siibra 1.0a14__py3-none-any.whl → 1.0.1a0__py3-none-any.whl

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Files changed (80) hide show
  1. siibra/VERSION +1 -1
  2. siibra/__init__.py +15 -5
  3. siibra/commons.py +3 -48
  4. siibra/configuration/__init__.py +1 -1
  5. siibra/configuration/configuration.py +1 -1
  6. siibra/configuration/factory.py +164 -127
  7. siibra/core/__init__.py +1 -1
  8. siibra/core/assignment.py +1 -1
  9. siibra/core/atlas.py +24 -17
  10. siibra/core/concept.py +18 -9
  11. siibra/core/parcellation.py +76 -55
  12. siibra/core/region.py +163 -183
  13. siibra/core/space.py +3 -1
  14. siibra/core/structure.py +1 -2
  15. siibra/exceptions.py +17 -1
  16. siibra/experimental/contour.py +6 -6
  17. siibra/experimental/patch.py +2 -2
  18. siibra/experimental/plane3d.py +8 -8
  19. siibra/explorer/__init__.py +1 -1
  20. siibra/explorer/url.py +15 -0
  21. siibra/explorer/util.py +1 -1
  22. siibra/features/__init__.py +1 -1
  23. siibra/features/anchor.py +13 -14
  24. siibra/features/connectivity/__init__.py +1 -1
  25. siibra/features/connectivity/functional_connectivity.py +1 -1
  26. siibra/features/connectivity/regional_connectivity.py +7 -5
  27. siibra/features/connectivity/streamline_counts.py +1 -1
  28. siibra/features/connectivity/streamline_lengths.py +1 -1
  29. siibra/features/connectivity/tracing_connectivity.py +1 -1
  30. siibra/features/dataset/__init__.py +1 -1
  31. siibra/features/dataset/ebrains.py +1 -1
  32. siibra/features/feature.py +50 -28
  33. siibra/features/image/__init__.py +1 -1
  34. siibra/features/image/image.py +18 -13
  35. siibra/features/image/sections.py +1 -1
  36. siibra/features/image/volume_of_interest.py +1 -1
  37. siibra/features/tabular/__init__.py +1 -1
  38. siibra/features/tabular/bigbrain_intensity_profile.py +2 -2
  39. siibra/features/tabular/cell_density_profile.py +102 -66
  40. siibra/features/tabular/cortical_profile.py +5 -3
  41. siibra/features/tabular/gene_expression.py +1 -1
  42. siibra/features/tabular/layerwise_bigbrain_intensities.py +1 -1
  43. siibra/features/tabular/layerwise_cell_density.py +8 -25
  44. siibra/features/tabular/receptor_density_fingerprint.py +5 -3
  45. siibra/features/tabular/receptor_density_profile.py +5 -3
  46. siibra/features/tabular/regional_timeseries_activity.py +7 -5
  47. siibra/features/tabular/tabular.py +5 -3
  48. siibra/livequeries/__init__.py +1 -1
  49. siibra/livequeries/allen.py +46 -20
  50. siibra/livequeries/bigbrain.py +9 -9
  51. siibra/livequeries/ebrains.py +1 -1
  52. siibra/livequeries/query.py +1 -2
  53. siibra/locations/__init__.py +10 -10
  54. siibra/locations/boundingbox.py +77 -38
  55. siibra/locations/location.py +12 -4
  56. siibra/locations/point.py +14 -9
  57. siibra/locations/{pointset.py → pointcloud.py} +69 -27
  58. siibra/retrieval/__init__.py +1 -1
  59. siibra/retrieval/cache.py +1 -1
  60. siibra/retrieval/datasets.py +1 -1
  61. siibra/retrieval/exceptions/__init__.py +1 -1
  62. siibra/retrieval/repositories.py +10 -27
  63. siibra/retrieval/requests.py +20 -3
  64. siibra/vocabularies/__init__.py +1 -1
  65. siibra/volumes/__init__.py +2 -2
  66. siibra/volumes/parcellationmap.py +121 -94
  67. siibra/volumes/providers/__init__.py +1 -1
  68. siibra/volumes/providers/freesurfer.py +1 -1
  69. siibra/volumes/providers/gifti.py +1 -1
  70. siibra/volumes/providers/neuroglancer.py +68 -42
  71. siibra/volumes/providers/nifti.py +18 -28
  72. siibra/volumes/providers/provider.py +2 -2
  73. siibra/volumes/sparsemap.py +128 -247
  74. siibra/volumes/volume.py +252 -65
  75. {siibra-1.0a14.dist-info → siibra-1.0.1a0.dist-info}/METADATA +17 -4
  76. siibra-1.0.1a0.dist-info/RECORD +84 -0
  77. {siibra-1.0a14.dist-info → siibra-1.0.1a0.dist-info}/WHEEL +1 -1
  78. siibra-1.0a14.dist-info/RECORD +0 -84
  79. {siibra-1.0a14.dist-info → siibra-1.0.1a0.dist-info}/LICENSE +0 -0
  80. {siibra-1.0a14.dist-info → siibra-1.0.1a0.dist-info}/top_level.txt +0 -0
siibra-1.0a14.dist-info/RECORD DELETED
@@ -1,84 +0,0 @@
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