sierra-research 1.3.6__py3-none-any.whl → 1.3.11__py3-none-any.whl

sierra/core/generators/exp_creator.py

@@ -148,7 +148,7 @@ class ExpCreator:
                         run_exp_def: definition.XMLExpDef,
                         cmds_generator,
                         run_num: int) -> None:
-        run_output_dir = "{0}_{1}_output".format(self.template_stem, run_num)
+        run_output_dir = "{0}_run{1}_output".format(self.template_stem, run_num)
 
         # If the project defined per-run configuration, apply
         # it. Otherwise, just apply the configuration in the SIERRA core.

sierra/core/graphs/heatmap.py

@@ -211,7 +211,7 @@ class DualHeatmap:
         # Scaffold graph. We can use either dataframe for setting the graph
         # size; we assume they have the same dimensions.
         #
-        fig, axes = plt.subplots(ncols=2)
+        fig, axes = plt.subplots(nrows=1, ncols=2)
         Heatmap.set_graph_size(dfs[0], fig)
 
         y = np.arange(len(dfs[0].columns))

sierra/core/graphs/stacked_line_graph.py

@@ -222,7 +222,9 @@ class StackedLineGraph:
 
         return dfs
 
-    def _read_models(self) -> tp.Tuple[pd.DataFrame, tp.List[str]]:
+    # 2024/09/13 [JRH]: The union is for compatability with type checkers in
+    # python {3.8,3.11}.
+    def _read_models(self) -> tp.Tuple[pd.DataFrame, tp.Union[tp.List[str], tp.List[bytes]]]:
         if self.model_root is not None:
             model_fpath = self.model_root / \
                 (self.input_stem + config.kModelsExt['model'])

sierra/core/graphs/summary_line_graph.py

@@ -332,7 +332,9 @@ class SummaryLineGraph:
 
         return dfs
 
-    def _read_models(self) -> tp.Tuple[pd.DataFrame, tp.List[str]]:
+    # 2024/09/13 [JRH]: The union is for compatability with type checkers in
+    # python {3.8,3.11}.
+    def _read_models(self) -> tp.Tuple[pd.DataFrame, tp.Union[tp.List[str], tp.List[bytes]]]:
         if self.model_root is None:
             return (None, [])
 

sierra/core/pipeline/stage3/statistics_calculator.py

@@ -229,11 +229,11 @@ class ExpCSVGatherer:
 
         self.logger.info('Processing .csvs: %s...', exp_output_root.name)
 
-        pattern = "{}_{}_output".format(re.escape(self.gather_opts['template_input_leaf']),
-                                        r'\d+')
+        pattern = "{}_run{}_output".format(re.escape(self.gather_opts['template_input_leaf']),
+                                           r'\d+')
 
         runs = list(exp_output_root.iterdir())
-        assert(all(re.match(pattern, r.name) for r in runs)),\
+        assert (all(re.match(pattern, r.name) for r in runs)), \
             f"Extra files/not all dirs in '{exp_output_root}' are exp runs"
 
         # Maps (unique .csv stem, optional parent dir) to the averaged dataframe
@@ -299,7 +299,7 @@ class ExpCSVGatherer:
             reader = storage.DataFrameReader(self.gather_opts['storage_medium'])
             df = reader(item_path, index_col=False)
 
-            if df.dtypes[0] == 'object':
+            if df.dtypes.iloc[0] == 'object':
                 df[df.columns[0]] = df[df.columns[0]].apply(lambda x: float(x))
 
             if item not in gathered:
@@ -373,7 +373,7 @@ class ExpCSVGatherer:
                                   str(path1))
                 continue
 
-            assert (utils.path_exists(path1) and utils.path_exists(path2)),\
+            assert (utils.path_exists(path1) and utils.path_exists(path2)), \
                 f"Either {path1} or {path2} does not exist"
 
             # Verify both dataframes have same # columns, and that
@@ -385,15 +385,15 @@ class ExpCSVGatherer:
             assert (len(df1.columns) == len(df2.columns)), \
                 (f"Dataframes from {path1} and {path2} do not have "
                  "the same # columns")
-            assert(sorted(df1.columns) == sorted(df2.columns)),\
+            assert (sorted(df1.columns) == sorted(df2.columns)), \
                 f"Columns from {path1} and {path2} not identical"
 
             # Verify the length of all columns in both dataframes is the same
             for c1 in df1.columns:
-                assert(all(len(df1[c1]) == len(df1[c2]) for c2 in df1.columns)),\
+                assert (all(len(df1[c1]) == len(df1[c2]) for c2 in df1.columns)), \
                     f"Not all columns from {path1} have same length"
 
-                assert(all(len(df1[c1]) == len(df2[c2]) for c2 in df1.columns)),\
+                assert (all(len(df1[c1]) == len(df2[c2]) for c2 in df1.columns)), \
                     (f"Not all columns from {path1} and {path2} have "
                      "the same length")
 

sierra/core/pipeline/stage4/graph_collator.py

@@ -124,7 +124,7 @@ class UnivarGraphCollator:
 
             data_df = storage.DataFrameReader('storage.csv')(csv_ipath)
 
-            assert target['col'] in data_df.columns.values,\
+            assert target['col'] in data_df.columns.values, \
                 "{0} not in columns of {1}".format(target['col'],
                                                    target['src_stem'] + stat.df_ext)
 
@@ -221,7 +221,7 @@ class BivarGraphCollator:
 
             data_df = storage.DataFrameReader('storage.csv')(csv_ipath)
 
-            assert target['col'] in data_df.columns.values,\
+            assert target['col'] in data_df.columns.values, \
                 "{0} not in columns of {1}, which has {2}".format(target['col'],
                                                                   csv_ipath,
                                                                   data_df.columns)
@@ -238,10 +238,11 @@ class BivarGraphCollator:
             # in sequence, to generate a SEQUENCE of 2D dataframes.
             for row in data_df[target['col']].index:
                 if row in stat.df_seq.keys():
-                    stat.df_seq[row].loc[xlabel][ylabel] = data_df[target['col']][row]
+                    stat.df_seq[row].loc[xlabel][ylabel] = data_df.loc[row,
+                                                                       target['col']]
                 else:
                     df = pd.DataFrame(columns=stat.ylabels, index=stat.xlabels)
-                    df.loc[xlabel][ylabel] = data_df[target['col']][row]
+                    df.loc[xlabel][ylabel] = data_df.loc[row, target['col']]
                     stat.df_seq[row] = df
 
 

sierra/core/startup.py

@@ -74,8 +74,8 @@ def _linux_pkg_checks() -> None:
 
     dist = distro.id()
     os_info = distro.os_release_info()
-    if any(candidate in os_info['id_like'] for candidate in ['debian',
-                                                             'ubuntu']):
+    if any(candidate in os_info['id'] for candidate in ['debian',
+                                                        'ubuntu']):
         _apt_pkg_checks(dist)
     else:
         logging.warning(("Unknown Linux distro '%s' detected: skipping package "

sierra/version.py

@@ -9,4 +9,4 @@
 
 # Project packages
 
-__version__ = "1.3.6"
+__version__ = "1.3.11"

{sierra_research-1.3.6.data → sierra_research-1.3.11.data}/data/share/man/man1/sierra-cli.1

@@ -27,7 +27,7 @@ level margin: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .\" new: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .in \\n[rst2man-indent\\n[rst2man-indent-level]]u
 ..
-.TH "SIERRA-CLI" "1" "Apr 01, 2024" "1.3.6" "SIERRA"
+.TH "SIERRA-CLI" "1" "Sep 23, 2024" "1.3.11" "SIERRA"
 .SH NAME
 sierra-cli \- The SIERRA Command Line Interface (CLI).
 .sp

{sierra_research-1.3.6.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-examples.7

@@ -27,13 +27,13 @@ level margin: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .\" new: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .in \\n[rst2man-indent\\n[rst2man-indent-level]]u
 ..
-.TH "SIERRA-EXAMPLES" "7" "Apr 01, 2024" "1.3.6" "SIERRA"
+.TH "SIERRA-EXAMPLES" "7" "Sep 23, 2024" "1.3.11" "SIERRA"
 .SH NAME
 sierra-examples \- Examples of SIERRA usage. These examples all assume that you have successfully set up SIERRA with a project of your choice.
 .sp
 This page contains reference examples of SIERRA usage to help you craft your own
 SIERRA invocation.  These examples use the SIERRA project plugins from the
-SIERRA sample project repo: \fI\%https://github.com/jharwell/sierra\-sample\-project\fP\&. See
+SIERRA sample project repo: \fI\%https://github.com/jharwell/sierra\-sample\-project.git\fP\&. See
 \fI\%Trying Out SIERRA\fP or \fI\%Getting Started With SIERRA\fP for setting up the
 sample project repository.
 .sp
@@ -226,16 +226,23 @@ TWO variables/things you want to vary jointly):
 .sp
 .nf
 .ft C
-::
+sierra\-cli \e
+\-\-sierra\-root=$HOME/exp \e
+\-\-template\-input\-file=exp/your\-experiment.argos \e
+\-\-platform=platform.argos\e
+\-\-project=argos_project \e
+\-\-controller=foraging.footbot_foraging \e
+\-\-scenario=LowBlockCount.10x10x2 \e
+\-\-exec\-env=hpc.local \e
+\-\-n\-runs=3 \e
+\-\-platform\-vc \e
+\-\-exp\-graphs=none \e
+\-\-physics\-n\-engines=1 \e
+\-\-batch\-criteria population_size.Log8 max_speed.1.9.C5
 .ft P
 .fi
 .UNINDENT
 .UNINDENT
-.INDENT 0.0
-.INDENT 3.5
-sierra\-cli \-\-sierra\-root=$HOME/exp \-\-template\-input\-file=exp/your\-experiment.argos \-\-platform=platform.argos\-\-project=argos_project \-\-controller=foraging.footbot_foraging \-\-scenario=LowBlockCount.10x10x2 \-\-exec\-env=hpc.local \-\-n\-runs=3 \-\-platform\-vc \-\-exp\-graphs=none \-\-physics\-n\-engines=1 \-\-batch\-criteria population_size.Log8 max_speed.1.9.C5
-.UNINDENT
-.UNINDENT
 .sp
 The \fBmax_speed.1.9.C5\fP is a batch criteria defined in the sample project, and
 corresponds to setting the maximum robot speed from 1...9 to make 5 experiments;
@@ -423,16 +430,21 @@ with TWO variables/things you want to vary jointly):
 .sp
 .nf
 .ft C
-::
+sierra\-cli \e
+\-\-sierra\-root=$HOME/exp \e
+\-\-template\-input\-file=exp/your\-experiment.argos \e
+\-\-platform=platform.ros1gazebo\e
+\-\-project=ros1gazebo_project \e
+\-\-controller=turtlebot3_sim.wander \e
+\-\-scenario=HouseWorld.10x10x2 \e
+\-\-exec\-env=hpc.local \e
+\-\-n\-runs=3 \e
+\-\-exp\-graphs=none \e
+\-\-batch\-criteria population_size.Log8 max_speed.1.9.C5
 .ft P
 .fi
 .UNINDENT
 .UNINDENT
-.INDENT 0.0
-.INDENT 3.5
-sierra\-cli \-\-sierra\-root=$HOME/exp \-\-template\-input\-file=exp/your\-experiment.argos \-\-platform=platform.ros1gazebo\-\-project=ros1gazebo_project \-\-controller=turtlebot3_sim.wander \-\-scenario=HouseWorld.10x10x2 \-\-exec\-env=hpc.local \-\-n\-runs=3 \-\-exp\-graphs=none \-\-batch\-criteria population_size.Log8 max_speed.1.9.C5
-.UNINDENT
-.UNINDENT
 .sp
 The \fBmax_speed.1.9.C5\fP is a batch criteria defined in the sample project, and
 corresponds to setting the maximum robot speed from 1...9 to make 5 experiments;
@@ -455,17 +467,25 @@ plugin:
 .sp
 .nf
 .ft C
-::
+sierra\-cli \e
+\-\-platform=platform.ros1robot \e
+\-\-project=ros1robot_project \e
+\-\-n\-runs=4 \e
+\-\-template\-input\-file=exp/your\-experiment.launch \e
+\-\-scenario=OutdoorWorld.16x16x2 \e
+\-\-sierra\-root=$HOME/exp/test \e
+\-\-batch\-criteria population_size.Linear6.C6 \e
+\-\-controller=turtlebot3.wander \e
+\-\-robot turtlebot3 \e
+\-\-exp\-setup=exp_setup.T100 \e
+\-\-exec\-env=robot.turtlebot3 \e
+\-\-nodefile=turtlebots.txt
+\-\-exec\-inter\-run\-pause=60 \e
+\-\-no\-master\-node \e
 .ft P
 .fi
 .UNINDENT
 .UNINDENT
-.INDENT 0.0
-.INDENT 3.5
-sierra\-cli \-\-platform=platform.ros1robot \-\-project=ros1robot_project \-\-n\-runs=4 \-\-template\-input\-file=exp/your\-experiment.launch \-\-scenario=OutdoorWorld.16x16x2 \-\-sierra\-root=$HOME/exp/test \-\-batch\-criteria population_size.Linear6.C6 \-\-controller=turtlebot3.wander \-\-robot turtlebot3 \-\-exp\-setup=exp_setup.T100 \-\-exec\-env=robot.turtlebot3 \-\-nodefile=turtlebots.txt
-\-\-exec\-inter\-run\-pause=60 \-\-no\-master\-node 
-.UNINDENT
-.UNINDENT
 .sp
 This will run a batch of 4 experiments using a correlated random walk controller
 (CRW) on the turtlebot3. Population size will be varied from 1,2,3,4,5,6. Within

{sierra_research-1.3.6.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-exec-envs.7

@@ -27,7 +27,7 @@ level margin: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .\" new: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .in \\n[rst2man-indent\\n[rst2man-indent-level]]u
 ..
-.TH "SIERRA-EXEC-ENVS" "7" "Apr 01, 2024" "1.3.6" "SIERRA"
+.TH "SIERRA-EXEC-ENVS" "7" "Sep 23, 2024" "1.3.11" "SIERRA"
 .SH NAME
 sierra-exec-envs \- The execution environments SIERRA supports.
 .SH HPC EXECUTION ENVIRONMENT PLUGINS

{sierra_research-1.3.6.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-glossary.7

@@ -27,7 +27,7 @@ level margin: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .\" new: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .in \\n[rst2man-indent\\n[rst2man-indent-level]]u
 ..
-.TH "SIERRA-GLOSSARY" "7" "Apr 01, 2024" "1.3.6" "SIERRA"
+.TH "SIERRA-GLOSSARY" "7" "Sep 23, 2024" "1.3.11" "SIERRA"
 .SH NAME
 sierra-glossary \- Glossary of SIERRA terminology.
 .SH GLOSSARY

{sierra_research-1.3.6.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-platforms.7

@@ -27,7 +27,7 @@ level margin: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .\" new: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .in \\n[rst2man-indent\\n[rst2man-indent-level]]u
 ..
-.TH "SIERRA-PLATFORMS" "7" "Apr 01, 2024" "1.3.6" "SIERRA"
+.TH "SIERRA-PLATFORMS" "7" "Sep 23, 2024" "1.3.11" "SIERRA"
 .SH NAME
 sierra-platforms \- The platforms SIERRA supports, and platform-specific Batch Criteria.
 .SH ARGOS PLATFORM

{sierra_research-1.3.6.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-usage.7

@@ -27,7 +27,7 @@ level margin: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .\" new: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .in \\n[rst2man-indent\\n[rst2man-indent-level]]u
 ..
-.TH "SIERRA-USAGE" "7" "Apr 01, 2024" "1.3.6" "SIERRA"
+.TH "SIERRA-USAGE" "7" "Sep 23, 2024" "1.3.11" "SIERRA"
 .SH NAME
 sierra-usage \- How to use SIERRA. This covers all non-command line interface aspects.
 .sp
@@ -312,20 +312,20 @@ an input file for each \fI\%Experimental Run\fP in the experiment,
 as well as a \fBcommands.txt\fP used by GNU parallel to run them all
 in parallel. The leaf of the \fB\-\-template\-input\-file\fP, sans
 extension, has the experimental run # appended to it
-(e.g. \fBmy\-template_0.argos\fP is the input file for simulation 0).
+(e.g. \fBmy\-template_run0.argos\fP is the input file for simulation 0).
 .INDENT 2.0
 .INDENT 3.5
 .INDENT 0.0
 .IP \(bu 2
 \fBcommands.txt\fP
 .IP \(bu 2
-\fBmy\-template_0.argos\fP
+\fBmy\-template_run0.argos\fP
 .IP \(bu 2
-\fBmy\-template_1.argos\fP
+\fBmy\-template_run1.argos\fP
 .IP \(bu 2
-\fBmy\-template_2.argos\fP
+\fBmy\-template_run2.argos\fP
 .IP \(bu 2
-\fBmy\-template_3.argos\fP
+\fBmy\-template_run3.argos\fP
 .UNINDENT
 .UNINDENT
 .UNINDENT
@@ -333,13 +333,13 @@ extension, has the experimental run # appended to it
 \fBexp1\fP
 .INDENT 2.0
 .IP \(bu 2
-\fBmy\-template_0.argos\fP
+\fBmy\-template_run0.argos\fP
 .IP \(bu 2
-\fBmy\-template_1.argos\fP
+\fBmy\-template_run1.argos\fP
 .IP \(bu 2
-\fBmy\-template_2.argos\fP
+\fBmy\-template_run2.argos\fP
 .IP \(bu 2
-\fBmy\-template_3.argos\fP
+\fBmy\-template_run3.argos\fP
 .UNINDENT
 .IP \(bu 2
 \fBexp2\fP
@@ -361,25 +361,25 @@ each experimental run\(aqs output, including metrics, grabbed frames,
 etc., as configured in the XML input file.
 .INDENT 2.0
 .IP \(bu 2
-\fBmy\-template_0_output\fP
+\fBmy\-template_run0_output\fP
 .IP \(bu 2
-\fBmy\-template_1_output\fP
+\fBmy\-template_run1_output\fP
 .IP \(bu 2
-\fBmy\-template_2_output\fP
+\fBmy\-template_run2_output\fP
 .IP \(bu 2
-\fBmy\-template_3_output\fP
+\fBmy\-template_run3_output\fP
 .UNINDENT
 .IP \(bu 2
 \fBexp1\fP
 .INDENT 2.0
 .IP \(bu 2
-\fBmy\-template_0_output\fP
+\fBmy\-template_run0_output\fP
 .IP \(bu 2
-\fBmy\-template_1_output\fP
+\fBmy\-template_run1_output\fP
 .IP \(bu 2
-\fBmy\-template_2_output\fP
+\fBmy\-template_run2_output\fP
 .IP \(bu 2
-\fBmy\-template_3_output\fP
+\fBmy\-template_run3_output\fP
 .UNINDENT
 .IP \(bu 2
 \fBexp2\fP
@@ -463,10 +463,10 @@ First, the experiment tree for \fIscenario comparison\fP:
 .sp
 .nf
 .ft C
-\-\-pipeline 5\e
-\-\-scenario\-comparison\e
-\-\-batch\-criteria population_size.Log8\e
-\-\-scenarios\-list=RN.16x16x2,PL.16x16x2\e
+\-\-pipeline 5 \e
+\-\-scenario\-comparison \e
+\-\-batch\-criteria population_size.Log8 \e
+\-\-scenarios\-list=RN.16x16x2,PL.16x16x2 \e
 \-\-sierra\-root=$HOME/exp\(dq
 .ft P
 .fi
@@ -497,10 +497,10 @@ Second, the experiment tree for \fIcontroller comparison\fP
 .sp
 .nf
 .ft C
-\-\-pipeline 5\e
-\-\-controller\-comparison\e
-\-\-batch\-criteria population_size.Log8\e
-\-\-controllers\-list d0.CRW,d0.DPO\e
+\-\-pipeline 5 \e
+\-\-controller\-comparison \e
+\-\-batch\-criteria population_size.Log8 \e
+\-\-controllers\-list d0.CRW,d0.DPO \e
 \-\-sierra\-root=$HOME/exp\(dq
 .ft P
 .fi
@@ -545,6 +545,10 @@ experiments (\fI\%ROS1+Robot\fP platform).
 .IP \(bu 2
 \fBparallel\-rsync\fP \- Used during stage 1 when generating experiments
 experiments (\fI\%ROS1+Robot\fP platform).
+.IP \(bu 2
+\fBkillall\fP \- Used during stage 2 when running :term:
+\fI\%ARGoS\fP, \fI\%ROS1+Gazebo\fP experiments to cleanup after each
+experimental run.
 .UNINDENT
 .SH ENVIRONMENT VARIABLES
 .INDENT 0.0

{sierra_research-1.3.6.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra.7

@@ -27,7 +27,7 @@ level margin: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .\" new: \\n[rst2man-indent\\n[rst2man-indent-level]]
 .in \\n[rst2man-indent\\n[rst2man-indent-level]]u
 ..
-.TH "SIERRA" "7" "Apr 01, 2024" "1.3.6" "SIERRA"
+.TH "SIERRA" "7" "Sep 23, 2024" "1.3.11" "SIERRA"
 .SH NAME
 sierra \- reSearch pIpEline for Reproducability, Reusability, and Automation.
 .SH SYNOPSIS
@@ -65,7 +65,7 @@ execution before proceeding to the next step. SIERRA should rarely crash with a
 cryptic interpreter error message/exception, but if it does, please report it so
 I can fix it and/or create a better error message.
 .sp
-Errors should be reported to \fI\%https://github.com/jharwell/sierra\fP\&.
+Errors should be reported to \fI\%https://github.com/jharwell/sierra.git\fP\&.
 .SH RETURN VALUE
 .sp
 SIERRA will always return 0, unless it crashes with an exception or a failed

{sierra_research-1.3.6.dist-info → sierra_research-1.3.11.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: sierra-research
-Version: 1.3.6
+Version: 1.3.11
 Summary: Automation framework for the scientific method in AI research
 Home-page: https://github.com/jharwell/sierra
 Author: John Harwell
@@ -11,6 +11,9 @@ Platform: linux
 Platform: osx
 Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Environment :: Console
 Classifier: Operating System :: MacOS :: MacOS X
@@ -52,8 +55,8 @@ Requires-Dist: mypy-runner ; extra == 'devel'
 Requires-Dist: build ; extra == 'devel'
 Requires-Dist: twine ; extra == 'devel'
 Requires-Dist: setuptools ; extra == 'devel'
-Requires-Dist: sphinx ==5.0.2 ; extra == 'devel'
-Requires-Dist: docutils ==0.18.1 ; extra == 'devel'
+Requires-Dist: sphinx ==6.0.0 ; extra == 'devel'
+Requires-Dist: docutils ==0.19 ; extra == 'devel'
 Requires-Dist: sphinx-rtd-theme ; extra == 'devel'
 Requires-Dist: sphinx-argparse ; extra == 'devel'
 Requires-Dist: sphinx-tabs ; extra == 'devel'
@@ -73,17 +76,13 @@ SIERRA (reSearch pIpEline for Reproducibility, Reusability, and Automation)
                   :target: https://pypi.python.org/pypi/sierra-research/
 
 .. |supported-pythons| image:: https://img.shields.io/pypi/pyversions/sierra-research.svg
-                       :target: https://pypi.python.org/pypi/sierra-research/
 
-.. |linux-supported| image:: https://img.shields.io/badge/os-Linux-crimson
-.. |osx-supported| image:: https://img.shields.io/badge/os-OSX-crimson
+.. |os-supported| image:: https://img.shields.io/badge/os-linux%20%7C%20macOS-blue
 
-.. |ci-integration-master| image:: https://github.com/jharwell/sierra/actions/workflows/integration-all.yml/badge.svg?branch=master
-.. |ci-analysis-master| image:: https://github.com/jharwell/sierra/actions/workflows/static-analysis.yml/badge.svg?branch=master
+.. |ci-analysis-master| image:: https://github.com/jharwell/sierra/actions/workflows/analysis-top.yml/badge.svg?branch=master
 .. |ci-coverage-master| image:: https://coveralls.io/repos/github/jharwell/sierra/badge.svg?branch=master
 
-.. |ci-integration-devel| image:: https://github.com/jharwell/sierra/actions/workflows/integration-all.yml/badge.svg?branch=devel
-.. |ci-analysis-devel| image:: https://github.com/jharwell/sierra/actions/workflows/static-analysis.yml/badge.svg?branch=devel
+.. |ci-analysis-devel| image:: https://github.com/jharwell/sierra/actions/workflows/analysis-top.yml/badge.svg?branch=devel
 .. |ci-coverage-devel| image:: https://coveralls.io/repos/github/jharwell/sierra/badge.svg?branch=devel
 
 .. |license| image:: https://img.shields.io/badge/License-MIT-blue.svg
@@ -95,24 +94,17 @@ SIERRA (reSearch pIpEline for Reproducibility, Reusability, and Automation)
           :target: https://sierra.readthedocs.io/en/master/
 
 .. |maintenance| image:: https://img.shields.io/badge/Maintained%3F-yes-green.svg
-                  :target: https://gitHub.com/jharwell/sierra/graphs/commit-activity
 
 
-:Usage:
-   |pepy-downloads| |pypi-version| |supported-pythons| |linux-supported|
-   |osx-supported|
-
-:Release:
-
-   |ci-analysis-master| |ci-integration-master| |ci-coverage-master|
-
-:Development:
-
-   |ci-analysis-devel| |ci-integration-devel| |ci-coverage-devel|
-
-:Misc:
-
-   |license| |doi| |docs| |maintenance|
++---------------+--------------------------------------------------------------------+
+| Usage         | |pepy-downloads| |pypi-version| |supported-pythons| |os-supported| |
++---------------+--------------------------------------------------------------------+
+| Release       | |ci-analysis-master| |ci-coverage-master|                          |
++---------------+--------------------------------------------------------------------+
+| Development   | |ci-analysis-devel| |ci-coverage-devel|                            |
++---------------+--------------------------------------------------------------------+
+| Miscellaneous |    |license| |doi| |docs| |maintenance|                            |
++---------------+--------------------------------------------------------------------+
 
 
 TL;DR

{sierra_research-1.3.6.dist-info → sierra_research-1.3.11.dist-info}/RECORD

@@ -1,6 +1,6 @@
 sierra/__init__.py,sha256=LrL9-6GqsT0Lvo6jb54x4m-DL1NywTXG8JKSrYis7Xo,186
 sierra/main.py,sha256=K46LsG16cSqTMfNiT3vSSF3SLh5BjAUPVqPjZ6A2Oxs,6618
-sierra/version.py,sha256=1DltYoYdHXaHmjq1Ls8zc6SRe9FsSFUWsC4fE8J1yI8,243
+sierra/version.py,sha256=D-OvGRKNdSWecG-yBJLuOZqHhcOpt7Lbhw_2JsCrTKU,244
 sierra/core/__init__.py,sha256=IwACyV8LoLuIx3TBzC6WdcRTq9D-0GO7nguLxY64QbI,188
 sierra/core/cmdline.py,sha256=j9eAStCFolUyzvUSzqeRE1BNgtxDTgaYqDiaTTYFUBQ,58191
 sierra/core/config.py,sha256=zezJgparLsD4HtgfzPvlxmwBX-6X3Ntdq2kkMlxvFQs,4562
@@ -9,7 +9,7 @@ sierra/core/platform.py,sha256=jOlm4PVPNp9EPjtckaYR66t5p6A4fQwBxmjZoFCHz-o,17359
 sierra/core/plugin.py,sha256=Bc4n1_Q5VvorAsbwt76K6cZmSrU-f0m2tNyQSWXYsOE,3500
 sierra/core/plugin_manager.py,sha256=PB5AmPpjcl9ct-F8_x_tVwRioOLjHD0Vp66rQtkLrVc,12535
 sierra/core/root_dirpath_generator.py,sha256=pEJd_9a_eWSWLHPDv4fd-HWnbB0MPZG9c_ukXe3xl3k,8173
-sierra/core/startup.py,sha256=raE4kgNarzcDIDlgw2cHFenH3_qJJehEq4kBCE4Rnpk,5422
+sierra/core/startup.py,sha256=Olxd97W4gOykzkpMnliUr4gzWGvVGsQQGqKo51br9-s,5412
 sierra/core/stat_kernels.py,sha256=wBTWEXw2XvdSfxghNlhUbKkn1XjgTP7_d0OBM6lUvWE,6030
 sierra/core/storage.py,sha256=VJ5IqNM_grOMYH5vq6bI5EO4muySERaj4TI-Ngzny6w,1300
 sierra/core/types.py,sha256=R5gW2u9nBPHJJ7HdliFzq999SwvWgYzPGX0tlyWAiWQ,2049
@@ -22,15 +22,15 @@ sierra/core/experiment/spec.py,sha256=QpCOHCi1OGWuCRVS-YnDPwflimRStcqCzAVMWf7IcE
 sierra/core/experiment/xml.py,sha256=jgAG_5J4midlf-uOQIkqfK9kFnXTNc0OFhf-3yEMA3c,14619
 sierra/core/generators/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 sierra/core/generators/controller_generator_parser.py,sha256=7Jr0K4p0O0PQRW0JoF8UDCB9IAEIWRGZoZ1J0DLpoXw,873
-sierra/core/generators/exp_creator.py,sha256=QdfOvsGrtx7SEjd1DzT4XOf2QK9GqZQ3nGlAFV7M_lQ,15596
+sierra/core/generators/exp_creator.py,sha256=IjojKSGP-rWsApcK5qy13uQtLKDMjiytUotNADTlLq0,15599
 sierra/core/generators/exp_generators.py,sha256=VSSmjmP8VQXzBrXnzASEzN_fJS6TPr_jPnlAlxvwsF4,5574
 sierra/core/generators/generator_factory.py,sha256=Os_kkW76XEoC5OyoOeGNQFHbRaNP9xJ8JxtCC48TfPE,8919
 sierra/core/graphs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-sierra/core/graphs/heatmap.py,sha256=ehpdpnsFJiJgfdNQA2FyqwTYrn7f4cu6B3fwJ1jkppc,12218
+sierra/core/graphs/heatmap.py,sha256=SgiKIq948o_E_FeOZaslGYr354-5keCRdvlGHjTaXTo,12227
 sierra/core/graphs/scatterplot2D.py,sha256=boUvsHbN5dJYyKsrm5eRSvW2T6_xi3fmYFVu-mjhmnY,3685
-sierra/core/graphs/stacked_line_graph.py,sha256=pXyCDCP3YOv-A3skl4dCPWNKF8SzQ76Wup80xdClw6I,9125
+sierra/core/graphs/stacked_line_graph.py,sha256=9zjKbqfstuz9px4OfxWe6dV2pouM6qKcl1OBorxxOZQ,9255
 sierra/core/graphs/stacked_surface_graph.py,sha256=XH35cVtoqaF2hRv_TrjlF0F4GsP1DO_Fw35MdEGCai8,8125
-sierra/core/graphs/summary_line_graph.py,sha256=G7w7_kTXevB5aw4o6BfRE3tTNBYCbfCrlZHfxh7eCa4,13573
+sierra/core/graphs/summary_line_graph.py,sha256=St8oiLFf6VqQoq7daYjXjqanKdXzEQZknk5rmBD8ojE,13703
 sierra/core/hpc/__init__.py,sha256=IG0EW-YZRtbyq01-G62wdgzI5hZ9OBqEbC1-QQhJFsI,167
 sierra/core/hpc/cmdline.py,sha256=wtnI0C__i6eKLrj8O5j5jNreSRBFp75xlkd35NeaciU,5186
 sierra/core/models/__init__.py,sha256=uAPXNomKYGVVsvnhTSpSrltW0S3TqRj6dOvVvd8SXcc,168
@@ -47,9 +47,9 @@ sierra/core/pipeline/stage3/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMp
 sierra/core/pipeline/stage3/imagizer.py,sha256=BspVVNc7VhCNkt_jGXpFFaSlLr7bvSQiaN1rHXhxoWY,5094
 sierra/core/pipeline/stage3/pipeline_stage3.py,sha256=lpBugfd-uASYqE1PgOiDIpVI4GcpCPnO6D_AkBIKZW8,4572
 sierra/core/pipeline/stage3/run_collator.py,sha256=olq8wUiBWv4uK0mX2mo2siClt97vV2pxkfeDa_fTX1M,12585
-sierra/core/pipeline/stage3/statistics_calculator.py,sha256=uFuGW18LnHUKn9tfm8PveB8PGETbWRwvkzFz0EXCmlg,18186
+sierra/core/pipeline/stage3/statistics_calculator.py,sha256=u1hF4gjLRUky4CHshqI_w4EXSYz6HYvXJ2h0gb0XNhc,18206
 sierra/core/pipeline/stage4/__init__.py,sha256=ttj4q54PLfuUQfrwH6Pnl7z289sDpQlpU_3jSvJVw5g,80
-sierra/core/pipeline/stage4/graph_collator.py,sha256=yVeu9Tr0pdq1iGnPO5IUVun3nI1r6-Hnd1rrdMIISPo,12042
+sierra/core/pipeline/stage4/graph_collator.py,sha256=xoJi_Rnls7IadTv8grRJA9byq_b1RJnjA0AJw9ve3tU,12124
 sierra/core/pipeline/stage4/inter_exp_graph_generator.py,sha256=GWFqivwyteL5qVIR8Ta5oJv-zecHb_RqPAU6EYRSC1k,9591
 sierra/core/pipeline/stage4/intra_exp_graph_generator.py,sha256=zdpR7l6jUNKJdOKkCrkbLMrYS3MEBOcwPMOOfB8lMyY,13814
 sierra/core/pipeline/stage4/model_runner.py,sha256=RkDmjzeZvqxEiZEwuIfw3wiwvKUXH8libBAX_w9K_5w,6745
@@ -118,16 +118,16 @@ sierra/plugins/robot/turtlebot3/plugin.py,sha256=r7TSnboGUI5cCqT_ty1X9KVJ770pMcP
 sierra/plugins/storage/__init__.py,sha256=6b7RQQobZUX1hRmfmq_bZ3KovuTKeBYNLWwEG_axTxQ,145
 sierra/plugins/storage/csv/__init__.py,sha256=6b7RQQobZUX1hRmfmq_bZ3KovuTKeBYNLWwEG_axTxQ,145
 sierra/plugins/storage/csv/plugin.py,sha256=EnFIAmeEpAcVUlbuGG3I3sdb9AVO5zg4k2pa2C1dLFM,938
-sierra_research-1.3.6.data/data/share/man/man1/sierra-cli.1,sha256=xs9CghWYI3w29zeeCk5aBcth0omqLyB50UqULPb7vLY,54484
-sierra_research-1.3.6.data/data/share/man/man7/sierra-examples.7,sha256=4bqHRleirUTfjregCbaic_JzASrndk12MRlIuN3htaQ,17969
-sierra_research-1.3.6.data/data/share/man/man7/sierra-exec-envs.7,sha256=9NzoKY9hptKREts3pZgq0fCJqrLW6CK1QcowRN_ey-c,7789
-sierra_research-1.3.6.data/data/share/man/man7/sierra-glossary.7,sha256=hsiqUZADQSQS9Dig4n_pP_wC8ibH3_1AqO0c8F8aGFM,10868
-sierra_research-1.3.6.data/data/share/man/man7/sierra-platforms.7,sha256=yFoLDBl99G_aRD71PYLew5uwglh6FjXSfw-wQ4sv1Ww,13871
-sierra_research-1.3.6.data/data/share/man/man7/sierra-usage.7,sha256=cUkiTlpDxuLjIcM5QJfR39iX08AGdom8MmJmcqPEOTk,24725
-sierra_research-1.3.6.data/data/share/man/man7/sierra.7,sha256=sci8lek0-vEbDRce8ZagtMY9pIbU1wUdudD0xiYvqQM,2478
-sierra_research-1.3.6.dist-info/LICENSE,sha256=syQ7e-OEgTREA-x8XbHp8x4CIj7LR1-_cwicIfKGWcg,1052
-sierra_research-1.3.6.dist-info/METADATA,sha256=ll2CYzxeFw68RKYke_H_JjnV_9WSnRzmbUATn6M_c9A,16914
-sierra_research-1.3.6.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-sierra_research-1.3.6.dist-info/entry_points.txt,sha256=3FhShoQcDSf17edEyA6qcO1YwGrZ5kuayu2iVG5npXY,48
-sierra_research-1.3.6.dist-info/top_level.txt,sha256=cDP7dDWAyFL7fK11L89hCUHy9-G267wuHeVLVR4pTX4,7
-sierra_research-1.3.6.dist-info/RECORD,,
+sierra_research-1.3.11.data/data/share/man/man1/sierra-cli.1,sha256=lXO2NAuea56EPusy20__h6z0oxgeJ6OskBokMeosT8g,54485
+sierra_research-1.3.11.data/data/share/man/man7/sierra-examples.7,sha256=ApCxZCHA9q7OhewvDxocq7HCKCZL4Om07H6eSIi0ams,17940
+sierra_research-1.3.11.data/data/share/man/man7/sierra-exec-envs.7,sha256=1voVwDNO2EqgXDiWujuVFXJbpt_8DBSR8JUAp1vV-ao,7790
+sierra_research-1.3.11.data/data/share/man/man7/sierra-glossary.7,sha256=VDoYCt0pht3ILs0m54d6hAGY9OctaQq1F32FEQuXJIc,10869
+sierra_research-1.3.11.data/data/share/man/man7/sierra-platforms.7,sha256=wzwsw6Lh4PvenXVeetCrZlcKj0GQobAVlbmTK_xwul0,13872
+sierra_research-1.3.11.data/data/share/man/man7/sierra-usage.7,sha256=oEAttFpwBJiY2a5iOrihfLQRAqDRkQPj1geQCMHtVco,24940
+sierra_research-1.3.11.data/data/share/man/man7/sierra.7,sha256=Rgmh_qfXkS7lNNwPImzVReyYvlzZA3q9J00tx12b36U,2483
+sierra_research-1.3.11.dist-info/LICENSE,sha256=syQ7e-OEgTREA-x8XbHp8x4CIj7LR1-_cwicIfKGWcg,1052
+sierra_research-1.3.11.dist-info/METADATA,sha256=VgRwQM0ntm1p2uQjoH02yzMn-rW9mcQ794nyMUY1bT4,17043
+sierra_research-1.3.11.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
+sierra_research-1.3.11.dist-info/entry_points.txt,sha256=3FhShoQcDSf17edEyA6qcO1YwGrZ5kuayu2iVG5npXY,48
+sierra_research-1.3.11.dist-info/top_level.txt,sha256=cDP7dDWAyFL7fK11L89hCUHy9-G267wuHeVLVR4pTX4,7
+sierra_research-1.3.11.dist-info/RECORD,,

{sierra_research-1.3.6.dist-info → sierra_research-1.3.11.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: setuptools (75.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any