sierra-research 1.3.5__py3-none-any.whl → 1.3.11__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (23) hide show
  1. sierra/core/config.py +1 -1
  2. sierra/core/generators/exp_creator.py +1 -1
  3. sierra/core/graphs/heatmap.py +1 -1
  4. sierra/core/graphs/stacked_line_graph.py +3 -1
  5. sierra/core/graphs/summary_line_graph.py +3 -1
  6. sierra/core/pipeline/stage3/statistics_calculator.py +8 -8
  7. sierra/core/pipeline/stage4/graph_collator.py +5 -4
  8. sierra/core/startup.py +2 -2
  9. sierra/core/utils.py +1 -1
  10. sierra/version.py +1 -1
  11. {sierra_research-1.3.5.data → sierra_research-1.3.11.data}/data/share/man/man1/sierra-cli.1 +134 -134
  12. {sierra_research-1.3.5.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-examples.7 +54 -34
  13. {sierra_research-1.3.5.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-exec-envs.7 +12 -12
  14. {sierra_research-1.3.5.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-glossary.7 +12 -12
  15. {sierra_research-1.3.5.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-platforms.7 +31 -31
  16. {sierra_research-1.3.5.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra-usage.7 +85 -81
  17. {sierra_research-1.3.5.data → sierra_research-1.3.11.data}/data/share/man/man7/sierra.7 +5 -5
  18. {sierra_research-1.3.5.dist-info → sierra_research-1.3.11.dist-info}/METADATA +19 -27
  19. {sierra_research-1.3.5.dist-info → sierra_research-1.3.11.dist-info}/RECORD +23 -23
  20. {sierra_research-1.3.5.dist-info → sierra_research-1.3.11.dist-info}/WHEEL +1 -1
  21. {sierra_research-1.3.5.dist-info → sierra_research-1.3.11.dist-info}/LICENSE +0 -0
  22. {sierra_research-1.3.5.dist-info → sierra_research-1.3.11.dist-info}/entry_points.txt +0 -0
  23. {sierra_research-1.3.5.dist-info → sierra_research-1.3.11.dist-info}/top_level.txt +0 -0
@@ -1,8 +1,5 @@
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  .\" Man page generated from reStructuredText.
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  .
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- .TH "SIERRA-USAGE" "7" "Jun 08, 2023" "1.3.5" "SIERRA"
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- .SH NAME
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- sierra-usage \- How to use SIERRA. This covers all non-command line interface aspects.
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  .
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  .nr rst2man-indent-level 0
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  .
@@ -30,8 +27,11 @@ level margin: \\n[rst2man-indent\\n[rst2man-indent-level]]
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  .\" new: \\n[rst2man-indent\\n[rst2man-indent-level]]
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  .in \\n[rst2man-indent\\n[rst2man-indent-level]]u
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  ..
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+ .TH "SIERRA-USAGE" "7" "Sep 23, 2024" "1.3.11" "SIERRA"
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+ .SH NAME
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+ sierra-usage \- How to use SIERRA. This covers all non-command line interface aspects.
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  .sp
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- This covers everything which is (mostly) Platform independent and is not
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+ This covers everything which is (mostly) \fI\%Platform\fP independent and is not
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  the command line interface.
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  .SH SIERRA PIPELINE
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  .sp
@@ -46,21 +46,21 @@ express this as a research query on the command line, and then parses your query
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  to make changes to a template input file to generate launch commands and
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  experimental inputs to operationalize it. Switching from targeting platform A
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  (e.g., ARGoS) to platform B (e.g., ROS1+Gazebo) is as easy as changing a single
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- command line argument. SIERRA handles the "backend" aspects of defining
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+ command line argument. SIERRA handles the \(dqbackend\(dq aspects of defining
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  experimental inputs allowing you to focus on their \fIcontent\fP, rather than the
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  mechanics of how to turn the content into something that can be executed. See
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  also:
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  .INDENT 0.0
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  .IP \(bu 2
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- ln\-sierra\-support\-matrix
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+ \fI\%SIERRA Support Matrix\fP
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  .IP \(bu 2
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- ln\-sierra\-usage\-cli
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+ \fI\%Command Line Interface\fP
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  .UNINDENT
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  .sp
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  Part of default pipeline.
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  .SS Stage 2: Experiment Execution
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  .sp
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- SIERRA runs a previously generated Batch Experiment\&. Exactly which batch
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+ SIERRA runs a previously generated \fI\%Batch Experiment\fP\&. Exactly which batch
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  experiment SIERRA runs is determined by:
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  .INDENT 0.0
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  .IP \(bu 2
@@ -82,11 +82,11 @@ to stage 1, switching between execution environments is as easy as changing a
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  single command line argument. See also:
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  .INDENT 0.0
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  .IP \(bu 2
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- ln\-sierra\-exec\-env\-plugins
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+ \fI\%Execution Environment Plugins\fP
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  .IP \(bu 2
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- ln\-sierra\-platform\-plugins
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+ \fI\%Platform Plugins\fP
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  .IP \(bu 2
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- ln\-sierra\-support\-matrix
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+ \fI\%SIERRA Support Matrix\fP
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  .UNINDENT
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  .sp
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  Part of default pipeline.
@@ -100,11 +100,11 @@ includes one or more of:
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  .INDENT 0.0
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  .IP \(bu 2
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  Computing statistics over/about experimental data for stage 4 for use in graph
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- generation in stage 4. See ln\-sierra\-usage\-cli documentation for
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+ generation in stage 4. See \fI\%Command Line Interface\fP documentation for
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  \fB\-\-dist\-stats\fP for details.
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  .IP \(bu 2
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  Creating images from project CSV files for rendering in stage 4. See
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- ln\-sierra\-usage\-rendering\-project for details.
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+ \fI\%Project Rendering\fP for details.
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  .UNINDENT
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  .sp
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  Part of default pipeline.
@@ -128,8 +128,8 @@ SIERRA also has a rich model framework allowing you to run arbitrary models,
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  generate data, and plot it on the same figure as empirical results,
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  automatically. See ln\-sierra\-tutorials\-project\-models for details.
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  .sp
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- For some examples, see the "Generating Deliverables" section of
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- \fI\%2022 AAMAS Demo\fP <\fBhttps://www-users.cse.umn.edu/~harwe006/showcase/aamas-2022-demo\fP>\&. See ln\-sierra\-usage\-rendering for details about
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+ For some examples, see the \(dqGenerating Deliverables\(dq section of
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+ \fI\%2022 AAMAS Demo\fP <\fBhttps://www-users.cse.umn.edu/~harwe006/showcase/aamas-2022-demo\fP>\&. See \fI\%Rendering\fP for details about
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  rendering capabilities.
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  .sp
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  Part of default pipeline.
@@ -142,19 +142,19 @@ can be used to compare:
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  .INDENT 0.0
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  .IP \(bu 2
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  Different agent control algorithms which have all been run in the same
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- \fB\-\-scenario\fP\&. See ln\-sierra\-usage\-stage5\-intra\-scenario for details.
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+ \fB\-\-scenario\fP\&. See \fI\%Intra\-Scenario Comparison\fP for details.
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  .IP \(bu 2
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  A single \fB\-\-controller\fP across multiple scenarios. See
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- ln\-sierra\-usage\-stage5\-inter\-scenario for details.
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+ \fI\%Inter\-Scenario Comparison\fP for details.
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  .UNINDENT
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  .sp
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  Not part of default pipeline.
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  .SH PIPELINE STAGE 5
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  .sp
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- The main idea of this pipeline stage is to "collate" the results of one or more
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- Summary .csv files present in different Batch Experiments into a Inter\-Batch .csv file, and then use that file to
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- generate graphs. Any Summary .csv that is present in multiple
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- Batch Experiments can be used during stage 5! This
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+ The main idea of this pipeline stage is to \(dqcollate\(dq the results of one or more
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+ \fI\%Summary .csv\fP files present in different \fI\%Batch Experiments\fP into a \fI\%Inter\-Batch .csv\fP file, and then use that file to
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+ generate graphs. Any \fI\%Summary .csv\fP that is present in multiple
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+ \fI\%Batch Experiments\fP can be used during stage 5! This
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  gives this pipeline stage tremendous flexibility as a camera\-ready graph
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  generation tool.
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  .sp
@@ -166,7 +166,7 @@ SIERRA invocation), because the options are quite different, but you don\(aqt
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  .INDENT 0.0
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  .INDENT 3.5
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  You \fIcannot\fP use this stage before successfully running stage 4
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- for each of the Batch Experiments you
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+ for each of the \fI\%Batch Experiments\fP you
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  want to include on the final graph.
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  .UNINDENT
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  .UNINDENT
@@ -180,7 +180,7 @@ controllers in a single scenario (for example) could result in
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  linegraphs containing 3,6,9,..., lines with duplicated data. In
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  general, you want to delete the directories generated by stage 5
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  between successive runs. See
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- ln\-sierra\-usage\-runtime\-exp\-tree for details on what
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+ \fI\%SIERRA Runtime Directory Tree\fP for details on what
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  directories are generated.
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  .UNINDENT
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  .UNINDENT
@@ -188,7 +188,7 @@ directories are generated.
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  .sp
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  Intra\-scenario comparison compares the of experiments using one or more
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  controllers on the same \fB\-\-scenario\fP\&. To use it, you need to pass the
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- following options to SIERRA (see ln\-sierra\-usage\-cli for documentation):
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+ following options to SIERRA (see \fI\%Command Line Interface\fP for documentation):
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  .INDENT 0.0
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  .IP \(bu 2
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  \fB\-\-scenario\-comparison\fP
@@ -208,7 +208,7 @@ ln\-sierra\-tutorials\-project\-stage5\-config\-intra\&.
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  .sp
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  Inter\-scenario comparison compares the same \fB\-\-controller\fP across multiple
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  \fB\-\-scenarios\fP\&. To use it, you need to pass the following options to SIERRA
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- when running stage 5 (see ln\-sierra\-usage\-cli for documentation):
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+ when running stage 5 (see \fI\%Command Line Interface\fP for documentation):
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  .INDENT 0.0
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  .IP \(bu 2
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  \fB\-\-controller\-comparison\fP
@@ -297,35 +297,35 @@ for a previously used project on subsequent runs.
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  project root, which is \fBNOT\fP deleted on subsequent runs.
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  .INDENT 2.0
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  .IP \(bu 2
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- \fBmytemplate\-SS.12x6\fP \- The directory for the Batch Experiment
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+ \fBmytemplate\-SS.12x6\fP \- The directory for the \fI\%Batch Experiment\fP
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  is named from a combination of the template input file used
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  (\fB\-\-template\-input\-file\fP) and the scenario (\fB\-\-scenario\fP).
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  .INDENT 2.0
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  .IP \(bu 2
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- \fBexp\-inputs\fP \- Root directory for Experimental
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+ \fBexp\-inputs\fP \- Root directory for \fI\%Experimental\fP
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  inputs; each experiment in the batch gets their own directory in here.
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  .INDENT 2.0
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  .IP \(bu 2
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  \fBexp0\fP \- Within the input directory for each experiment in the
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  batch (there are 4 such directories in this example), there will be
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- an input file for each Experimental Run in the experiment,
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+ an input file for each \fI\%Experimental Run\fP in the experiment,
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  as well as a \fBcommands.txt\fP used by GNU parallel to run them all
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  in parallel. The leaf of the \fB\-\-template\-input\-file\fP, sans
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  extension, has the experimental run # appended to it
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- (e.g. \fBmy\-template_0.argos\fP is the input file for simulation 0).
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+ (e.g. \fBmy\-template_run0.argos\fP is the input file for simulation 0).
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  .INDENT 2.0
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  .INDENT 3.5
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  .INDENT 0.0
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  .IP \(bu 2
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  \fBcommands.txt\fP
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  .IP \(bu 2
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- \fBmy\-template_0.argos\fP
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+ \fBmy\-template_run0.argos\fP
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  .IP \(bu 2
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- \fBmy\-template_1.argos\fP
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+ \fBmy\-template_run1.argos\fP
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  .IP \(bu 2
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- \fBmy\-template_2.argos\fP
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+ \fBmy\-template_run2.argos\fP
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  .IP \(bu 2
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- \fBmy\-template_3.argos\fP
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+ \fBmy\-template_run3.argos\fP
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  .UNINDENT
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  .UNINDENT
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  .UNINDENT
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  \fBexp1\fP
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  .INDENT 2.0
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  .IP \(bu 2
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- \fBmy\-template_0.argos\fP
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+ \fBmy\-template_run0.argos\fP
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  .IP \(bu 2
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- \fBmy\-template_1.argos\fP
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+ \fBmy\-template_run1.argos\fP
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  .IP \(bu 2
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- \fBmy\-template_2.argos\fP
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+ \fBmy\-template_run2.argos\fP
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  .IP \(bu 2
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- \fBmy\-template_3.argos\fP
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+ \fBmy\-template_run3.argos\fP
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  .UNINDENT
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  .IP \(bu 2
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  \fBexp2\fP
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  etc., as configured in the XML input file.
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  .INDENT 2.0
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  .IP \(bu 2
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- \fBmy\-template_0_output\fP
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+ \fBmy\-template_run0_output\fP
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  .IP \(bu 2
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- \fBmy\-template_1_output\fP
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+ \fBmy\-template_run1_output\fP
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  .IP \(bu 2
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- \fBmy\-template_2_output\fP
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+ \fBmy\-template_run2_output\fP
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  .IP \(bu 2
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- \fBmy\-template_3_output\fP
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+ \fBmy\-template_run3_output\fP
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  .UNINDENT
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  .IP \(bu 2
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  \fBexp1\fP
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  .INDENT 2.0
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  .IP \(bu 2
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- \fBmy\-template_0_output\fP
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+ \fBmy\-template_run0_output\fP
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  .IP \(bu 2
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- \fBmy\-template_1_output\fP
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+ \fBmy\-template_run1_output\fP
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  .IP \(bu 2
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- \fBmy\-template_2_output\fP
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+ \fBmy\-template_run2_output\fP
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- \fBmy\-template_3_output\fP
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+ \fBmy\-template_run3_output\fP
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  .UNINDENT
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  .IP \(bu 2
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  \fBexp2\fP
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  .IP \(bu 2
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  \fB\&...\fP
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  .IP \(bu 2
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- \fBcollated\fP \- Contains Collated .csv files. During
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+ \fBcollated\fP \- Contains \fI\%Collated .csv\fP files. During
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  stage4, SIERRA will draw specific columns from .csv files under
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  \fBstatistics\fP according to configuration, and collate them under
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  here for graph generation of \fIinter\fP\-experiment graphs.
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  outputs which have been converted to graphs) which can be patched
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  together in stage 4 to generated videos. Each experiment will get its
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  own directory under here, with unique sub\-directories for each
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- different type of Experimental Run data captured for
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- imagizing. See ln\-sierra\-usage\-rendering\-project for more details.
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+ different type of \fI\%Experimental Run\fP data captured for
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+ imagizing. See \fI\%Project Rendering\fP for more details.
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  .IP \(bu 2
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  \fBvideos\fP \- Root directory for holding rendered videos generated
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  during stage 4 from either captured simulator frames for imagized
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  project files. Each experiment will get its own directory under here,
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- with See ln\-sierra\-usage\-rendering for more details.
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+ with See \fI\%Rendering\fP for more details.
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  .IP \(bu 2
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  \fBmodels\fP \- During stage4, the dataframes generated by all executed
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  models are stored under this directory. Each experiment in the batch
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  .sp
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  .nf
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  .ft C
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- \-\-pipeline 5\e
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- \-\-scenario\-comparison\e
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- \-\-batch\-criteria population_size.Log8\e
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- \-\-scenarios\-list=RN.16x16x2,PL.16x16x2\e
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- \-\-sierra\-root=$HOME/exp"
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+ \-\-pipeline 5 \e
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+ \-\-scenario\-comparison \e
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+ \-\-batch\-criteria population_size.Log8 \e
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+ \-\-scenarios\-list=RN.16x16x2,PL.16x16x2 \e
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+ \-\-sierra\-root=$HOME/exp\(dq
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  .fi
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  .UNINDENT
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- \-\-controllers\-list d0.CRW,d0.DPO\e
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- \-\-sierra\-root=$HOME/exp"
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+ \-\-pipeline 5 \e
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+ \-\-controller\-comparison \e
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+ \-\-batch\-criteria population_size.Log8 \e
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+ \-\-controllers\-list d0.CRW,d0.DPO \e
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+ \-\-sierra\-root=$HOME/exp\(dq
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  .ft P
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  .fi
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  .UNINDENT
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  .INDENT 0.0
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  .IP \(bu 2
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  \fBparallel\fP \- GNU parallel. Used during stage 2 when running
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- experiments (ARGoS, ROS1+Gazebo, ROS1+Robot platforms).
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+ experiments (\fI\%ARGoS\fP, \fI\%ROS1+Gazebo\fP, \fI\%ROS1+Robot\fP platforms).
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  .IP \(bu 2
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  \fBffmpeg\fP \- Used during stage 3 if imagizing is run. See
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+ \fI\%Platform Visual Capture\fP\&.
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  .IP \(bu 2
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  \fBXvfb\fP \- Used during stage 1 when generating simulation inputs, and
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+ during stage 2 when running experiments for the \fI\%ARGoS\fP
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+ \fI\%Platform\fP\&. See also \fI\%Platform Visual Capture\fP\&.
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+ experiments (\fI\%ROS1+Robot\fP platform).
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  \fBparallel\-rsync\fP \- Used during stage 1 when generating experiments
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+ experiments (\fI\%ROS1+Robot\fP platform).
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+ .IP \(bu 2
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+ \fBkillall\fP \- Used during stage 2 when running :term:
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+ \fI\%ARGoS\fP, \fI\%ROS1+Gazebo\fP experiments to cleanup after each
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+ experimental run.
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  .UNINDENT
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  .SH ENVIRONMENT VARIABLES
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  .INDENT 0.0
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  .TP
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  .B SIERRA_PLUGIN_PATH
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- Used for locating plugins\&. The directory \fIcontaining\fP a
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+ Used for locating \fI\%plugins\fP\&. The directory \fIcontaining\fP a
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  plugin directory outside the SIERRA source tree must be on
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  \fBSIERRA_PLUGIN_PATH\fP\&. Paths are added to \fBPYTHONPATH\fP as needed to load
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  it. This variable is used in stages 1\-5.
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- Used for locating projects; all projects specifiable with
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+ Used for locating \fI\%projects\fP; all projects specifiable with
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  \fB\-\-project\fP are directories found within the directories on this path. For
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  example, if you have a project \fB$HOME/git/projects/myproject\fP, then
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  as well as the library directory for your project \fB\&.so\fP\&. Checked to be
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  non\-empty before running stage 2 for all \fB\-\-exec\-env\fP plugins. SIERRA does
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  \fInot\fP modify this variable, so it needs to be setup properly prior to
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+ invoking SIERRA (i.e., the directory containing the \fI\%Project\fP \fB\&.so\fP
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  file needs to be on it). SIERRA can\(aqt know, in general, where the location of
586
- the C++ code corresponding to the loaded Project is.
590
+ the C++ code corresponding to the loaded \fI\%Project\fP is.
587
591
  .UNINDENT
588
592
  .INDENT 0.0
589
593
  .TP
@@ -617,7 +621,7 @@ defined and \fB\-\-nodefile\fP is not passed SIERRA will throw an error.
617
621
  .TP
618
622
  .B PARALLEL
619
623
  When running on some execution environments, such as \fBhpc.slurm,hpc.pbs\fP,
620
- any and all environment variables needed by your Project should be
624
+ any and all environment variables needed by your \fI\%Project\fP should be
621
625
  exported via the \fBPARALLEL\fP environment variable before invoking SIERRA,
622
626
  because GNU parallel does not export the environment of the node it is
623
627
  launched from to slave nodes (or even on the local machine). Something like:
@@ -626,7 +630,7 @@ launched from to slave nodes (or even on the local machine). Something like:
626
630
  .sp
627
631
  .nf
628
632
  .ft C
629
- export PARALLEL="\-\-workdir . \e
633
+ export PARALLEL=\(dq\-\-workdir . \e
630
634
  \-\-env PATH \e
631
635
  \-\-env LD_LIBRARY_PATH \e
632
636
  \-\-env LOADEDMODULES \e
@@ -644,19 +648,19 @@ export PARALLEL="\-\-workdir . \e
644
648
  \-\-env OMP_THREAD_LIMIT \e
645
649
  \-\-env OMP_WAIT_POLICY \e
646
650
  \-\-env SIERRA_ARCH \e
647
- \-\-env SIERRA_PLUGIN_PATH"
651
+ \-\-env SIERRA_PLUGIN_PATH\(dq
648
652
  .ft P
649
653
  .fi
650
654
  .UNINDENT
651
655
  .UNINDENT
652
656
  .sp
653
657
  Don\(aqt forget to include \fI\%ARGOS_PLUGIN_PATH\fP,
654
- \fI\%ROS_PACKAGE_PATH\fP, etc., depending on your chosen Platform\&.
658
+ \fI\%ROS_PACKAGE_PATH\fP, etc., depending on your chosen \fI\%Platform\fP\&.
655
659
  .UNINDENT
656
660
  .INDENT 0.0
657
661
  .TP
658
662
  .B PARALLEL_SHELL
659
- SIERRA sets up the Experiment execution environments by running one
663
+ SIERRA sets up the \fI\%Experiment\fP execution environments by running one
660
664
  or more shell commands in a subprocess (treated as a \fBshell\fP, which means
661
665
  that \fBparallel\fP can\(aqt determine \fBSHELL\fP, and therefore defaults to
662
666
  \fB/bin/sh\fP, which is not what users expect. SIERRA explicitly sets
@@ -673,7 +677,7 @@ script).
673
677
  .UNINDENT
674
678
  .SH CONFIGURABLE SIERRA VARIABLES
675
679
  .sp
676
- Non\-Batch Criteria variables which you can use to configure
680
+ Non\-\fI\%Batch Criteria\fP variables which you can use to configure
677
681
  simulations. All batch criteria are variables, but not all variables are batch
678
682
  criteria.
679
683
  .INDENT 0.0
@@ -682,9 +686,9 @@ criteria.
682
686
  .UNINDENT
683
687
  .SS Experiment Setup
684
688
  .sp
685
- Configure Experiment time: length, controller cadence (Tick
686
- duration/timestep), and how many datapoints to capture per Experimental
687
- Run\&.
689
+ Configure \fI\%Experiment\fP time: length, controller cadence (\fI\%Tick\fP
690
+ duration/timestep), and how many datapoints to capture per \fI\%Experimental
691
+ Run\fP\&.
688
692
  .SS Cmdline Syntax
689
693
  .sp
690
694
  \fBT{duration}[.K{ticks_per_sec}][.N{n_datapoints}\fP
@@ -694,11 +698,11 @@ Run\&.
694
698
  .IP \(bu 2
695
699
  \fBticks_per_sec\fP \- How many times each controller will be run per second.
696
700
  .IP \(bu 2
697
- \fBn_datapoints\fP \- # datapoints per Experimental Run to be captured;
701
+ \fBn_datapoints\fP \- # datapoints per \fI\%Experimental Run\fP to be captured;
698
702
  the capture interval (if configurable) should be adjusted in
699
- Project\-derived class from the platform "Experiment setup class"
703
+ \fI\%Project\fP\-derived class from the platform \(dqExperiment setup class\(dq
700
704
  (e.g., \fBsierra.plugins.platform.argos.variables.exp_setup.ExpSetup\fP for
701
- ARGoS).
705
+ \fI\%ARGoS\fP).
702
706
  .UNINDENT
703
707
  .SS Examples
704
708
  .INDENT 0.0
@@ -1,8 +1,5 @@
1
1
  .\" Man page generated from reStructuredText.
2
2
  .
3
- .TH "SIERRA" "7" "Jun 08, 2023" "1.3.5" "SIERRA"
4
- .SH NAME
5
- sierra \- reSearch pIpEline for Reproducability, Reusability, and Automation.
6
3
  .
7
4
  .nr rst2man-indent-level 0
8
5
  .
@@ -30,9 +27,12 @@ level margin: \\n[rst2man-indent\\n[rst2man-indent-level]]
30
27
  .\" new: \\n[rst2man-indent\\n[rst2man-indent-level]]
31
28
  .in \\n[rst2man-indent\\n[rst2man-indent-level]]u
32
29
  ..
30
+ .TH "SIERRA" "7" "Sep 23, 2024" "1.3.11" "SIERRA"
31
+ .SH NAME
32
+ sierra \- reSearch pIpEline for Reproducability, Reusability, and Automation.
33
33
  .SH SYNOPSIS
34
34
  .sp
35
- This the "main menu" of the SIERRA reference manual, which captures most, but
35
+ This the \(dqmain menu\(dq of the SIERRA reference manual, which captures most, but
36
36
  not all of its documentation. For the full experience, look at the online docs
37
37
  at \fI\%https://sierra.readthedocs.io/en/master\fP\&.
38
38
  .SH COMPONENTS
@@ -65,7 +65,7 @@ execution before proceeding to the next step. SIERRA should rarely crash with a
65
65
  cryptic interpreter error message/exception, but if it does, please report it so
66
66
  I can fix it and/or create a better error message.
67
67
  .sp
68
- Errors should be reported to \fI\%https://github.com:jharwell/sierra.git\fP\&.
68
+ Errors should be reported to \fI\%https://github.com/jharwell/sierra.git\fP\&.
69
69
  .SH RETURN VALUE
70
70
  .sp
71
71
  SIERRA will always return 0, unless it crashes with an exception or a failed
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: sierra-research
3
- Version: 1.3.5
3
+ Version: 1.3.11
4
4
  Summary: Automation framework for the scientific method in AI research
5
5
  Home-page: https://github.com/jharwell/sierra
6
6
  Author: John Harwell
@@ -11,6 +11,9 @@ Platform: linux
11
11
  Platform: osx
12
12
  Classifier: Programming Language :: Python :: 3.8
13
13
  Classifier: Programming Language :: Python :: 3.9
14
+ Classifier: Programming Language :: Python :: 3.10
15
+ Classifier: Programming Language :: Python :: 3.11
16
+ Classifier: Programming Language :: Python :: 3.12
14
17
  Classifier: License :: OSI Approved :: MIT License
15
18
  Classifier: Environment :: Console
16
19
  Classifier: Operating System :: MacOS :: MacOS X
@@ -35,7 +38,7 @@ Requires-Dist: coloredlogs
35
38
  Requires-Dist: implements
36
39
  Requires-Dist: retry
37
40
  Provides-Extra: devel
38
- Requires-Dist: pylint (==2.14.5) ; extra == 'devel'
41
+ Requires-Dist: pylint ==2.14.5 ; extra == 'devel'
39
42
  Requires-Dist: pytype ; extra == 'devel'
40
43
  Requires-Dist: pydocstyle ; extra == 'devel'
41
44
  Requires-Dist: xenon ; extra == 'devel'
@@ -52,8 +55,8 @@ Requires-Dist: mypy-runner ; extra == 'devel'
52
55
  Requires-Dist: build ; extra == 'devel'
53
56
  Requires-Dist: twine ; extra == 'devel'
54
57
  Requires-Dist: setuptools ; extra == 'devel'
55
- Requires-Dist: sphinx (==4.4.0) ; extra == 'devel'
56
- Requires-Dist: docutils (==0.16) ; extra == 'devel'
58
+ Requires-Dist: sphinx ==6.0.0 ; extra == 'devel'
59
+ Requires-Dist: docutils ==0.19 ; extra == 'devel'
57
60
  Requires-Dist: sphinx-rtd-theme ; extra == 'devel'
58
61
  Requires-Dist: sphinx-argparse ; extra == 'devel'
59
62
  Requires-Dist: sphinx-tabs ; extra == 'devel'
@@ -73,17 +76,13 @@ SIERRA (reSearch pIpEline for Reproducibility, Reusability, and Automation)
73
76
  :target: https://pypi.python.org/pypi/sierra-research/
74
77
 
75
78
  .. |supported-pythons| image:: https://img.shields.io/pypi/pyversions/sierra-research.svg
76
- :target: https://pypi.python.org/pypi/sierra-research/
77
79
 
78
- .. |linux-supported| image:: https://svgshare.com/i/Zhy.svg
79
- .. |osx-supported| image:: https://svgshare.com/i/ZjP.svg
80
+ .. |os-supported| image:: https://img.shields.io/badge/os-linux%20%7C%20macOS-blue
80
81
 
81
- .. |ci-integration-master| image:: https://github.com/jharwell/sierra/actions/workflows/integration-all.yml/badge.svg?branch=master
82
- .. |ci-analysis-master| image:: https://github.com/jharwell/sierra/actions/workflows/static-analysis.yml/badge.svg?branch=master
82
+ .. |ci-analysis-master| image:: https://github.com/jharwell/sierra/actions/workflows/analysis-top.yml/badge.svg?branch=master
83
83
  .. |ci-coverage-master| image:: https://coveralls.io/repos/github/jharwell/sierra/badge.svg?branch=master
84
84
 
85
- .. |ci-integration-devel| image:: https://github.com/jharwell/sierra/actions/workflows/integration-all.yml/badge.svg?branch=devel
86
- .. |ci-analysis-devel| image:: https://github.com/jharwell/sierra/actions/workflows/static-analysis.yml/badge.svg?branch=devel
85
+ .. |ci-analysis-devel| image:: https://github.com/jharwell/sierra/actions/workflows/analysis-top.yml/badge.svg?branch=devel
87
86
  .. |ci-coverage-devel| image:: https://coveralls.io/repos/github/jharwell/sierra/badge.svg?branch=devel
88
87
 
89
88
  .. |license| image:: https://img.shields.io/badge/License-MIT-blue.svg
@@ -95,24 +94,17 @@ SIERRA (reSearch pIpEline for Reproducibility, Reusability, and Automation)
95
94
  :target: https://sierra.readthedocs.io/en/master/
96
95
 
97
96
  .. |maintenance| image:: https://img.shields.io/badge/Maintained%3F-yes-green.svg
98
- :target: https://gitHub.com/jharwell/sierra/graphs/commit-activity
99
97
 
100
98
 
101
- :Usage:
102
- |pepy-downloads| |pypi-version| |supported-pythons| |linux-supported|
103
- |osx-supported|
104
-
105
- :Release:
106
-
107
- |ci-analysis-master| |ci-integration-master| |ci-coverage-master|
108
-
109
- :Development:
110
-
111
- |ci-analysis-devel| |ci-integration-devel| |ci-coverage-devel|
112
-
113
- :Misc:
114
-
115
- |license| |doi| |docs| |maintenance|
99
+ +---------------+--------------------------------------------------------------------+
100
+ | Usage | |pepy-downloads| |pypi-version| |supported-pythons| |os-supported| |
101
+ +---------------+--------------------------------------------------------------------+
102
+ | Release | |ci-analysis-master| |ci-coverage-master| |
103
+ +---------------+--------------------------------------------------------------------+
104
+ | Development | |ci-analysis-devel| |ci-coverage-devel| |
105
+ +---------------+--------------------------------------------------------------------+
106
+ | Miscellaneous | |license| |doi| |docs| |maintenance| |
107
+ +---------------+--------------------------------------------------------------------+
116
108
 
117
109
 
118
110
  TL;DR
@@ -1,19 +1,19 @@
1
1
  sierra/__init__.py,sha256=LrL9-6GqsT0Lvo6jb54x4m-DL1NywTXG8JKSrYis7Xo,186
2
2
  sierra/main.py,sha256=K46LsG16cSqTMfNiT3vSSF3SLh5BjAUPVqPjZ6A2Oxs,6618
3
- sierra/version.py,sha256=AbRCxPY1PXun3NLlT2T9qZMwI6IDu3bMujuHNw9h38U,243
3
+ sierra/version.py,sha256=D-OvGRKNdSWecG-yBJLuOZqHhcOpt7Lbhw_2JsCrTKU,244
4
4
  sierra/core/__init__.py,sha256=IwACyV8LoLuIx3TBzC6WdcRTq9D-0GO7nguLxY64QbI,188
5
5
  sierra/core/cmdline.py,sha256=j9eAStCFolUyzvUSzqeRE1BNgtxDTgaYqDiaTTYFUBQ,58191
6
- sierra/core/config.py,sha256=IGekEo5htDNi-d9JTZwVtfOOYA4LcCvGPeUrIenuz1s,4557
6
+ sierra/core/config.py,sha256=zezJgparLsD4HtgfzPvlxmwBX-6X3Ntdq2kkMlxvFQs,4562
7
7
  sierra/core/logging.py,sha256=jq_bryJDLeMfzsRsWkDpQI20HvOJqd3b14Ank9a-1DI,985
8
8
  sierra/core/platform.py,sha256=jOlm4PVPNp9EPjtckaYR66t5p6A4fQwBxmjZoFCHz-o,17359
9
9
  sierra/core/plugin.py,sha256=Bc4n1_Q5VvorAsbwt76K6cZmSrU-f0m2tNyQSWXYsOE,3500
10
10
  sierra/core/plugin_manager.py,sha256=PB5AmPpjcl9ct-F8_x_tVwRioOLjHD0Vp66rQtkLrVc,12535
11
11
  sierra/core/root_dirpath_generator.py,sha256=pEJd_9a_eWSWLHPDv4fd-HWnbB0MPZG9c_ukXe3xl3k,8173
12
- sierra/core/startup.py,sha256=raE4kgNarzcDIDlgw2cHFenH3_qJJehEq4kBCE4Rnpk,5422
12
+ sierra/core/startup.py,sha256=Olxd97W4gOykzkpMnliUr4gzWGvVGsQQGqKo51br9-s,5412
13
13
  sierra/core/stat_kernels.py,sha256=wBTWEXw2XvdSfxghNlhUbKkn1XjgTP7_d0OBM6lUvWE,6030
14
14
  sierra/core/storage.py,sha256=VJ5IqNM_grOMYH5vq6bI5EO4muySERaj4TI-Ngzny6w,1300
15
15
  sierra/core/types.py,sha256=R5gW2u9nBPHJJ7HdliFzq999SwvWgYzPGX0tlyWAiWQ,2049
16
- sierra/core/utils.py,sha256=TOlAupVdD9KRYIkv3IjUcb4hO6WLOV5zzsQbnjN74bU,12471
16
+ sierra/core/utils.py,sha256=KsgUnsG7npKGnkYkcIQqnD_vAmRcrdfnMiU4rcGCn1s,12464
17
17
  sierra/core/vector.py,sha256=wVCoOU7rS7hYpmiOElh0RAF6xlKRuDr7fBD13ykpkys,3843
18
18
  sierra/core/experiment/__init__.py,sha256=6b7RQQobZUX1hRmfmq_bZ3KovuTKeBYNLWwEG_axTxQ,145
19
19
  sierra/core/experiment/bindings.py,sha256=6BSg3Li5D1ZWRxxPSXJYZ8TQlGwIfQupxbLSceTs7Pg,10152
@@ -22,15 +22,15 @@ sierra/core/experiment/spec.py,sha256=QpCOHCi1OGWuCRVS-YnDPwflimRStcqCzAVMWf7IcE
22
22
  sierra/core/experiment/xml.py,sha256=jgAG_5J4midlf-uOQIkqfK9kFnXTNc0OFhf-3yEMA3c,14619
23
23
  sierra/core/generators/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
24
24
  sierra/core/generators/controller_generator_parser.py,sha256=7Jr0K4p0O0PQRW0JoF8UDCB9IAEIWRGZoZ1J0DLpoXw,873
25
- sierra/core/generators/exp_creator.py,sha256=QdfOvsGrtx7SEjd1DzT4XOf2QK9GqZQ3nGlAFV7M_lQ,15596
25
+ sierra/core/generators/exp_creator.py,sha256=IjojKSGP-rWsApcK5qy13uQtLKDMjiytUotNADTlLq0,15599
26
26
  sierra/core/generators/exp_generators.py,sha256=VSSmjmP8VQXzBrXnzASEzN_fJS6TPr_jPnlAlxvwsF4,5574
27
27
  sierra/core/generators/generator_factory.py,sha256=Os_kkW76XEoC5OyoOeGNQFHbRaNP9xJ8JxtCC48TfPE,8919
28
28
  sierra/core/graphs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
29
- sierra/core/graphs/heatmap.py,sha256=ehpdpnsFJiJgfdNQA2FyqwTYrn7f4cu6B3fwJ1jkppc,12218
29
+ sierra/core/graphs/heatmap.py,sha256=SgiKIq948o_E_FeOZaslGYr354-5keCRdvlGHjTaXTo,12227
30
30
  sierra/core/graphs/scatterplot2D.py,sha256=boUvsHbN5dJYyKsrm5eRSvW2T6_xi3fmYFVu-mjhmnY,3685
31
- sierra/core/graphs/stacked_line_graph.py,sha256=pXyCDCP3YOv-A3skl4dCPWNKF8SzQ76Wup80xdClw6I,9125
31
+ sierra/core/graphs/stacked_line_graph.py,sha256=9zjKbqfstuz9px4OfxWe6dV2pouM6qKcl1OBorxxOZQ,9255
32
32
  sierra/core/graphs/stacked_surface_graph.py,sha256=XH35cVtoqaF2hRv_TrjlF0F4GsP1DO_Fw35MdEGCai8,8125
33
- sierra/core/graphs/summary_line_graph.py,sha256=G7w7_kTXevB5aw4o6BfRE3tTNBYCbfCrlZHfxh7eCa4,13573
33
+ sierra/core/graphs/summary_line_graph.py,sha256=St8oiLFf6VqQoq7daYjXjqanKdXzEQZknk5rmBD8ojE,13703
34
34
  sierra/core/hpc/__init__.py,sha256=IG0EW-YZRtbyq01-G62wdgzI5hZ9OBqEbC1-QQhJFsI,167
35
35
  sierra/core/hpc/cmdline.py,sha256=wtnI0C__i6eKLrj8O5j5jNreSRBFp75xlkd35NeaciU,5186
36
36
  sierra/core/models/__init__.py,sha256=uAPXNomKYGVVsvnhTSpSrltW0S3TqRj6dOvVvd8SXcc,168
@@ -47,9 +47,9 @@ sierra/core/pipeline/stage3/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMp
47
47
  sierra/core/pipeline/stage3/imagizer.py,sha256=BspVVNc7VhCNkt_jGXpFFaSlLr7bvSQiaN1rHXhxoWY,5094
48
48
  sierra/core/pipeline/stage3/pipeline_stage3.py,sha256=lpBugfd-uASYqE1PgOiDIpVI4GcpCPnO6D_AkBIKZW8,4572
49
49
  sierra/core/pipeline/stage3/run_collator.py,sha256=olq8wUiBWv4uK0mX2mo2siClt97vV2pxkfeDa_fTX1M,12585
50
- sierra/core/pipeline/stage3/statistics_calculator.py,sha256=uFuGW18LnHUKn9tfm8PveB8PGETbWRwvkzFz0EXCmlg,18186
50
+ sierra/core/pipeline/stage3/statistics_calculator.py,sha256=u1hF4gjLRUky4CHshqI_w4EXSYz6HYvXJ2h0gb0XNhc,18206
51
51
  sierra/core/pipeline/stage4/__init__.py,sha256=ttj4q54PLfuUQfrwH6Pnl7z289sDpQlpU_3jSvJVw5g,80
52
- sierra/core/pipeline/stage4/graph_collator.py,sha256=yVeu9Tr0pdq1iGnPO5IUVun3nI1r6-Hnd1rrdMIISPo,12042
52
+ sierra/core/pipeline/stage4/graph_collator.py,sha256=xoJi_Rnls7IadTv8grRJA9byq_b1RJnjA0AJw9ve3tU,12124
53
53
  sierra/core/pipeline/stage4/inter_exp_graph_generator.py,sha256=GWFqivwyteL5qVIR8Ta5oJv-zecHb_RqPAU6EYRSC1k,9591
54
54
  sierra/core/pipeline/stage4/intra_exp_graph_generator.py,sha256=zdpR7l6jUNKJdOKkCrkbLMrYS3MEBOcwPMOOfB8lMyY,13814
55
55
  sierra/core/pipeline/stage4/model_runner.py,sha256=RkDmjzeZvqxEiZEwuIfw3wiwvKUXH8libBAX_w9K_5w,6745
@@ -118,16 +118,16 @@ sierra/plugins/robot/turtlebot3/plugin.py,sha256=r7TSnboGUI5cCqT_ty1X9KVJ770pMcP
118
118
  sierra/plugins/storage/__init__.py,sha256=6b7RQQobZUX1hRmfmq_bZ3KovuTKeBYNLWwEG_axTxQ,145
119
119
  sierra/plugins/storage/csv/__init__.py,sha256=6b7RQQobZUX1hRmfmq_bZ3KovuTKeBYNLWwEG_axTxQ,145
120
120
  sierra/plugins/storage/csv/plugin.py,sha256=EnFIAmeEpAcVUlbuGG3I3sdb9AVO5zg4k2pa2C1dLFM,938
121
- sierra_research-1.3.5.data/data/share/man/man1/sierra-cli.1,sha256=2475tBsi018sW70tehlYaBeSgQmhWn571-UVbz6fvrc,54227
122
- sierra_research-1.3.5.data/data/share/man/man7/sierra-examples.7,sha256=0nNm-vUOL7nuoxaehLkUoFq-c3ormAfY7hhi_VxsLLQ,17940
123
- sierra_research-1.3.5.data/data/share/man/man7/sierra-exec-envs.7,sha256=-YUevZd6jzD5JjfTtP3xL-dYPKDlUtvJyQdkZgvLsa4,7796
124
- sierra_research-1.3.5.data/data/share/man/man7/sierra-glossary.7,sha256=YT8uVfBe2jFMi_AhkxqPqQuyyRJo_RFzbnZoW65cyUs,10921
125
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@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: bdist_wheel (0.40.0)
2
+ Generator: setuptools (75.1.0)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5