siibra 1.0.1a5__py3-none-any.whl → 1.0.1a7__py3-none-any.whl

siibra/VERSION

@@ -1 +1 @@
-1.0.1-alpha.5
+1.0.1-alpha.7

siibra/features/tabular/layerwise_cell_density.py

@@ -84,17 +84,20 @@ class LayerwiseCellDensity(
             )
             fields = cellfile.split("/")
             for layer in layer_volumes.index:
-                data.append({
-                    'layer': layer,
-                    'layername': layers["Name"].loc[layer],
-                    'counts': counts.loc[layer],
-                    'area_mu2': layers["Area(micron**2)"].loc[layer],
-                    'volume': layer_volumes.loc[layer],
-                    'density': counts.loc[layer] / layer_volumes.loc[layer],
-                    'regionspec': fields[-5],
-                    'section': int(fields[-3]),
-                    'patch': int(fields[-2]),
-                })
+                try:
+                    data.append({
+                        'layer': layer,
+                        'layername': layers["Name"].loc[layer],
+                        'counts': counts.loc[layer],
+                        'area_mu2': layers["Area(micron**2)"].loc[layer],
+                        'volume': layer_volumes.loc[layer],
+                        'density': counts.loc[layer] / layer_volumes.loc[layer],
+                        'regionspec': fields[-5],
+                        'section': int(fields[-3]),
+                        'patch': int(fields[-2]),
+                    })
+                except KeyError:
+                    continue
         return pd.DataFrame(data)
 
     @property

siibra/locations/location.py

@@ -31,7 +31,8 @@ class Location(BrainStructure):
     """
 
     # backend for transforming coordinates between spaces
-    SPACEWARP_SERVER = "https://hbp-spatial-backend.apps.hbp.eu/v1"
+    # for detail, see https://github.com/HumanBrainProject/hbp-spatial-backend
+    SPACEWARP_SERVER = "https://siibra-spatial-backend.apps.ebrains.eu/v1"
 
     # lookup of space identifiers to be used by SPACEWARP_SERVER
     SPACEWARP_IDS = {

{siibra-1.0.1a5.dist-info → siibra-1.0.1a7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: siibra
-Version: 1.0.1a5
+Version: 1.0.1a7
 Summary: siibra - Software interfaces for interacting with brain atlases
 Home-page: https://github.com/FZJ-INM1-BDA/siibra-python
 Author: Big Data Analytics Group, Forschungszentrum Juelich, Institute of Neuroscience and Medicine (INM-1)

{siibra-1.0.1a5.dist-info → siibra-1.0.1a7.dist-info}/RECORD

@@ -1,4 +1,4 @@
-siibra/VERSION,sha256=ipm-gM9pHLEb5l5Cx8ZcZ8wKJBYKiaWH87grIEoJ_OM,14
+siibra/VERSION,sha256=f2RISlKPjcRUgbF4Sy0G6Dt5Xz_DBE4RwqJSDaRm5TU,14
 siibra/__init__.py,sha256=1uWhsE93KG4N9wiWoMdEokUXxfoRcyznXDktjAGhpEI,4496
 siibra/commons.py,sha256=KmbRdX6pfKTgIgbYufxhkE9YiLQ35GObbw6VyFdRm_w,28016
 siibra/exceptions.py,sha256=6MlXOadwXcCsceOE4lmy4fLJyAaBCCVvJF6BZlMYjU8,1371
@@ -37,7 +37,7 @@ siibra/features/tabular/cell_density_profile.py,sha256=ScpjD9W-w-lLxdG6q42Zfyqe8
 siibra/features/tabular/cortical_profile.py,sha256=x0TqZh8FzcVx13EwPtbt8kBYfF1dREWWuf9BhpWzj7o,12542
 siibra/features/tabular/gene_expression.py,sha256=8gJuUrL13oIySOPgiy5j46a5Udae_cJ1_QfrUHA72CI,10309
 siibra/features/tabular/layerwise_bigbrain_intensities.py,sha256=iFCNG641yCSuIXFTY30xgRQqLERDHMqJrAy3SdKkAJ4,2118
-siibra/features/tabular/layerwise_cell_density.py,sha256=MYFiUfDfx6XQj8dezV5-3eKWBg0VOn0T3a1utELE2PM,6513
+siibra/features/tabular/layerwise_cell_density.py,sha256=nMgREMddxff-nW43wnLGfaYTDaapiSu2z2vyHfaUm0M,6640
 siibra/features/tabular/receptor_density_fingerprint.py,sha256=CvFJv940whxzavhEQWnTjueDEq0ZoiuYVpqUpR8t-Ec,8065
 siibra/features/tabular/receptor_density_profile.py,sha256=VW2Ry8ifQLfmiBDKqIdvaN7K1YzMENGU92Lnm4wA8P0,3724
 siibra/features/tabular/regional_timeseries_activity.py,sha256=wuno4oI1I-dyxRr8-tLFj42iaD6dYZiPigCqVMhrG50,10027
@@ -50,7 +50,7 @@ siibra/livequeries/query.py,sha256=P_uUVFxv4KyOPQXh2WnDQxuaSSBK_dXPKEr8I0-4xSQ,1
 siibra/locations/__init__.py,sha256=yTJVMdv-pICm_gUYLQ09lDKSkZBfgUihM6LNv07e_yk,3546
 siibra/locations/boundingbox.py,sha256=ACRittMABMZwLPzGnv5Z5E6cIHJfCFWv851s5Bg87WQ,16442
 siibra/locations/experimental.py,sha256=kd9yroLKpnY-N6hoMVgtHK4pVdgeGqhpad4GyxYy6LU,14484
-siibra/locations/location.py,sha256=tb__0td1c7_3BKJFqqEqwspO5m8BZ8ZlyYwvtVBq8SY,4706
+siibra/locations/location.py,sha256=ay2UoyQZdnzdCMAwpK-evnnzx4DCVEhbQRz55EzerfI,4792
 siibra/locations/point.py,sha256=cL2hqbejec24ZoXpbBQQXtHZ-H7KcyxnbITzSBjkXTs,12675
 siibra/locations/pointcloud.py,sha256=AxtR43xG4i1hUXNmal4F_g5WKQo_A1ZtW4l4jsf3p6o,14108
 siibra/retrieval/__init__.py,sha256=E-UA8rDQZFGkHmAcmit6siONo7G2mH_Y0xgLlR1RfvY,1062
@@ -73,8 +73,8 @@ siibra/volumes/providers/gifti.py,sha256=JGuixlSJTVjbDU_M5oMDCV8BAwIzuczhnI-qZ7L
 siibra/volumes/providers/neuroglancer.py,sha256=b3TiJ6yrx_akLFKgHRKZyHculzzRIqbZ7U3TMQHy6-k,28618
 siibra/volumes/providers/nifti.py,sha256=aAzkmeDZaXRZ-dkAeEb2cSywNn9WzIz0z7yFtN6iNpU,10135
 siibra/volumes/providers/provider.py,sha256=Vn02au_LKynO5SIfqLyjqzxCf7JD9Wm4i7yEFcTX0WU,3585
-siibra-1.0.1a5.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-siibra-1.0.1a5.dist-info/METADATA,sha256=CO_Qej2SZ4h9saebuTGGPQLhPZOI4PQE4xSEHKVqKl4,9301
-siibra-1.0.1a5.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
-siibra-1.0.1a5.dist-info/top_level.txt,sha256=NF0OSGLL0li2qyC7MaU0iBB5Y9S09_euPpvisD0-8Hg,7
-siibra-1.0.1a5.dist-info/RECORD,,
+siibra-1.0.1a7.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+siibra-1.0.1a7.dist-info/METADATA,sha256=wvzztg9GqZBMq_u7M_7TYiQxRPL75WTHc_ESqgZ5lks,9301
+siibra-1.0.1a7.dist-info/WHEEL,sha256=zaaOINJESkSfm_4HQVc5ssNzHCPXhJm0kEUakpsEHaU,91
+siibra-1.0.1a7.dist-info/top_level.txt,sha256=NF0OSGLL0li2qyC7MaU0iBB5Y9S09_euPpvisD0-8Hg,7
+siibra-1.0.1a7.dist-info/RECORD,,

{siibra-1.0.1a5.dist-info → siibra-1.0.1a7.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.3.1)
+Generator: setuptools (80.8.0)
 Root-Is-Purelib: true
 Tag: py3-none-any