shepherd-core 2024.4.1__py3-none-any.whl → 2024.5.1__py3-none-any.whl

shepherd_core/testbed_client/fixtures.py

@@ -1,3 +1,5 @@
+"""Current implementation of a file-based database."""
+
 import copy
 import os
 import pickle
@@ -29,7 +31,7 @@ from .cache_path import cache_user_path
 
 
 class Fixture:
-    """Current implementation of a file-based database"""
+    """Current implementation of a file-based database."""
 
     def __init__(self, model_type: str) -> None:
         self.model_type: str = model_type.lower()
@@ -63,7 +65,8 @@ class Fixture:
             key = int(key) if key.isdigit() else None
         if key in self.elements_by_id:
             return self.elements_by_id[int(key)]
-        raise ValueError(f"{self.model_type} '{key}' not found!")
+        msg = f"{self.model_type} '{key}' not found!"
+        raise ValueError(msg)
 
     def __iter__(self) -> Self:
         self._iter_index = 0
@@ -95,12 +98,14 @@ class Fixture:
             if "name" in values and len(chain) < 1:
                 base_name = values.get("name")
                 if base_name in chain:
+                    msg = f"Inheritance-Circle detected ({base_name} already in {chain})"
                     raise ValueError(
-                        f"Inheritance-Circle detected ({base_name} already in {chain})",
+                        msg,
                     )
                 if base_name == fixture_name:
+                    msg = f"Inheritance-Circle detected ({base_name} == {fixture_name})"
                     raise ValueError(
-                        f"Inheritance-Circle detected ({base_name} == {fixture_name})",
+                        msg,
                     )
                 chain.append(base_name)
             fixture_base = copy.copy(self[fixture_name])
@@ -149,15 +154,18 @@ class Fixture:
     def query_id(self, _id: int) -> dict:
         if isinstance(_id, int) and _id in self.elements_by_id:
             return self.elements_by_id[_id]
-        raise ValueError(f"Initialization of {self.model_type} by ID failed - {_id} is unknown!")
+        msg = f"Initialization of {self.model_type} by ID failed - {_id} is unknown!"
+        raise ValueError(msg)
 
     def query_name(self, name: str) -> dict:
         if isinstance(name, str) and name.lower() in self.elements_by_name:
             return self.elements_by_name[name.lower()]
-        raise ValueError(f"Initialization of {self.model_type} by name failed - {name} is unknown!")
+        msg = f"Initialization of {self.model_type} by name failed - {name} is unknown!"
+        raise ValueError(msg)
 
 
 def file_older_than(file: Path, delta: timedelta) -> bool:
+    """Decide if file is older than a specific duration of time."""
     cutoff = local_now() - delta
     mtime = datetime.fromtimestamp(file.stat().st_mtime, tz=local_tz())
     if mtime < cutoff:
@@ -166,6 +174,8 @@ def file_older_than(file: Path, delta: timedelta) -> bool:
 
 
 class Fixtures:
+    """A collection of individual fixture-elements."""
+
     suffix = ".yaml"
 
     @validate_call
@@ -194,9 +204,12 @@ class Fixtures:
             for file in files:
                 self.insert_file(file)
 
-            save_path.parent.mkdir(parents=True, exist_ok=True)
-            with save_path.open("wb", buffering=-1) as fd:
-                pickle.dump(self.components, fd)
+            if len(self.components) < 1:
+                logger.error(f"No fixture-components found at {self.file_path.as_posix()}")
+            else:
+                save_path.parent.mkdir(parents=True, exist_ok=True)
+                with save_path.open("wb", buffering=-1) as fd:
+                    pickle.dump(self.components, fd)
 
     @validate_call
     def insert_file(self, file: Path) -> None:
@@ -218,17 +231,20 @@ class Fixtures:
         key = key.lower()
         if key in self.components:
             return self.components[key]
-        raise ValueError(f"Component '{key}' not found!")
+        msg = f"Component '{key}' not found!"
+        raise ValueError(msg)
 
     def keys(self):  # noqa: ANN201
         return self.components.keys()
 
     @staticmethod
     def to_file(file: Path) -> None:
-        raise RuntimeError(f"Not Implemented, TODO (val={file})")
+        msg = f"TODO (val={file})"
+        raise NotImplementedError(msg)
 
 
 def get_files(start_path: Path, suffix: str, recursion_depth: int = 0) -> List[Path]:
+    """Generate a recursive list of all files in a directory."""
     if recursion_depth == 0:
         suffix = suffix.lower().split(".")[-1]
     dir_items = os.scandir(start_path)

shepherd_core/testbed_client/user_model.py

@@ -1,3 +1,5 @@
+"""Model for user-management."""
+
 import secrets
 from hashlib import pbkdf2_hmac
 from typing import Optional
@@ -21,8 +23,11 @@ from ..data_models.base.shepherd import ShpModel
 
 @validate_call
 def hash_password(pw: Annotated[str, StringConstraints(min_length=20, max_length=100)]) -> bytes:
-    # TODO: add salt of testbed -> this fn should be part of Testbed-Object
+    """Generate a hash of a string.
+
     # NOTE: 1M Iterations need 25s on beaglebone
+    # TODO: add salt of testbed -> this fn should be part of Testbed-Object
+    """
     return pbkdf2_hmac(
         "sha512",
         password=pw.encode("utf-8"),
@@ -33,9 +38,9 @@ def hash_password(pw: Annotated[str, StringConstraints(min_length=20, max_length
 
 
 class User(ShpModel):
-    """meta-data representation of a testbed-component (physical object)"""
+    """meta-data representation of a testbed-component (physical object)."""
 
-    # id: UUID4 = Field(  # TODO db-migration - temp fix for documentation
+    # id: UUID4 = Field(  # TODO: db-migration - temp fix for documentation
     id: Union[UUID4, int] = Field(
         description="Unique ID",
         default_factory=uuid4,

shepherd_core/vsource/__init__.py

@@ -1,3 +1,5 @@
+"""Simulation model of the virtual source."""
+
 from .virtual_converter_model import PruCalibration
 from .virtual_converter_model import VirtualConverterModel
 from .virtual_harvester_model import VirtualHarvesterModel

shepherd_core/vsource/virtual_converter_model.py

@@ -1,4 +1,7 @@
-"""this is ported py-version of the pru-code, goals:
+"""This is ported py-version of the pru-code.
+
+Goals:
+
 - stay close to original code-base
 - offer a comparison for the tests
 - step 1 to a virtualization of emulation
@@ -6,6 +9,7 @@
 NOTE: DO NOT OPTIMIZE -> stay close to original code-base
 
 Compromises:
+
 - bitshifted values (i.e. _n28) are converted to float without shift
 
 """
@@ -19,7 +23,7 @@ from ..data_models.content.virtual_source import ConverterPRUConfig
 
 
 class PruCalibration:
-    """part of calibration.h"""
+    """part of calibration.h."""
 
     def __init__(self, cal_emu: Optional[CalibrationEmulator] = None) -> None:
         self.cal = cal_emu if cal_emu else CalibrationEmulator()
@@ -30,7 +34,8 @@ class PruCalibration:
 
     @staticmethod
     def conv_adc_raw_to_uV(voltage_raw: int) -> float:
-        raise RuntimeError(f"This Fn should not been used (val={voltage_raw})")
+        msg = f"This Fn should not been used (val={voltage_raw})"
+        raise RuntimeError(msg)
 
     def conv_uV_to_dac_raw(self, voltage_uV: float) -> int:
         dac_raw = self.cal.dac_V_A.si_to_raw(float(voltage_uV) / (10**6))
@@ -40,6 +45,8 @@ class PruCalibration:
 
 
 class VirtualConverterModel:
+    """Ported python version of the pru vCnv."""
+
     def __init__(self, cfg: ConverterPRUConfig, cal: PruCalibration) -> None:
         self._cal: PruCalibration = cal
         self._cfg: ConverterPRUConfig = cfg

shepherd_core/vsource/virtual_harvester_model.py

@@ -1,4 +1,7 @@
-"""this is ported py-version of the pru-code, goals:
+"""this is ported py-version of the pru-code.
+
+Goals:
+
 - stay close to original code-base
 - offer a comparison for the tests
 - step 1 to a virtualization of emulation
@@ -7,6 +10,7 @@ NOTE1: DO NOT OPTIMIZE -> stay close to original c-code-base
 NOTE2: adc-harvest-routines are not part of this model (virtual_harvester lines 66:289)
 
 Compromises:
+
 - Py has to map the settings-list to internal vars -> is kernel-task
 - Python has no static vars -> FName_reset is handling the class-vars
 
@@ -18,6 +22,8 @@ from ..data_models.content.virtual_harvester import HarvesterPRUConfig
 
 
 class VirtualHarvesterModel:
+    """Ported python version of the pru vHrv."""
+
     HRV_IVCURVE: int = 2**4
     HRV_CV: int = 2**8
     HRV_MPPT_VOC: int = 2**12

shepherd_core/vsource/virtual_source_model.py

@@ -1,7 +1,10 @@
-"""this is ported py-version of the pru-code, goals:
+"""This is ported py-version of the pru-code.
+
+Goals:
+
 - stay close to original code-base
 - offer a comparison for the tests
-- step 1 to a virtualization of emulation
+- step 1 to a virtualization of emulation.
 
 NOTE: DO NOT OPTIMIZE -> stay close to original code-base
 
@@ -20,7 +23,7 @@ from .virtual_harvester_model import VirtualHarvesterModel
 
 
 class VirtualSourceModel:
-    """part of sampling.c"""
+    """part of sampling.c."""
 
     def __init__(
         self,
@@ -53,8 +56,9 @@ class VirtualSourceModel:
         self.W_out_fWs: float = 0.0
 
     def iterate_sampling(self, V_inp_uV: int = 0, I_inp_nA: int = 0, I_out_nA: int = 0) -> int:
-        """TEST-SIMPLIFICATION - code below is not part of pru-code,
-        but in part sample_emulator() in sampling.c
+        """TEST-SIMPLIFICATION - code below is not part of pru-code.
+
+        It originates from sample_emulator() in sampling.c.
 
         :param V_inp_uV:
         :param I_inp_nA:

shepherd_core/writer.py

@@ -1,4 +1,4 @@
-"""Writer that inherits from Reader-Baseclass"""
+"""Writer that inherits from Reader-Baseclass."""
 
 import logging
 import math
@@ -35,10 +35,12 @@ from .reader import Reader
 def path2str(
     dumper: Dumper, data: Union[pathlib.Path, pathlib.WindowsPath, pathlib.PosixPath]
 ) -> ScalarNode:
+    """Add a yaml-representation for a specific datatype."""
     return dumper.represent_scalar("tag:yaml.org,2002:str", str(data.as_posix()))
 
 
 def time2int(dumper: Dumper, data: timedelta) -> ScalarNode:
+    """Add a yaml-representation for a specific datatype."""
     return dumper.represent_scalar("tag:yaml.org,2002:int", str(int(data.total_seconds())))
 
 
@@ -49,7 +51,7 @@ yaml.add_representer(timedelta, time2int, SafeDumper)
 
 
 def unique_path(base_path: Union[str, Path], suffix: str) -> Path:
-    """Finds an unused filename in case it already exists
+    """Find an unused filename in case it already exists.
 
     :param base_path: file-path to test
     :param suffix: file-suffix
@@ -64,7 +66,7 @@ def unique_path(base_path: Union[str, Path], suffix: str) -> Path:
 
 
 class Writer(Reader):
-    """Stores data for Shepherd in HDF5 format
+    """Stores data for Shepherd in HDF5 format.
 
     Choose lossless compression filter
      - lzf:  low to moderate compression, VERY fast, no options
@@ -124,7 +126,8 @@ class Writer(Reader):
             self.file_path: Path = file_path.resolve()
             self._logger.info("Storing data to   '%s'", self.file_path)
         elif file_path.exists() and not file_path.is_file():
-            raise TypeError(f"Path is not a file ({file_path})")
+            msg = f"Path is not a file ({file_path})"
+            raise TypeError(msg)
         else:
             base_dir = file_path.resolve().parents[0]
             self.file_path = unique_path(base_dir / file_path.stem, file_path.suffix)
@@ -135,15 +138,15 @@ class Writer(Reader):
             )
 
         if isinstance(mode, str) and mode not in self.mode_dtype_dict:
-            raise ValueError(f"Can't handle mode '{mode}' (choose one of {self.mode_dtype_dict})")
+            msg = f"Can't handle mode '{mode}' (choose one of {self.mode_dtype_dict})"
+            raise ValueError(msg)
 
-        _dtypes = self.mode_dtype_dict[mode if mode else self.mode_default]
+        _dtypes = self.mode_dtype_dict[mode or self.mode_default]
         if isinstance(datatype, str):
             datatype = EnergyDType[datatype]
         if isinstance(datatype, EnergyDType) and datatype not in _dtypes:
-            raise ValueError(
-                f"Can't handle value '{datatype}' of datatype (choose one of {_dtypes})"
-            )
+            msg = f"Can't handle value '{datatype}' of datatype (choose one of {_dtypes})"
+            raise ValueError(msg)
 
         if self._modify:
             self._mode = mode
@@ -223,10 +226,10 @@ class Writer(Reader):
         self.h5file.close()
 
     def _create_skeleton(self) -> None:
-        """Initializes the structure of the HDF5 file
+        """Initialize the structure of the HDF5 file.
 
         HDF5 is hierarchically structured and before writing data, we have to
-        setup this structure, i.e. creating the right groups with corresponding
+        set up this structure, i.e. creating the right groups with corresponding
         data types. We will store 3 types of data in a database: The
         actual IV samples recorded either from the harvester (during recording)
         or the target (during emulation). Any log messages, that can be used to
@@ -279,7 +282,7 @@ class Writer(Reader):
         voltage: np.ndarray,
         current: np.ndarray,
     ) -> None:
-        """Writes raw data to database
+        """Write raw data to database.
 
         Args:
         ----
@@ -298,7 +301,7 @@ class Writer(Reader):
         if isinstance(timestamp, np.ndarray):
             len_new = min(len_new, timestamp.size)
         else:
-            raise ValueError("timestamp-data was not usable")
+            raise TypeError("timestamp-data was not usable")
 
         len_old = self.ds_voltage.shape[0]
 
@@ -318,7 +321,9 @@ class Writer(Reader):
         voltage: np.ndarray,
         current: np.ndarray,
     ) -> None:
-        """Writes data (in SI / physical unit) to file, but converts it to raw-data first
+        """Write data (provided in SI / physical unit) to file.
+
+        This will convert it to raw-data first.
 
            SI-value [SI-Unit] = raw-value * gain + offset,
 
@@ -336,7 +341,7 @@ class Writer(Reader):
         self.append_iv_data_raw(timestamp, voltage, current)
 
     def _align(self) -> None:
-        """Align datasets with buffer-size of shepherd"""
+        """Align datasets with buffer-size of shepherd."""
         self._refresh_file_stats()
         n_buff = self.ds_voltage.size / self.samples_per_buffer
         size_new = int(math.floor(n_buff) * self.samples_per_buffer)
@@ -353,21 +358,21 @@ class Writer(Reader):
             self.ds_current.resize((size_new,))
 
     def __setitem__(self, key: str, item: Any) -> None:
-        """A convenient interface to store relevant key-value data (attribute) if H5-structure"""
+        """Conveniently store relevant key-value data (attribute) in H5-structure."""
         self.h5file.attrs.__setitem__(key, item)
 
     def store_config(self, data: dict) -> None:
-        """Important Step to get a self-describing Output-File
+        """Get a better self-describing Output-File.
+
         TODO: use data-model?
-        :param data: from virtual harvester or converter / source
+        :param data: from virtual harvester or converter / source.
         """
-        self.h5file["data"].attrs["config"] = yaml.safe_dump(
+        self.h5file.attrs["config"] = yaml.safe_dump(
             data, default_flow_style=False, sort_keys=False
         )
 
     def store_hostname(self, name: str) -> None:
-        """Option to distinguish the host, target or data-source in the testbed
-            -> perfect for plotting later
+        """Option to distinguish the host, target or data-source -> perfect for plotting later.
 
         :param name: something unique, or "artificial" in case of generated content
         """

{shepherd_core-2024.4.1.dist-info → shepherd_core-2024.5.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: shepherd_core
-Version: 2024.4.1
+Version: 2024.5.1
 Summary: Programming- and CLI-Interface for the h5-dataformat of the Shepherd-Testbed
 Author-email: Ingmar Splitt <ingmar.splitt@tu-dresden.de>
 Maintainer-email: Ingmar Splitt <ingmar.splitt@tu-dresden.de>
@@ -39,6 +39,7 @@ Requires-Dist: intelhex
 Requires-Dist: requests
 Requires-Dist: pyelftools
 Requires-Dist: zstandard
+Requires-Dist: typing-extensions
 Provides-Extra: dev
 Requires-Dist: twine ; extra == 'dev'
 Requires-Dist: pre-commit ; extra == 'dev'

shepherd_core-2024.5.1.dist-info/RECORD

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