skinoptics 0.0.2__py3-none-any.whl → 0.0.4__py3-none-any.whl

skinoptics/__init__.py

@@ -15,14 +15,13 @@ Copyright (C) 2024-2025 Victor Lima
     | along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 | Victor Lima
-| victorporto\@ifsc.usp.br
 | victor.lima\@ufscar.br
 | victorportog.github.io
 
 | Release date:
 | October 2024
 | Last modification:
-| March 2025
+| October 2025
 
 | Version History:
 | available at <https://pypi.org/project/skinoptics/#history>
@@ -35,7 +34,7 @@ __all__ = ['utils', 'dataframes',
 
 __version__major = '0'
 __version__minor = '0'
-__version__micro = '2'
+__version__micro = '4'
 #__version__suffix = 'b1'
 
 __author__ = "Victor Lima"
@@ -43,5 +42,5 @@ __copyright__ = "Copyright (c) 2024-2025 Victor Lima"
 __license__ = "GNU General Public License v3.0"
 __maintainer__ = "Victor Lima"
 __version__ = '.'.join((__version__major, __version__minor, __version__micro)) # + __version__suffix
-__email__ = "victorporto@ifsc.usp.br, victor.lima@ufscar.br"
+__email__ = "victor.lima@ufscar.br"
 __status__ = "Development"

skinoptics/colors.py

@@ -84,11 +84,15 @@
 | https://doi.org/10.25039/CIE.DS.8jsxjrsn
 
 | [CIE18b] CIE 2018.
-| CIE standard illuminant D55.
-| https://doi.org/10.25039/CIE.DS.qewfb3kp
+| Relative spectral power distributions of CIE illuminant C.
+| https://doi.org/10.25039/CIE.DS.mjdd2enu
 
 | [CIE18c] CIE 2018.
-| CIE standard illuminant D75.
+| Relative spectral power distributions of CIE illuminant D55.
+| https://doi.org/10.25039/CIE.DS.qewfb3kp
+
+| [CIE18d] CIE 2018.
+| Relative spectral power distributions of CIE illuminant D75.
 | https://doi.org/10.25039/CIE.DS.9fvcmrk4
 
 | [CIE19a] CIE 2019.
@@ -123,23 +127,24 @@ def rspd(lambda0, illuminant):
     r'''
     | The relative spectral power distribution S(:math:`\lambda`) of a chosen standard illuminant
     | as a function of wavelength.
-    | Linear interpolation of data from CIE datasets [CIE18a] [CIE22a] [CIE18b] [CIE22b] [CIE18c].
+    | Linear interpolation of data from CIE datasets [CIE18a] [CIE18b] [CIE22a] [CIE18c] [CIE22b] [CIE18d].
     
     | wavelength range:
     | [300 nm, 830 nm] (at 1 nm intervals, for illuminant = 'A', 'D50' or 'D65')
-    | or [300 nm, 780 nm] (at 5 nm intervals, for illuminant = 'D55' or 'D75')
+    | or [300 nm, 780 nm] (at 5 nm intervals, for illuminant = 'C', 'D55' or 'D75')
     
     :param lambda0: wavelength [nm] (must be in range [300 nm, 830 nm] or [300 nm, 780 nm])
     :type lambda0: float or np.ndarray
     
-    :param illuminant: the user can choose one of the following... 'A', 'D50', 'D55', 'D65' or 'D75'
+    :param illuminant: the user can choose one of the following... 'A', 'C', 'D50', 'D55', 'D65' or 'D75'
     :type illuminant: str
 
     | 'A' refers to the CIE standard illuminant A
+    | 'C' refers to the CIE illuminant C
     | 'D50' refers to the CIE standard illuminant D50
-    | 'D55' refers to the CIE standard illuminant D55
+    | 'D55' refers to the CIE  illuminant D55
     | 'D65' refers to the CIE standard illuminant D65
-    | 'D75' refers to the CIE standard illuminant D75
+    | 'D75' refers to the CIE illuminant D75
     
     :return: - **rspd** (*float or np.ndarray*) – relative spectral power distribution [-]
     '''
@@ -153,7 +158,7 @@ def rspd(lambda0, illuminant):
             if lambda0 < 300 or lambda0 > 830:
                 msg = 'The input lambda0 = {} nm is out of the range [300 nm, 830 nm].'.format(lambda0)
                 raise Exception(msg)
-    elif illuminant == 'D55' or 'D75':
+    elif illuminant == 'C' or 'D55' or 'D75':
         if isinstance(lambda0, np.ndarray) == True:
             if np.any(lambda0 < 300) or np.any(lambda0 > 780):
                 msg = 'At least one element in the input lambda0 is out of the range [300 nm, 780 nm].'
@@ -166,18 +171,21 @@ def rspd(lambda0, illuminant):
     if illuminant == 'A': 
         rspd = interp1d(np.array(rspds_A_D50_D65_dataframe)[:,0],
                         np.array(rspds_A_D50_D65_dataframe)[:,1])(lambda0)
+    elif illuminant == 'C':
+        rspd = interp1d(np.array(rspds_C_D55_D75_dataframe)[:,0],
+                        np.array(rspds_C_D55_D75_dataframe)[:,1])(lambda0)
     elif illuminant == 'D50':
         rspd = interp1d(np.array(rspds_A_D50_D65_dataframe)[:,0],
                         np.array(rspds_A_D50_D65_dataframe)[:,2])(lambda0)
     elif illuminant == 'D55':
-        rspd = interp1d(np.array(rspds_D55_D75_dataframe)[:,0],
-                        np.array(rspds_D55_D75_dataframe)[:,1])(lambda0)
+        rspd = interp1d(np.array(rspds_C_D55_D75_dataframe)[:,0],
+                        np.array(rspds_C_D55_D75_dataframe)[:,2])(lambda0)
     elif illuminant == 'D65':
         rspd = interp1d(np.array(rspds_A_D50_D65_dataframe)[:,0],
                         np.array(rspds_A_D50_D65_dataframe)[:,3])(lambda0)
     elif illuminant == 'D75':
-        rspd = interp1d(np.array(rspds_D55_D75_dataframe)[:,0],
-                        np.array(rspds_D55_D75_dataframe)[:,2])(lambda0)
+        rspd = interp1d(np.array(rspds_C_D55_D75_dataframe)[:,0],
+                        np.array(rspds_C_D55_D75_dataframe)[:,3])(lambda0)
     else:
         msg = 'The input illuminant = {} is not valid.'.format(illuminant)
         raise Exception(msg)
@@ -1140,14 +1148,12 @@ def Delta_E(L0, a0, b0, L1, a1, b1):
 
 def Delta_E_00(L0, a0, b0, L1, a1, b1, kL = 1., kC = 1., kH = 1.):
     r'''
-    Calculate the CIEDE2000 color difference :math:`\Delta E^*_{00}` between
-    a reference color (:math:`L^*_0`, :math:`a^*_0`, :math:`b^*_0`) and
-    a test color (:math:`L^*_1`, :math:`a^*_1`, :math:`b^*_1`).
+    | Calculate the CIEDE2000 color difference :math:`\Delta E^*_{00}` between
+    | a reference color (:math:`L^*_0`, :math:`a^*_0`, :math:`b^*_0`) and a test color (:math:`L^*_1`, :math:`a^*_1`, :math:`b^*_1`).
+    | For details please check Sharma, Wu & Dalal 2004 [SWD04] and ISO/CIE 2014 [IC14].
 
     :math:`\Delta E^*_{00} = \sqrt{\left(\frac{\Delta L'}{k_L S_L}\right)^2 + \left(\frac{\Delta C'}{k_C S_C}\right)^2 + \left(\frac{\Delta H'}{k_H S_H}\right)^2 + R_T \left(\frac{\Delta C'}{k_C S_C}\right) \left(\frac{\Delta H'}{k_H S_H}\right)}`
 
-    | For details please check Sharma, Wu & Dalal 2004 [SWD04] and ISO/CIE 2014 [IC14].
-
     :param L0: reference color L* coordinate [-]
     :type L0: float or np.ndarray
     
@@ -1311,7 +1317,7 @@ def XYZ_from_spectrum(all_lambda, spectrum, lambda_min = 360., lambda_max = 830.
     | Calculate the CIE XYZ coordinates from the reflectance spectrum :math:`R(\lambda)` or the
     | transmittance spectrum :math:`T(\lambda)` for a chosen standard illuminant and standard observer.
     | Integration using the composite trapezoid rule from 360 nm to 830 nm (as default).
-    | If the wavelength array does not cover the whole region, a constant extrapolation is perfomed.
+    | If the wavelength array does not cover the entire region, a constant extrapolation is perfomed.
     | For details please check CIE [CIE04] (see their section 7).
     
     | :math:`X = \frac{K}{N} \int_\lambda \mbox{ } R(\lambda) \mbox{ } S(\lambda) \mbox{ } \bar{x}(\lambda) \mbox{ } d\lambda`

skinoptics/dataframes.py

@@ -90,9 +90,16 @@ oxy_and_deo_Bosschaart_dataframe = pd.read_csv(os.path.join(folder1, 'oxy_and_de
 folder2 = os.path.join(folder0, 'datasets', 'colors')
 
 rspds_A_D50_D65_dataframe = pd.read_csv(os.path.join(folder2, 'rspds_A_D50_D65.txt'), sep = ' ')
-rspds_D55_D75_dataframe = pd.read_csv(os.path.join(folder2, 'rspds_D55_D75.txt'), sep = ' ')
+rspds_C_D55_D75_dataframe = pd.read_csv(os.path.join(folder2, 'rspds_C_D55_D75.txt'), sep = ' ')
 cmfs_dataframe = pd.read_csv(os.path.join(folder2, 'cmfs.txt'), sep = ' ')
 
 Lab_Alaluf2002_dataframe = pd.read_csv(os.path.join(folder2, 'Lab_Alaluf2002.txt'), sep = ' ')
 Lab_Xiao2017_dataframe = pd.read_csv(os.path.join(folder2, 'Lab_Xiao2017.txt'), sep = ' ')
 Sharma2004_TableI_dataframe = pd.read_csv(os.path.join(folder2, 'Sharma2004_TableI.txt'), sep = ' ')
+
+folder3 = os.path.join(folder0, 'datasets', 'spectra')
+
+Xiao2016_dataframe = pd.read_excel(os.path.join(folder2, 'Xiao2016', 'skindatabaseSpectra',
+                                                'skin_spectra_data.xlsx'))
+Lu2025_dataframe = pd.read_excel(os.path.join(folder2, 'Lu2025', 'ISSA_17_Jan_2025_Yan_Lu.xlsx'),
+                                 sheet_name = 'ISSA', header = 0, skiprows = 11).replace('nan', np.nan)

skinoptics/datasets/colors/rspds_C_D55_D75.txt

@@ -0,0 +1,98 @@
+wavelength rspd_C[-] rspd_D55[-] rspd_D75[-]
+300 0.00 0.02400 0.04300
+305 0.00 1.04800 2.58800
+310 0.00 2.07200 5.13300
+315 0.00 6.64800 17.4700
+320 0.01 11.2240 29.8080
+325 0.20 15.9360 42.3690
+330 0.40 20.6470 54.9300
+335 1.55 22.2660 56.0950
+340 2.70 23.8850 57.2590
+345 4.85 25.8510 60.0000
+350 7.00 27.8170 62.7400
+355 9.95 29.2190 62.8610
+360 12.90 30.6210 62.9820
+365 17.20 32.4640 66.6470
+370 21.40 34.3080 70.3120
+375 27.50 33.4460 68.5070
+380 33.00 32.5840 66.7030
+385 39.92 35.3350 68.3330
+390 47.40 38.0870 69.9630
+395 55.17 49.5180 85.9460
+400 63.30 60.9490 101.929
+405 71.81 64.7510 106.911
+410 80.60 68.5540 111.894
+415 89.53 70.0650 112.346
+420 98.10 71.5770 112.798
+425 105.80 69.7460 107.945
+430 112.40 67.9140 103.092
+435 117.75 76.7600 112.145
+440 121.50 85.6050 121.198
+445 123.45 91.7990 127.104
+450 124.00 97.9930 133.010
+455 123.60 99.2280 132.682
+460 123.10 100.463 132.355
+465 123.30 100.188 129.838
+470 123.80 99.9130 127.322
+475 124.09 101.326 127.061
+480 123.90 102.739 126.800
+485 122.92 100.409 122.291
+490 120.70 98.0780 117.783
+495 116.90 99.3790 117.186
+500 112.10 100.680 116.589
+505 106.98 100.688 115.146
+510 102.30 100.695 113.702
+515 98.81 100.341 111.181
+520 96.90 99.9870 108.659
+525 96.78 102.098 109.552
+530 98.00 104.210 110.445
+535 99.94 103.156 108.367
+540 102.10 102.102 106.289
+545 103.95 102.535 105.596
+550 105.20 102.968 104.904
+555 105.67 101.484 102.452
+560 105.30 100.000 100.000
+565 104.11 98.6080 97.8080
+570 102.30 97.2160 95.6160
+575 100.15 97.4820 94.9140
+580 97.80 97.7490 94.2130
+585 95.43 94.5900 90.6050
+590 93.20 91.4320 86.9970
+595 91.22 92.9260 87.1120
+600 89.70 94.4190 87.2270
+605 88.83 94.7800 86.6840
+610 88.40 95.1400 86.1400
+615 88.19 94.6800 84.8610
+620 88.10 94.2200 83.5810
+625 88.06 92.3340 81.1640
+630 88.00 90.4480 78.7470
+635 87.86 91.3890 78.5870
+640 87.80 92.3300 78.4280
+645 87.99 90.5920 76.6140
+650 88.20 88.8540 74.8010
+655 88.20 89.5860 74.5620
+660 87.90 90.3170 74.3240
+665 87.22 92.1330 74.8730
+670 86.30 93.9500 75.4220
+675 85.30 91.9530 73.4990
+680 84.00 89.9560 71.5760
+685 82.21 84.8170 67.7140
+690 80.20 79.6770 63.8520
+695 78.24 81.2580 64.4640
+700 76.30 82.8400 65.0760
+705 74.36 83.8420 66.5730
+710 72.40 84.8440 68.0700
+715 70.40 77.5390 62.2560
+720 68.30 70.2350 56.4430
+725 66.30 74.7680 60.3430
+730 64.40 79.3010 64.2420
+735 62.80 82.1470 66.6970
+740 61.50 84.9930 69.1510
+745 60.20 78.4370 63.8900
+750 59.20 71.8800 58.6290
+755 58.50 62.3370 50.6230
+760 58.10 52.7930 42.6170
+765 58.00 64.3600 51.9850
+770 58.20 75.9270 61.3520
+775 58.50 73.8720 59.8380
+780 59.10 71.8180 58.324

{skinoptics-0.0.2.dist-info → skinoptics-0.0.4.dist-info}/METADATA

@@ -1,8 +1,8 @@
 Metadata-Version: 2.4
 Name: skinoptics
-Version: 0.0.2
+Version: 0.0.4
 Summary: SkinOptics: a python package with tools for building human skin computational models for Monte Carlo simulations of light transport
-Author-email: Victor Lima <victorporto@ifsc.usp.br>
+Author-email: Victor Lima <victor.lima@ufscar.br>
 Project-URL: Homepage, https://github.com/victorportog/skinoptics
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
@@ -10,7 +10,7 @@ Classifier: Operating System :: Microsoft :: Windows :: Windows 10
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE.txt
-Requires-Dist: numpy<3.0.0,>=1.26.4
+Requires-Dist: numpy<3.0.0,>=2.3.4
 Requires-Dist: scipy<2.0.0,>=1.13.0
 Requires-Dist: pandas<3.0.0,>=2.2.2
 Dynamic: license-file

{skinoptics-0.0.2.dist-info → skinoptics-0.0.4.dist-info}/RECORD

@@ -1,8 +1,8 @@
-skinoptics/__init__.py,sha256=GXx08uOCJc0vPjnDTWJKjcYDHFkAlu3MofZ-K2tFmMg,1575
+skinoptics/__init__.py,sha256=P0xQ29e4BbD6YQBJdgC1KPsD--oB3MWpUqDjfpiTm9Y,1525
 skinoptics/absorption_coefficient.py,sha256=lg4B1j_QNwnuATomFyBOCEe5hfM6AIl5ROsDpaGpIzs,36264
 skinoptics/anisotropy_factor.py,sha256=s-moy9nWkD87NEJMjrVXuIItqj0xIdbTykZoVQtQaRw,37612
-skinoptics/colors.py,sha256=0RORMjmBtDEUsV3S4uv3zwA9sFU_HkzypstTTCl7RUI,60914
-skinoptics/dataframes.py,sha256=vZ_YrAc1aEORErxFNmw_3cLasYTbF2YIF1WYccYoiWg,6461
+skinoptics/colors.py,sha256=R1HbJBv4Lw8Vq7Bmwa8ccjqqfAsictcjycwg4HT1rAk,61331
+skinoptics/dataframes.py,sha256=VOAzaLcRALAjlAKfSeNTeQf6BcrJVCFby92DlTJ_L4c,6891
 skinoptics/refractive_index.py,sha256=H6CTjbGfdUEOyGPQSwQiH018exvdpq8-XuKJmpufUfU,14553
 skinoptics/scattering_coefficient.py,sha256=WNwJOWgBkihIEcREvSVVZK-AiDhqw5_amhxjrMJcOb0,15217
 skinoptics/utils.py,sha256=p1nnHICf_hrmZc45nYSlJPhqfQIoE-qN1MYq6ciE0R0,10452
@@ -11,7 +11,7 @@ skinoptics/datasets/colors/Lab_Xiao2017.txt,sha256=fx7y84PN5OFSDH6Z4rUNML6U8QOnH
 skinoptics/datasets/colors/Sharma2004_TableI.txt,sha256=uSSZClAYkR0WbGjZHLZ7jZD6EAy136U6150ggKruk6k,7454
 skinoptics/datasets/colors/cmfs.txt,sha256=q4Veg2SoCipCBRj2DL5pSzEH5RW4YORUmXxyVytB7KE,44381
 skinoptics/datasets/colors/rspds_A_D50_D65.txt,sha256=eV5hU07TI1wJZpLy0F54VYd--_Bh-WJ7XCWhca27YyA,15978
-skinoptics/datasets/colors/rspds_D55_D75.txt,sha256=UGljPp6-OiJewAEuSRptJ6Iof1IkioFndfBe6g_l8Xw,1974
+skinoptics/datasets/colors/rspds_C_D55_D75.txt,sha256=4WLGQyNUd87uZwMfmLHbk2xKhiM3Yg0s-lVV1oYLzoE,2579
 skinoptics/datasets/optical_properties/DE_Salomatina.txt,sha256=pNGNevgAaj_h8PaWP1zqOEO0WEQG-a4k1rbDt5AdmXU,24624
 skinoptics/datasets/optical_properties/DE_Shimojo.txt,sha256=g847CsdYbbOqqnoyPJs1XYVaiyEnPZWZHnEK-zzRfPo,281
 skinoptics/datasets/optical_properties/EP_Salomatina.txt,sha256=87UjyYbKBP0k__g_N1j3NuBvZybnEJZ7bKDYSsfxJkM,22791
@@ -36,10 +36,11 @@ skinoptics/datasets/optical_properties/n_and_k_EP_Ding.txt,sha256=fNJRTLxfGn0Pwu
 skinoptics/datasets/optical_properties/n_and_k_wat_Hale.txt,sha256=9Npq4eb94K5Nan7QnJazUnCl-6SBE33cTxddfjtWwb4,3045
 skinoptics/datasets/optical_properties/n_and_k_wat_Segelstein.txt,sha256=EZIS5158tj2MIAdDQLZH6L3BqopaMO0i2erJTdCywXs,36593
 skinoptics/datasets/optical_properties/oxy_and_deo_Bosschaart.txt,sha256=eF96Ao44TDUYRo6-8p0L7I9Q8h6wLNpEUyrcbo7FySA,24972
+skinoptics/datasets/spectra/Lu2025/ISSA_17_Jan_2025_Yan_Lu.xlsx,sha256=c5aqdgjxpvkexwv4-EISUqnYH3GivKBm636YFVudEWE,9320520
 skinoptics/datasets/spectra/Xiao2016/skindatabaseSpectra/readmeSpectra.docx,sha256=ren4htGe154BIlBridkvBvbc8AYY1RRmp4CVICYwDvc,15147
-skinoptics/datasets/spectra/Xiao2016/skindatabaseSpectra/skin spectra data.xlsx,sha256=z7shS1rZzqpaRGi_Ji0nYcSzIxEmADQOtaJ_Uwcotcc,1434709
-skinoptics-0.0.2.dist-info/licenses/LICENSE.txt,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-skinoptics-0.0.2.dist-info/METADATA,sha256=JMZNOb1Gd1NuJ_bIqsYZNfV6DMkS-F2cOeBX7phJrvs,1291
-skinoptics-0.0.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-skinoptics-0.0.2.dist-info/top_level.txt,sha256=4NYJW3uliYlvbd-Zywg2MxJOGe4wYA7Oz_I5EZF4YEQ,11
-skinoptics-0.0.2.dist-info/RECORD,,
+skinoptics/datasets/spectra/Xiao2016/skindatabaseSpectra/skin_spectra_data.xlsx,sha256=z7shS1rZzqpaRGi_Ji0nYcSzIxEmADQOtaJ_Uwcotcc,1434709
+skinoptics-0.0.4.dist-info/licenses/LICENSE.txt,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+skinoptics-0.0.4.dist-info/METADATA,sha256=Unh8hJJaC0fD4SaJbfyIyPSWgbvkf5kiCFMMtkfCYYQ,1288
+skinoptics-0.0.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+skinoptics-0.0.4.dist-info/top_level.txt,sha256=4NYJW3uliYlvbd-Zywg2MxJOGe4wYA7Oz_I5EZF4YEQ,11
+skinoptics-0.0.4.dist-info/RECORD,,

skinoptics/datasets/colors/rspds_D55_D75.txt

@@ -1,98 +0,0 @@
-wavelength rspd_D55[-] rspd_D75[-]
-300 0.02400 0.04300
-305 1.04800 2.58800
-310 2.07200 5.13300
-315 6.64800 17.4700
-320 11.2240 29.8080
-325 15.9360 42.3690
-330 20.6470 54.9300
-335 22.2660 56.0950
-340 23.8850 57.2590
-345 25.8510 60.0000
-350 27.8170 62.7400
-355 29.2190 62.8610
-360 30.6210 62.9820
-365 32.4640 66.6470
-370 34.3080 70.3120
-375 33.4460 68.5070
-380 32.5840 66.7030
-385 35.3350 68.3330
-390 38.0870 69.9630
-395 49.5180 85.9460
-400 60.9490 101.929
-405 64.7510 106.911
-410 68.5540 111.894
-415 70.0650 112.346
-420 71.5770 112.798
-425 69.7460 107.945
-430 67.9140 103.092
-435 76.7600 112.145
-440 85.6050 121.198
-445 91.7990 127.104
-450 97.9930 133.010
-455 99.2280 132.682
-460 100.463 132.355
-465 100.188 129.838
-470 99.9130 127.322
-475 101.326 127.061
-480 102.739 126.800
-485 100.409 122.291
-490 98.0780 117.783
-495 99.3790 117.186
-500 100.680 116.589
-505 100.688 115.146
-510 100.695 113.702
-515 100.341 111.181
-520 99.9870 108.659
-525 102.098 109.552
-530 104.210 110.445
-535 103.156 108.367
-540 102.102 106.289
-545 102.535 105.596
-550 102.968 104.904
-555 101.484 102.452
-560 100.000 100.000
-565 98.6080 97.8080
-570 97.2160 95.6160
-575 97.4820 94.9140
-580 97.7490 94.2130
-585 94.5900 90.6050
-590 91.4320 86.9970
-595 92.9260 87.1120
-600 94.4190 87.2270
-605 94.7800 86.6840
-610 95.1400 86.1400
-615 94.6800 84.8610
-620 94.2200 83.5810
-625 92.3340 81.1640
-630 90.4480 78.7470
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