shesha-geometry 0.1.0__py3-none-any.whl → 0.1.2__py3-none-any.whl

shesha/__init__.py

@@ -42,7 +42,7 @@ from .core import (
 
 from . import bio
 
-__version__ = "0.1.0"
+__version__ = "0.1.2"
 __author__ = "Prashant Raju"
 
 __all__ = [

{shesha_geometry-0.1.0.dist-info → shesha_geometry-0.1.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: shesha-geometry
-Version: 0.1.0
+Version: 0.1.2
 Summary: Self-consistency metrics for representational stability analysis
 Author-email: Prashant Raju <rajuprashant@gmail.com>
 License: MIT
@@ -8,7 +8,7 @@ Project-URL: Homepage, https://github.com/prashantcraju/shesha
 Project-URL: Documentation, https://github.com/prashantcraju/shesha#readme
 Project-URL: Repository, https://github.com/prashantcraju/shesha
 Project-URL: Issues, https://github.com/prashantcraju/shesha/issues
-Keywords: representation learning,neural networks,geometric stability,geometric analysis,manifold analysis,latent space,single-cell,crispr,perturb-seq,anndata,functional genomics,phenotypic stability,computational biology,scanpy,llm alignment,concept drift,model steering,ai safety,constitutional ai,perturbation analysis
+Keywords: shesha,geometry,representation learning,neural networks,geometric stability,geometric analysis,manifold analysis,latent space,single-cell,crispr,perturb-seq,anndata,functional genomics,phenotypic stability,computational biology,scanpy,llm alignment,concept drift,model steering,ai safety,constitutional ai,perturbation analysis
 Classifier: Development Status :: 4 - Beta
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: MIT License
@@ -19,6 +19,9 @@ Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Classifier: Topic :: Scientific/Engineering :: Mathematics
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE
@@ -31,6 +34,7 @@ Requires-Dist: pytest-cov; extra == "dev"
 Requires-Dist: black; extra == "dev"
 Requires-Dist: ruff; extra == "dev"
 
+[![PyPI version](https://img.shields.io/pypi/v/shesha-geometry.svg)](https://pypi.org/project/shesha-geometry/)
 [![DOI](https://zenodo.org/badge/1133185691.svg)](https://doi.org/10.5281/zenodo.18227453)
 <p align="center">
     <img src="https://i.imgur.com/oJ5YhBo.jpg" alt="Shesha Logo" width="300">
@@ -218,6 +222,18 @@ print(f"KLF1 Magnitude: {magnitude['KLF1']:.3f}")  # e.g., 2.40 (High = Strong)
 ```
 
 
+## Tutorials
+
+Explore `shesha` with these interactive notebooks:
+
+*  [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/prashantcraju/shesha/blob/main/tutorials/llm_embeddings_tutorial.ipynb) **LLM Embeddings**: **Geometric Stability:** Analyze embedding stability across layers and models using `feature_split`. 
+*  [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/prashantcraju/shesha/blob/main/tutorials/steering_vectors_tutorial.ipynb) **Steering Vectors**:  **Consistency Analysis:** Compute steering vectors from contrastive pairs and measure their effectiveness and consistency. 
+* [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/prashantcraju/shesha/blob/main/tutorials/vision_models_tutorial.ipynb) **Vision Models**:  **Architecture Comparison:** Compare geometric stability and class separability across ResNets, ViTs, and other vision architectures. 
+* [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/prashantcraju/shesha/blob/main/tutorials/drift_tutorial.ipynb) **Representational Drift**: **Perturbation Analysis:** Measure drift caused by Gaussian noise injection and LoRA fine-tuning using `rdm_drift`. 
+* [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/prashantcraju/shesha/blob/main/tutorials/training_drift_tutorial.ipynb) **Training Dynamics**: **Live Monitoring:** Track geometric stability during model training to detect representation collapse or divergence. 
+* [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/prashantcraju/shesha/blob/main/tutorials/crispr_tutorial.ipynb) **CRISPR (Bio)**: **Single-Cell Analysis:** Use `shesha.bio` to analyze stability and effect sizes in single-cell CRISPR perturbation experiments. 
+
+
 ## API Reference
 
 ### `shesha.feature_split(X, n_splits=30, metric='cosine', seed=None, max_samples=1600)`
@@ -373,17 +389,17 @@ If you use `shesha-geometry`, please cite:
     title = {Shesha: Self-consistency Metrics for Representational Stability},
     author = {Prashant C. Raju},
     year = {2026},
-    url = {https://github.com/prashantcraju/shesha},
     publisher = {Zenodo},
-    doi = {10.5281/zenodo.18227454},
-    note = {Python package version 0.1.0}
+    doi = {10.5281/zenodo.18227453},
+    url = {https://doi.org/10.5281/zenodo.18227453},
+    copyright = {MIT License}
 }
 
 @article{raju2026geometric,
-    title={Geometric Stability: The Missing Axis of Representations},
-    author={Prashant C. Raju},
-    journal={arXiv},
-    year={2026}
+  title={Geometric Stability: The Missing Axis of Representations},
+  author={Raju, Prashant C.},
+  journal={arXiv preprint arXiv:2601.09173},
+  year={2026}
 }
 ```
 

{shesha_geometry-0.1.0.dist-info → shesha_geometry-0.1.2.dist-info}/RECORD

@@ -1,13 +1,13 @@
 examples/tutorial.py,sha256=HoDNK_NgCEW7_PkfOkKswNH2mitCHPJ56yuldiH8skI,12167
-shesha/__init__.py,sha256=KaDsrk_j30OeFn7M70nHmCXp5MJ-cumS-eiT7PZyJQY,1390
+shesha/__init__.py,sha256=L_C5zLsGMT--09j7OpR_Sj5xxruQK0dGrs0jotsTGt8,1390
 shesha/bio.py,sha256=4fZHfLfkMIbAYEJ80MJreP8Hg9ApoOQUtk0uDuX1ejo,10465
 shesha/core.py,sha256=_M--xVtbOBRujpCeSNu_Ala_gTjDhfJUbv8BvaaUHGM,19986
 tests/__init__.py,sha256=YYq097nXxIO0mWUP8sqw6YS-CSjFRWVEa1lPN7ATA0U,27
 tests/test_bio.py,sha256=71poE9FbfjWnAQFYFHAiPsGbdyGurRmxX6qRxHuEths,2142
 tests/test_core.py,sha256=UmVV56VkmM71ZPySsOEKEG4_sXt9D0dvXX5cfB-EGrI,5545
 tests/test_crispr.py,sha256=tUSOgXLyvd9PkEuXZ7NeqYWMWcu0aUMcXOdP7ErVLMg,6202
-shesha_geometry-0.1.0.dist-info/LICENSE,sha256=HWzfciMdWWnz_MNV5xEni15hw7Jnks3FWBmhRbb-bFk,1072
-shesha_geometry-0.1.0.dist-info/METADATA,sha256=J_LirSGGwV0amvXS5i3F7kP9tgHzFZhanT1eHRvvrE8,13036
-shesha_geometry-0.1.0.dist-info/WHEEL,sha256=iAkIy5fosb7FzIOwONchHf19Qu7_1wCWyFNR5gu9nU0,91
-shesha_geometry-0.1.0.dist-info/top_level.txt,sha256=30aOCV4WW_bVgWOawbrRZPahW9ilJ-S9jd-oj4-Rucw,22
-shesha_geometry-0.1.0.dist-info/RECORD,,
+shesha_geometry-0.1.2.dist-info/LICENSE,sha256=HWzfciMdWWnz_MNV5xEni15hw7Jnks3FWBmhRbb-bFk,1072
+shesha_geometry-0.1.2.dist-info/METADATA,sha256=U49bgOEBvr6iEaPOmpcFxKVEhT0EMQ6lTz6_k9hrrvo,15429
+shesha_geometry-0.1.2.dist-info/WHEEL,sha256=WnJ8fYhv8N4SYVK2lLYNI6N0kVATA7b0piVUNvqIIJE,91
+shesha_geometry-0.1.2.dist-info/top_level.txt,sha256=30aOCV4WW_bVgWOawbrRZPahW9ilJ-S9jd-oj4-Rucw,22
+shesha_geometry-0.1.2.dist-info/RECORD,,

{shesha_geometry-0.1.0.dist-info → shesha_geometry-0.1.2.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.3.2)
+Generator: setuptools (75.3.3)
 Root-Is-Purelib: true
 Tag: py3-none-any