcedureData:
     protocol: str
     surgery_notes: str
     post_op_notes: str
+    surgery_quality: int = ...
 
 @dataclass
 class ImplantData:

{sl_shared_assets-1.0.0rc6.dist-info → sl_shared_assets-1.0.0rc8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: sl-shared-assets
-Version: 1.0.0rc6
+Version: 1.0.0rc8
 Summary: Stores assets shared between multiple Sun (NeuroAI) lab data pipelines.
 Project-URL: Homepage, https://github.com/Sun-Lab-NBB/sl-shared-assets
 Project-URL: Documentation, https://sl-shared-assets-api-docs.netlify.app/

{sl_shared_assets-1.0.0rc6.dist-info → sl_shared_assets-1.0.0rc8.dist-info}/RECORD

@@ -2,8 +2,8 @@ sl_shared_assets/__init__.py,sha256=V7EvTTSB_GhetCbyYPg2RoiG1etDVeML5EBWgGvUo7E,
 sl_shared_assets/__init__.pyi,sha256=U5Sma4zenITe0-eI_heTUYh_9P0puhgM3hAdcf-qozk,2532
 sl_shared_assets/cli.py,sha256=CjfuXXj7CeDA2pbCwe5Rad6RDjIqGDud14IUDMdzx_w,2639
 sl_shared_assets/cli.pyi,sha256=X5UdXpkzUw71_ftaIXMsnttIeR15SPVLiECuPge_zw8,1032
-sl_shared_assets/data_classes.py,sha256=JOSaK1aaAvpQe9LzqXNfBF-MRtORt1p8tTltlDrnS7k,86614
-sl_shared_assets/data_classes.pyi,sha256=b42VCMyRJIiOpRQHCfgaZYcH91xgm1ymzHfA3N4vY88,32209
+sl_shared_assets/data_classes.py,sha256=Gilip0hQJqNS7SJSDK0crXy4eiD6Ws_OO5cBGInqaGw,87076
+sl_shared_assets/data_classes.pyi,sha256=5l2snWnlqTXGiJldGLvI4sc2G2_08aw9bFIOi_RmgjE,32240
 sl_shared_assets/packaging_tools.py,sha256=3kAXFK37Lv4JA1YhjcoBz1x2Ell8ObCqe9pwxAts4m4,6709
 sl_shared_assets/packaging_tools.pyi,sha256=hlAP9AxF7NHtFIPKjj5ehm8Vr9qIn6xDk4VvL0JuAmk,3055
 sl_shared_assets/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -13,8 +13,8 @@ sl_shared_assets/suite2p.py,sha256=sQ5Zj0TJFD-gUHqtWnRvapBpr8QgmaiVil123cWxGxc,2
 sl_shared_assets/suite2p.pyi,sha256=Uyv8ov--etwJIc6e2UVgs0jYXwnK2CD-kICfXo5KpcI,6331
 sl_shared_assets/transfer_tools.py,sha256=J26kwOp_NpPSY0-xu5FTw9udte-rm_mW1FJyaTNoqQI,6606
 sl_shared_assets/transfer_tools.pyi,sha256=FoH7eYZe7guGHfPr0MK5ggO62uXKwD2aJ7h1Bu7PaEE,3294
-sl_shared_assets-1.0.0rc6.dist-info/METADATA,sha256=HKC5KfyBloEjbXve5EPtwKtq-tMwHmx8U8ABZ1ux6DI,47806
-sl_shared_assets-1.0.0rc6.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-sl_shared_assets-1.0.0rc6.dist-info/entry_points.txt,sha256=3VPr5RkWBkusNN9OhWXtC-DN0utu7uMrUulazIK2VNA,166
-sl_shared_assets-1.0.0rc6.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-sl_shared_assets-1.0.0rc6.dist-info/RECORD,,
+sl_shared_assets-1.0.0rc8.dist-info/METADATA,sha256=6Omp-WLRWXVniIkMLG6SyujEEiJuptEk-2f1SQgA4m0,47806
+sl_shared_assets-1.0.0rc8.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+sl_shared_assets-1.0.0rc8.dist-info/entry_points.txt,sha256=3VPr5RkWBkusNN9OhWXtC-DN0utu7uMrUulazIK2VNA,166
+sl_shared_assets-1.0.0rc8.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+sl_shared_assets-1.0.0rc8.dist-info/RECORD,,