sierra-research 1.3.6__py3-none-any.whl → 1.5.0__py3-none-any.whl

sierra_research-1.5.0.dist-info/RECORD

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{sierra_research-1.3.6.dist-info → sierra_research-1.5.0.dist-info}/WHEEL

@@ -1,5 +1,4 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: hatchling 1.27.0
 Root-Is-Purelib: true
 Tag: py3-none-any
-

sierra/core/experiment/xml.py

@@ -1,454 +0,0 @@
-# Copyright 2022 John Harwell, All rights reserved.
-#
-#  SPDX-License-Identifier: MIT
-
-"""Helper classes for XML experiment definitions.
-
-Adding/removing tags, modifying attributes, configuration for how to write XML
-files.
-
-"""
-
-# Core packages
-import typing as tp
-import logging
-import pickle
-import xml.etree.ElementTree as ET
-import sys
-import pathlib
-
-# 3rd party packages
-
-# Project packages
-from sierra.core import types
-
-
-class AttrChange():
-    """
-    Specification for a change to an existing XML attribute.
-    """
-
-    def __init__(self,
-                 path: str,
-                 attr: str,
-                 value: tp.Union[str, int, float]) -> None:
-        self.path = path
-        self.attr = attr
-        self.value = str(value)
-
-    def __iter__(self):
-        yield from [self.path, self.attr, self.value]
-
-    def __repr__(self) -> str:
-        return self.path + '/' + self.attr + ': ' + str(self.value)
-
-
-class TagRm():
-    """
-    Specification for removal of an existing XML tag.
-    """
-
-    def __init__(self, path: str, tag: str):
-        """
-        Init the object.
-
-        Arguments:
-
-            path: The path to the **parent** of the tag you want to remove, in
-                  XPath syntax.
-
-            tag: The name of the tag to remove.
-        """
-        self.path = path
-        self.tag = tag
-
-    def __iter__(self):
-        yield from [self.path, self.tag]
-
-    def __repr__(self) -> str:
-        return self.path + '/' + self.tag
-
-
-class TagAdd():
-    """
-    Specification for adding a new XML tag.
-
-    The tag may be added idempotently, or duplicates can be allowed.
-    """
-    @staticmethod
-    def as_root(tag: str,
-                attr: types.StrDict) -> 'TagAdd':
-        return TagAdd('', tag, attr, False)
-
-    def __init__(self,
-                 path: str,
-                 tag: str,
-                 attr: types.StrDict,
-                 allow_dup: bool):
-        """
-        Init the object.
-
-        Arguments:
-
-            path: The path to the **parent** tag you want to add a new tag
-                  under, in XPath syntax. If None, then the tag will be added as
-                  the root XML tag.
-
-            tag: The name of the tag to add.
-
-            attr: A dictionary of (attribute, value) pairs to also create as
-                  children of the new tag when creating the new tag.
-        """
-
-        self.path = path
-        self.tag = tag
-        self.attr = attr
-        self.allow_dup = allow_dup
-
-    def __iter__(self):
-        yield from [self.path, self.tag, self.attr]
-
-    def __repr__(self) -> str:
-        return self.path + '/' + self.tag + ': ' + str(self.attr)
-
-
-class AttrChangeSet():
-    """
-    Data structure for :class:`AttrChange` objects.
-
-    The order in which attributes are changed doesn't matter from the standpoint
-    of correctness (i.e., different orders won't cause crashes).
-
-    """
-    @staticmethod
-    def unpickle(fpath: pathlib.Path) -> 'AttrChangeSet':
-        """Unpickle XML changes.
-
-        You don't know how many there are, so go until you get an exception.
-
-        """
-        exp_def = AttrChangeSet()
-
-        try:
-            with open(fpath, 'rb') as f:
-                while True:
-                    exp_def |= AttrChangeSet(*pickle.load(f))
-        except EOFError:
-            pass
-        return exp_def
-
-    def __init__(self, *args: AttrChange) -> None:
-        self.changes = set(args)
-        self.logger = logging.getLogger(__name__)
-
-    def __len__(self) -> int:
-        return len(self.changes)
-
-    def __iter__(self) -> tp.Iterator[AttrChange]:
-        return iter(self.changes)
-
-    def __ior__(self, other: 'AttrChangeSet') -> 'AttrChangeSet':
-        self.changes |= other.changes
-        return self
-
-    def __or__(self, other: 'AttrChangeSet') -> 'AttrChangeSet':
-        new = AttrChangeSet(*self.changes)
-        new |= other
-        return new
-
-    def __repr__(self) -> str:
-        return str(self.changes)
-
-    def add(self, chg: AttrChange) -> None:
-        self.changes.add(chg)
-
-    def pickle(self, fpath: pathlib.Path, delete: bool = False) -> None:
-        from sierra.core import utils
-
-        if delete and utils.path_exists(fpath):
-            fpath.unlink()
-
-        with open(fpath, 'ab') as f:
-            utils.pickle_dump(self.changes, f)
-
-
-class TagRmList():
-    """
-    Data structure for :class:`TagRm` objects.
-
-    The order in which tags are removed matters (i.e., if you remove dependent
-    tags in the wrong order you will get an exception), hence the list
-    representation.
-
-    """
-
-    def __init__(self, *args: TagRm) -> None:
-        self.rms = list(args)
-
-    def __len__(self) -> int:
-        return len(self.rms)
-
-    def __iter__(self) -> tp.Iterator[TagRm]:
-        return iter(self.rms)
-
-    def __repr__(self) -> str:
-        return str(self.rms)
-
-    def extend(self, other: 'TagRmList') -> None:
-        self.rms.extend(other.rms)
-
-    def append(self, other: TagRm) -> None:
-        self.rms.append(other)
-
-    def pickle(self, fpath: pathlib.Path, delete: bool = False) -> None:
-        from sierra.core import utils
-
-        if delete and utils.path_exists(fpath):
-            fpath.unlink()
-
-        with open(fpath, 'ab') as f:
-            utils.pickle_dump(self.rms, f)
-
-
-class TagAddList():
-    """
-    Data structure for :class:`TagAdd` objects.
-
-    The order in which tags are added matters (i.e., if you add dependent tags
-    in the wrong order you will get an exception), hence the list
-    representation.
-    """
-
-    @staticmethod
-    def unpickle(fpath: pathlib.Path) -> tp.Optional['TagAddList']:
-        """Unpickle XML modifications.
-
-        You don't know how many there are, so go until you get an exception.
-
-        """
-        exp_def = TagAddList()
-
-        try:
-            with open(fpath, 'rb') as f:
-                while True:
-                    exp_def.append(*pickle.load(f))
-        except EOFError:
-            pass
-        return exp_def
-
-    def __init__(self, *args: TagAdd) -> None:
-        self.adds = list(args)
-
-    def __len__(self) -> int:
-        return len(self.adds)
-
-    def __iter__(self) -> tp.Iterator[TagAdd]:
-        return iter(self.adds)
-
-    def __repr__(self) -> str:
-        return str(self.adds)
-
-    def extend(self, other: 'TagAddList') -> None:
-        self.adds.extend(other.adds)
-
-    def append(self, other: TagAdd) -> None:
-        self.adds.append(other)
-
-    def prepend(self, other: TagAdd) -> None:
-        self.adds.insert(0, other)
-
-    def pickle(self, fpath: pathlib.Path, delete: bool = False) -> None:
-        from sierra.core import utils
-
-        if delete and utils.path_exists(fpath):
-            fpath.unlink()
-
-        with open(fpath, 'ab') as f:
-            utils.pickle_dump(self.adds, f)
-
-
-class WriterConfig():
-    """Config for writing :class:`~sierra.core.experiment.definition.XMLExpDef`.
-
-    Different parts of the XML tree can be written to multiple XML files.
-
-    Attributes:
-
-        values: Dict with the following possible key, value pairs:
-
-                ``src_parent`` - The parent of the root of the XML tree
-                                 specifying a sub-tree to write out as a child
-                                 of ``dest_root``. This key is required.
-
-                ``src_tag`` - The name of the tag within ``src_parent`` to write
-                              out. This key is required.
-
-                ``dest_parent`` - The new name of ``src_root`` when writing out
-                                  the partial XML tree to a new file. This key
-                                  is optional.
-
-                ``create_tags`` - Additional tags to create under
-                                  ``dest_parent``. Must form a tree with a
-                                  single root.
-
-                ``opath_leaf`` - Additional bits added to whatever the opath
-                                 file stem that is set for the
-                                 :class:`~sierra.core.experiment.definition.XMLExpDef`
-                                 instance. This key is optional. Can be used to
-                                 add an extension.
-
-                ``child_grafts`` - Additional bits of the XML tree to add under
-                                   the new ``dest_root/src_tag``, specified as a
-                                   list of XPath strings. You can't just have
-                                   multiple src_roots because that makes
-                                   unambiguous renaming of ``src_root`` ->
-                                   ``dest_root`` impossible. This key is
-                                   optional.
-
-    """
-
-    def __init__(self, values: tp.List[dict]) -> None:
-        self.values = values
-
-    def add(self, value: dict) -> None:
-        self.values.append(value)
-
-
-class Writer():
-    """Write the XML experiment to the filesystem according to configuration.
-
-    More than one file may be written, as specified.
-    """
-
-    def __init__(self, tree: ET.ElementTree) -> None:
-        self.tree = tree
-        self.root = tree.getroot()
-        self.logger = logging.getLogger(__name__)
-
-    def __call__(self,
-                 write_config: WriterConfig,
-                 base_opath: pathlib.Path) -> None:
-        for config in write_config.values:
-            self._write_with_config(base_opath, config)
-
-    def _write_with_config(self,
-                           base_opath: pathlib.Path,
-                           config: dict) -> None:
-        tree, src_root, opath = self._write_prepare_tree(base_opath, config)
-
-        if tree is None:
-            self.logger.warning("Cannot write non-existent tree@%s to %s",
-                                src_root,
-                                opath)
-            return
-
-        self.logger.trace("Write tree@%s to %s",  # type: ignore
-                          src_root,
-                          opath)
-
-        # Renaming tree root is not required
-        if 'rename_to' in config and config['rename_to'] is not None:
-            tree.tag = config['rename_to']
-            self.logger.trace("Rename tree root -> %s",  # type: ignore
-                              config['rename_to'])
-
-        # Adding tags not required
-        if 'dest_parent' in config and config['dest_parent'] is not None:
-            # Create a new tree to add the specified tags in. After adding the
-            # tags, append the tree of newly created tags back into the parent.
-
-            to_write = ET.ElementTree()
-            if 'create_tags' in config and config['create_tags'] is not None:
-                self._write_add_tags(config, to_write)
-
-            parent = to_write.getroot().find(config['dest_parent'])
-            assert parent is not None,\
-                "Could not find parent '{0}' of tags for appending".format(
-                    config['dest_parent'])
-            parent.append(tree)
-        else:
-            to_write = ET.ElementTree(tree)
-            parent = to_write.getroot()
-
-        # Grafts are not required
-        if 'child_grafts' in config and config['child_grafts'] is not None:
-            self._write_add_grafts(config, to_write)
-
-        # Write out pretty XML to make it easier to read to see if things
-        # have been generated correctly.
-        if sys.version_info < (3, 9):
-            from xml.dom import minidom
-            with open(opath, "w", encoding='utf-8') as f:
-                raw = ET.tostring(to_write.getroot())
-                pretty = minidom.parseString(raw).toprettyxml(indent="  ")
-                f.write(pretty)
-        else:
-            ET.indent(to_write, space="\t", level=0)
-            to_write.write(opath, encoding='utf-8')
-
-    def _write_add_grafts(self,
-                          config: dict,
-                          to_write: ET.ElementTree) -> None:
-        dest_root = "{0}/{1}".format(config['dest_parent'],
-                                     config['src_tag'])
-        graft_parent = to_write.getroot().find(dest_root)
-        assert graft_parent is not None, \
-            "Bad parent {dest_root} for grafting"
-
-        for g in config['child_grafts']:
-            self.logger.trace("Graft tree@%s as child under %s",  # type: ignore
-                              g,
-                              dest_root)
-            elt = self.root.find(g)
-            graft_parent.append(elt)
-
-    def _write_add_tags(self,
-                        config: dict,
-                        to_write: ET.ElementTree) -> None:
-        for spec in config['create_tags']:
-            # Tree has no root set--set root to specified tag
-            if to_write.getroot() is None:
-                to_write._setroot(ET.Element(spec.tag, spec.attr))
-            else:
-                elt = to_write.find(spec.path)
-                assert elt is not None,\
-                    (f"Could not find parent '{spec.path}' of tag '{spec.tag}' "
-                     "to add")
-
-                ET.SubElement(elt, spec.tag, spec.attr)
-
-            self.logger.trace("Create tag@%s as child under %s",  # type: ignore
-                              spec.tag,
-                              spec.path)
-
-    def _write_prepare_tree(self,
-                            base_opath: pathlib.Path,
-                            config: dict) -> tp.Tuple[tp.Optional[ET.Element],
-                                                      str,
-                                                      pathlib.Path]:
-        if config['src_parent'] is None:
-            src_root = config['src_tag']
-        else:
-            src_root = "{0}/{1}".format(config['src_parent'],
-                                        config['src_tag'])
-
-        tree_out = self.tree.getroot().find(src_root)
-
-        # Customizing the output write path is not required
-        if 'opath_leaf' in config and config['opath_leaf'] is not None:
-            opath = base_opath.with_name(base_opath.name + config['opath_leaf'])
-        else:
-            opath = base_opath
-
-        return (tree_out, src_root, opath)
-
-
-__api__ = [
-    'AttrChange',
-    'AttrChangeSet',
-    'TagAdd',
-    'TagAddList',
-    'TagRm',
-    'TagRmList',
-    'WriterConfig'
-]