shepherd-core 2023.11.1__py3-none-any.whl → 2024.4.1__py3-none-any.whl

shepherd_core/writer.py

@@ -1,5 +1,5 @@
-"""Writer that inherits from Reader-Baseclass
-"""
+"""Writer that inherits from Reader-Baseclass"""
+
 import logging
 import math
 import pathlib
@@ -39,9 +39,7 @@ def path2str(
 
 
 def time2int(dumper: Dumper, data: timedelta) -> ScalarNode:
-    return dumper.represent_scalar(
-        "tag:yaml.org,2002:int", str(int(data.total_seconds()))
-    )
+    return dumper.represent_scalar("tag:yaml.org,2002:int", str(int(data.total_seconds())))
 
 
 yaml.add_representer(pathlib.PosixPath, path2str, SafeDumper)
@@ -89,6 +87,7 @@ class Writer(Reader):
             otherwise a unique name will be found
         compression: (str) use either None, lzf or "1" (gzips compression level)
         verbose: (bool) provides more debug-info
+
     """
 
     comp_default: int = 1
@@ -130,23 +129,20 @@ class Writer(Reader):
             base_dir = file_path.resolve().parents[0]
             self.file_path = unique_path(base_dir / file_path.stem, file_path.suffix)
             self._logger.warning(
-                "File '%s' already exists -> " "storing under '%s' instead",
+                "File '%s' already exists -> storing under '%s' instead",
                 file_path,
                 self.file_path.name,
             )
 
         if isinstance(mode, str) and mode not in self.mode_dtype_dict:
-            raise ValueError(
-                f"Can't handle mode '{mode}' " f"(choose one of {self.mode_dtype_dict})"
-            )
+            raise ValueError(f"Can't handle mode '{mode}' (choose one of {self.mode_dtype_dict})")
 
         _dtypes = self.mode_dtype_dict[mode if mode else self.mode_default]
         if isinstance(datatype, str):
             datatype = EnergyDType[datatype]
         if isinstance(datatype, EnergyDType) and datatype not in _dtypes:
             raise ValueError(
-                f"Can't handle value '{datatype}' of datatype "
-                f"(choose one of {_dtypes})"
+                f"Can't handle value '{datatype}' of datatype (choose one of {_dtypes})"
             )
 
         if self._modify:
@@ -158,9 +154,7 @@ class Writer(Reader):
             self._datatype = (
                 datatype if isinstance(datatype, EnergyDType) else self.datatype_default
             )
-            self._window_samples = (
-                window_samples if isinstance(window_samples, int) else 0
-            )
+            self._window_samples = window_samples if isinstance(window_samples, int) else 0
 
         if isinstance(cal_data, (CalEmu, CalHrv)):
             self._cal = CalSeries.from_cal(cal_data)
@@ -181,9 +175,7 @@ class Writer(Reader):
 
         # show key parameters for h5-performance
         settings = list(self.h5file.id.get_access_plist().get_cache())
-        self._logger.debug(
-            "H5Py Cache_setting=%s (_mdc, _nslots, _nbytes, _w0)", settings
-        )
+        self._logger.debug("H5Py Cache_setting=%s (_mdc, _nslots, _nbytes, _w0)", settings)
 
         # Store the mode in order to allow user to differentiate harvesting vs emulation data
         if isinstance(self._mode, str) and self._mode in self.mode_dtype_dict:
@@ -257,9 +249,7 @@ class Writer(Reader):
             compression=self._compression,
         )
         grp_data["time"].attrs["unit"] = "s"
-        grp_data["time"].attrs[
-            "description"
-        ] = "system time [s] = value * gain + (offset)"
+        grp_data["time"].attrs["description"] = "system time [s] = value * gain + (offset)"
 
         grp_data.create_dataset(
             "current",
@@ -296,6 +286,7 @@ class Writer(Reader):
             timestamp: just start of buffer or whole ndarray
             voltage: ndarray as raw unsigned integers
             current: ndarray as raw unsigned integers
+
         """
         len_new = min(voltage.size, current.size)
 
@@ -309,7 +300,7 @@ class Writer(Reader):
         else:
             raise ValueError("timestamp-data was not usable")
 
-        len_old = self.ds_time.shape[0]
+        len_old = self.ds_voltage.shape[0]
 
         # resize dataset
         self.ds_time.resize((len_old + len_new,))
@@ -337,6 +328,7 @@ class Writer(Reader):
                        -> provide start of buffer or whole ndarray
             voltage: ndarray in physical-unit V
             current: ndarray in physical-unit A
+
         """
         timestamp = self._cal.time.si_to_raw(timestamp)
         voltage = self._cal.voltage.si_to_raw(voltage)
@@ -346,15 +338,15 @@ class Writer(Reader):
     def _align(self) -> None:
         """Align datasets with buffer-size of shepherd"""
         self._refresh_file_stats()
-        n_buff = self.ds_time.size / self.samples_per_buffer
+        n_buff = self.ds_voltage.size / self.samples_per_buffer
         size_new = int(math.floor(n_buff) * self.samples_per_buffer)
-        if size_new < self.ds_time.size:
+        if size_new < self.ds_voltage.size:
             if self.samplerate_sps != samplerate_sps_default:
                 self._logger.debug("skipped alignment due to altered samplerate")
                 return
             self._logger.info(
                 "aligning with buffer-size, discarding last %d entries",
-                self.ds_time.size - size_new,
+                self.ds_voltage.size - size_new,
             )
             self.ds_time.resize((size_new,))
             self.ds_voltage.resize((size_new,))

{shepherd_core-2023.11.1.dist-info → shepherd_core-2024.4.1.dist-info}/METADATA

@@ -1,14 +1,12 @@
 Metadata-Version: 2.1
-Name: shepherd-core
-Version: 2023.11.1
+Name: shepherd_core
+Version: 2024.4.1
 Summary: Programming- and CLI-Interface for the h5-dataformat of the Shepherd-Testbed
-Home-page: https://pypi.org/project/shepherd-core/
-Author: Ingmar Splitt, Kai Geissdoerfer
-Author-email: ingmar.splitt@tu-dresden.de
-Maintainer-email: ingmar.splitt@tu-dresden.de
-License: MIT
-Project-URL: Tracker, https://github.com/orgua/shepherd-datalib/issues
-Project-URL: Source, https://github.com/orgua/shepherd-datalib
+Author-email: Ingmar Splitt <ingmar.splitt@tu-dresden.de>
+Maintainer-email: Ingmar Splitt <ingmar.splitt@tu-dresden.de>
+Project-URL: Documentation, https://github.com/orgua/shepherd-datalib/blob/main/README.md
+Project-URL: Issues, https://github.com/orgua/shepherd-datalib/issues
+Project-URL: Source, https://pypi.org/project/shepherd-core/
 Keywords: testbed,beaglebone,pru,batteryless,energyharvesting,solar
 Platform: unix
 Platform: linux
@@ -35,16 +33,13 @@ Requires-Dist: numpy
 Requires-Dist: pyYAML
 Requires-Dist: chromalog
 Requires-Dist: pydantic[email] >2.0.0
-Requires-Dist: tqdm
 Requires-Dist: scipy
+Requires-Dist: tqdm
 Requires-Dist: intelhex
 Requires-Dist: requests
 Requires-Dist: pyelftools
 Requires-Dist: zstandard
 Provides-Extra: dev
-Requires-Dist: black ; extra == 'dev'
-Requires-Dist: pylint ; extra == 'dev'
-Requires-Dist: flake8 ; extra == 'dev'
 Requires-Dist: twine ; extra == 'dev'
 Requires-Dist: pre-commit ; extra == 'dev'
 Requires-Dist: pyright ; extra == 'dev'
@@ -64,9 +59,9 @@ Requires-Dist: coverage ; extra == 'test'
 [![PyPiVersion](https://img.shields.io/pypi/v/shepherd_core.svg)](https://pypi.org/project/shepherd_core)
 [![image](https://img.shields.io/pypi/pyversions/shepherd_core.svg)](https://pypi.python.org/pypi/shepherd-core)
 [![Pytest](https://github.com/orgua/shepherd-datalib/actions/workflows/py_unittest.yml/badge.svg)](https://github.com/orgua/shepherd-datalib/actions/workflows/py_unittest.yml)
-[![CodeStyle](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
+[![CodeStyle](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
 
-**Documentation**: <https://orgua.github.io/shepherd/external/shepherd_core.html>
+**Main Documentation**: <https://orgua.github.io/shepherd>
 
 **Source Code**: <https://github.com/orgua/shepherd-datalib>
 
@@ -74,53 +69,42 @@ Requires-Dist: coverage ; extra == 'test'
 
 ---
 
-This Python Module is designed as a library and bundles data-models and file-access-routines for the shepherd-testbed, that are used by several codebases.
+`shepherd-core` is designed as a library and bundles data-models and file-access-routines for the shepherd-testbed, that are used by several codebases.
 
-For postprocessing shepherds .h5-files users want to use [shepherd_data](https://pypi.org/project/shepherd_data).
+For postprocessing shepherds .h5-files usage of [shepherd_data](https://pypi.org/project/shepherd_data) is recommended.
 
 ## Features
 
 - read and write shepherds hdf5-files
-- create, read, write and convert experiments for the testbed (all data-models included)
+- create, read, write and convert experiments for the testbed
+  - all required data-models are included
 - simulate the virtual source, including virtual harvesters (and virtual converter as a whole)
-- connect and query the testbed via a webclient (TestbedClient)
+- connect and query the testbed via a webclient (TestbedClient in alpha-stage)
   - offline usage defaults to static demo-fixtures loaded from yaml-files in the model-directories
 - work with target-firmwares
   - embed, modify, verify, convert
   - **Note**: working with ELF-files requires external dependencies, see ``Installation``-Chapter
 - decode waveforms (gpio-state & timestamp) to UART
-- create an inventory (used versions of software, hardware)
+- create an inventory (for deployed versions of software, hardware)
 
-See [examples](https://github.com/orgua/shepherd-datalib/tree/main/shepherd_core/examples) for more details and usage. Most functionality is showcased there. The [extra](https://github.com/orgua/shepherd-datalib/tree/main/shepherd_core/extra)-directory holds data-generators relevant for the testbed. Notably is a trafficbench-experiment that's used to derive the link-matrix.
+See [official documentation](https://orgua.github.io/shepherd) or [example scripts](https://github.com/orgua/shepherd-datalib/tree/main/shepherd_core/examples) for more details and usage. Most functionality is showcased in both. The [extra](https://github.com/orgua/shepherd-datalib/tree/main/shepherd_core/extra)-directory holds data-generators relevant for the testbed. Notably is a [trafficbench](https://github.com/orgua/TrafficBench)-experiment that's used to derive the link-matrix of the testbed-nodes.
 
-### Compatibility
+## Config-Models in Detail
 
-| OS      |   PyVersion  | Comment                                    |
-|---------|--------------|--------------------------------------------|
-| Ubuntu  | 3.8 - 3.12   |                                            |
-| Windows | 3.8 - 3.12   | no support for elf and hex-conversions yet |
-| MacOS   | 3.8 - 3.12   | hex-conversion missing                     |
+These pydantic data-models are used throughout all shepherd interfaces. Users can create an experiment, include their own content and feed it to the testbed.
 
-Notes:
-- hex-conversion needs a working and accessible objcopy
-- elf-supports needs
-  - ``shepherd-core[elf]`` installs ``pwntools-elf-only``
-  - most elf-features also still utilize hex-conversion
-
-### Data-Models in Detail
-
-- new orchestration ``/data-models`` with focus on remote shepherd-testbed
+- orchestration ``/data-models`` with focus on remote shepherd-testbed
 - classes of sub-models
   - ``/base``: base-classes, configuration and -functionality for all models
   - ``/testbed``: meta-data representation of all testbed-components
-  - ``/content``: reusable meta-data for fw, h5 and vsrc-definitions
+  - ``/content``: reusable user-defined meta-data for fw, h5 and vsrc-definitions
   - ``/experiment``: configuration-models including sub-systems
   - ``/task``: digestible configs for shepherd-herd or -sheep
   - behavior controlled by ``ShpModel`` and ``content``-model
 - a basic database is available as fixtures through a ``tb_client``
   - fixtures selectable by name & ID
   - fixtures support inheritance
-- models support
+- the models support
   - auto-completion with neutral / sensible values
   - complex and custom datatypes (i.e. PositiveInt, lists-checks on length)
   - checking of inputs and type-casting
@@ -133,6 +117,20 @@ Notes:
   - exposes no internal paths
 - experiments can be transformed to task-sets (``TestbedTasks.from_xp()``)
 
+## Compatibility
+
+| OS      |   PyVersion  | Comment                                    |
+|---------|--------------|--------------------------------------------|
+| Ubuntu  | 3.8 - 3.12   |                                            |
+| Windows | 3.8 - 3.12   | no support for elf and hex-conversions yet |
+| MacOS   | 3.8 - 3.12   | hex-conversion missing                     |
+
+Notes:
+- hex-conversion needs a working and accessible objcopy
+- elf-supports needs
+  - ``shepherd-core[elf]`` installs ``pwntools-elf-only``
+  - most elf-features also still utilize hex-conversion
+
 ## Installation
 
 The Library is available via PyPI and can be installed with
@@ -169,3 +167,17 @@ For creating an inventory of the host-system you should install
 ```shell
   pip install shepherd-core[inventory]
 ```
+
+## Unittests
+
+To run the testbench, follow these steps:
+
+1. Navigate your host-shell into the package-folder and
+2. install dependencies
+3. run the testbench (~ 320 tests):
+
+```Shell
+cd shepherd-datalib/shepherd_core
+pip3 install ./[tests]
+pytest
+```

shepherd_core-2024.4.1.dist-info/RECORD

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{shepherd_core-2023.11.1.dist-info → shepherd_core-2024.4.1.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.41.3)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

{shepherd_core-2023.11.1.dist-info → shepherd_core-2024.4.1.dist-info}/top_level.txt

@@ -1,2 +1 @@
 shepherd_core
-tests