sequenzo 0.1.20__cp39-cp39-win_amd64.whl → 0.1.22__cp39-cp39-win_amd64.whl
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- sequenzo/big_data/clara/utils/get_weighted_diss.c +195 -195
- sequenzo/big_data/clara/utils/get_weighted_diss.cp39-win_amd64.pyd +0 -0
- sequenzo/clustering/clustering_c_code.cp39-win_amd64.pyd +0 -0
- sequenzo/clustering/hierarchical_clustering.py +1 -1
- sequenzo/define_sequence_data.py +4 -4
- sequenzo/dissimilarity_measures/c_code.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +172 -173
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.c +234 -234
- sequenzo/dissimilarity_measures/utils/seqconc.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.c +327 -327
- sequenzo/dissimilarity_measures/utils/seqdss.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.c +327 -327
- sequenzo/dissimilarity_measures/utils/seqdur.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.c +227 -226
- sequenzo/dissimilarity_measures/utils/seqlength.cp39-win_amd64.pyd +0 -0
- sequenzo/multidomain/association_between_domains.py +1 -1
- sequenzo/multidomain/combt.py +4 -4
- sequenzo/multidomain/linked_polyad.py +3 -3
- sequenzo/prefix_tree/__init__.py +1 -1
- sequenzo/prefix_tree/individual_level_indicators.py +2 -2
- sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +2 -2
- sequenzo/sequence_characteristics/plot_characteristics.py +2 -2
- sequenzo/sequence_characteristics/simple_characteristics.py +2 -2
- sequenzo/suffix_tree/__init__.py +1 -1
- sequenzo/suffix_tree/individual_level_indicators.py +3 -3
- sequenzo/visualization/plot_single_medoid.py +2 -2
- sequenzo/visualization/plot_transition_matrix.py +3 -2
- sequenzo/visualization/utils/utils.py +2 -2
- sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +1 -1
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/METADATA +17 -43
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/RECORD +35 -41
- sequenzo/big_data/clara/utils/get_weighted_diss.pyx +0 -16
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.pyx +0 -95
- sequenzo/dissimilarity_measures/utils/seqconc.pyx +0 -26
- sequenzo/dissimilarity_measures/utils/seqdss.pyx +0 -33
- sequenzo/dissimilarity_measures/utils/seqdur.pyx +0 -34
- sequenzo/dissimilarity_measures/utils/seqlength.pyx +0 -19
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/WHEEL +0 -0
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/licenses/LICENSE +0 -0
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/top_level.txt +0 -0
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@@ -1742,7 +1741,7 @@ typedef npy_double __pyx_t_5numpy_float_t;
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*/
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typedef npy_double __pyx_t_5numpy_double_t;
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":800
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* ctypedef npy_double float_t
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* ctypedef npy_double double_t
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* ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
|
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@@ -1791,7 +1790,7 @@ static CYTHON_INLINE __pyx_t_long_double_complex __pyx_t_long_double_complex_fro
|
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/*--- Type declarations ---*/
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1096
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*
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* # Iterator API added in v1.6
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* ctypedef int (*NpyIter_IterNextFunc)(NpyIter* it) noexcept nogil # <<<<<<<<<<<<<<
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@@ -1800,7 +1799,7 @@ static CYTHON_INLINE __pyx_t_long_double_complex __pyx_t_long_double_complex_fro
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*/
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typedef int (*__pyx_t_5numpy_NpyIter_IterNextFunc)(NpyIter *);
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1097
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* # Iterator API added in v1.6
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* ctypedef int (*NpyIter_IterNextFunc)(NpyIter* it) noexcept nogil
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* ctypedef void (*NpyIter_GetMultiIndexFunc)(NpyIter* it, npy_intp* outcoords) noexcept nogil # <<<<<<<<<<<<<<
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@@ -3019,7 +3018,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
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#endif
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/* #### Code section: module_code ### */
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":285
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* cdef int type_num
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*
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* @property # <<<<<<<<<<<<<<
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@@ -3030,7 +3029,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
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static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_Descr *__pyx_v_self) {
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npy_intp __pyx_r;
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":287
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* @property
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* cdef inline npy_intp itemsize(self) noexcept nogil:
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* return PyDataType_ELSIZE(self) # <<<<<<<<<<<<<<
|
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@@ -3040,7 +3039,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
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|
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|
__pyx_r = PyDataType_ELSIZE(__pyx_v_self);
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goto __pyx_L0;
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":285
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* cdef int type_num
|
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*
|
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* @property # <<<<<<<<<<<<<<
|
|
@@ -3053,7 +3052,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
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|
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|
return __pyx_r;
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}
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
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* return PyDataType_ELSIZE(self)
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|
*
|
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3058
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3064,7 +3063,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3064
3063
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray_Descr *__pyx_v_self) {
|
|
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|
npy_intp __pyx_r;
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":291
|
|
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|
* @property
|
|
3069
3068
|
* cdef inline npy_intp alignment(self) noexcept nogil:
|
|
3070
3069
|
* return PyDataType_ALIGNMENT(self) # <<<<<<<<<<<<<<
|
|
@@ -3074,7 +3073,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
|
|
|
3074
3073
|
__pyx_r = PyDataType_ALIGNMENT(__pyx_v_self);
|
|
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3074
|
goto __pyx_L0;
|
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3075
|
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
|
|
3078
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|
* return PyDataType_ELSIZE(self)
|
|
3079
3078
|
*
|
|
3080
3079
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3087,7 +3086,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
|
|
|
3087
3086
|
return __pyx_r;
|
|
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3087
|
}
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":295
|
|
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3090
|
* # Use fields/names with care as they may be NULL. You must check
|
|
3092
3091
|
* # for this using PyDataType_HASFIELDS.
|
|
3093
3092
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3101,7 +3100,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
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|
PyObject *__pyx_t_1;
|
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__Pyx_RefNannySetupContext("fields", 0);
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":297
|
|
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|
* @property
|
|
3106
3105
|
* cdef inline object fields(self):
|
|
3107
3106
|
* return <object>PyDataType_FIELDS(self) # <<<<<<<<<<<<<<
|
|
@@ -3114,7 +3113,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3114
3113
|
__pyx_r = ((PyObject *)__pyx_t_1);
|
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3114
|
goto __pyx_L0;
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3115
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":295
|
|
3118
3117
|
* # Use fields/names with care as they may be NULL. You must check
|
|
3119
3118
|
* # for this using PyDataType_HASFIELDS.
|
|
3120
3119
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3129,7 +3128,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
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|
|
3129
3128
|
return __pyx_r;
|
|
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3129
|
}
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":299
|
|
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|
* return <object>PyDataType_FIELDS(self)
|
|
3134
3133
|
*
|
|
3135
3134
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3143,7 +3142,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3143
3142
|
PyObject *__pyx_t_1;
|
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|
__Pyx_RefNannySetupContext("names", 0);
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|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":301
|
|
3147
3146
|
* @property
|
|
3148
3147
|
* cdef inline tuple names(self):
|
|
3149
3148
|
* return <tuple>PyDataType_NAMES(self) # <<<<<<<<<<<<<<
|
|
@@ -3156,7 +3155,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3156
3155
|
__pyx_r = ((PyObject*)__pyx_t_1);
|
|
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3156
|
goto __pyx_L0;
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
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|
|
3160
3159
|
* return <object>PyDataType_FIELDS(self)
|
|
3161
3160
|
*
|
|
3162
3161
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3171,7 +3170,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3171
3170
|
return __pyx_r;
|
|
3172
3171
|
}
|
|
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3172
|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":306
|
|
3175
3174
|
* # valid (the pointer can be NULL). Most users should access
|
|
3176
3175
|
* # this field via the inline helper method PyDataType_SHAPE.
|
|
3177
3176
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3182,7 +3181,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3182
3181
|
static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarray(PyArray_Descr *__pyx_v_self) {
|
|
3183
3182
|
PyArray_ArrayDescr *__pyx_r;
|
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|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":308
|
|
3186
3185
|
* @property
|
|
3187
3186
|
* cdef inline PyArray_ArrayDescr* subarray(self) noexcept nogil:
|
|
3188
3187
|
* return PyDataType_SUBARRAY(self) # <<<<<<<<<<<<<<
|
|
@@ -3192,7 +3191,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3192
3191
|
__pyx_r = PyDataType_SUBARRAY(__pyx_v_self);
|
|
3193
3192
|
goto __pyx_L0;
|
|
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3193
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":306
|
|
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3195
|
* # valid (the pointer can be NULL). Most users should access
|
|
3197
3196
|
* # this field via the inline helper method PyDataType_SHAPE.
|
|
3198
3197
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3205,7 +3204,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3205
3204
|
return __pyx_r;
|
|
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3205
|
}
|
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3206
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3207
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":310
|
|
3209
3208
|
* return PyDataType_SUBARRAY(self)
|
|
3210
3209
|
*
|
|
3211
3210
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3216,7 +3215,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3216
3215
|
static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr *__pyx_v_self) {
|
|
3217
3216
|
npy_uint64 __pyx_r;
|
|
3218
3217
|
|
|
3219
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":313
|
|
3220
3219
|
* cdef inline npy_uint64 flags(self) noexcept nogil:
|
|
3221
3220
|
* """The data types flags."""
|
|
3222
3221
|
* return PyDataType_FLAGS(self) # <<<<<<<<<<<<<<
|
|
@@ -3226,7 +3225,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3226
3225
|
__pyx_r = PyDataType_FLAGS(__pyx_v_self);
|
|
3227
3226
|
goto __pyx_L0;
|
|
3228
3227
|
|
|
3229
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3228
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":310
|
|
3230
3229
|
* return PyDataType_SUBARRAY(self)
|
|
3231
3230
|
*
|
|
3232
3231
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3239,7 +3238,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3239
3238
|
return __pyx_r;
|
|
3240
3239
|
}
|
|
3241
3240
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3241
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
|
|
3243
3242
|
* ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
|
|
3244
3243
|
*
|
|
3245
3244
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3250,7 +3249,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3250
3249
|
static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3251
3250
|
int __pyx_r;
|
|
3252
3251
|
|
|
3253
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3252
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":325
|
|
3254
3253
|
* cdef inline int numiter(self) noexcept nogil:
|
|
3255
3254
|
* """The number of arrays that need to be broadcast to the same shape."""
|
|
3256
3255
|
* return PyArray_MultiIter_NUMITER(self) # <<<<<<<<<<<<<<
|
|
@@ -3260,7 +3259,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3260
3259
|
__pyx_r = PyArray_MultiIter_NUMITER(__pyx_v_self);
|
|
3261
3260
|
goto __pyx_L0;
|
|
3262
3261
|
|
|
3263
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3262
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
|
|
3264
3263
|
* ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
|
|
3265
3264
|
*
|
|
3266
3265
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3273,7 +3272,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3273
3272
|
return __pyx_r;
|
|
3274
3273
|
}
|
|
3275
3274
|
|
|
3276
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3275
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":327
|
|
3277
3276
|
* return PyArray_MultiIter_NUMITER(self)
|
|
3278
3277
|
*
|
|
3279
3278
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3284,7 +3283,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3284
3283
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3285
3284
|
npy_intp __pyx_r;
|
|
3286
3285
|
|
|
3287
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3286
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":330
|
|
3288
3287
|
* cdef inline npy_intp size(self) noexcept nogil:
|
|
3289
3288
|
* """The total broadcasted size."""
|
|
3290
3289
|
* return PyArray_MultiIter_SIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3294,7 +3293,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3294
3293
|
__pyx_r = PyArray_MultiIter_SIZE(__pyx_v_self);
|
|
3295
3294
|
goto __pyx_L0;
|
|
3296
3295
|
|
|
3297
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3296
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":327
|
|
3298
3297
|
* return PyArray_MultiIter_NUMITER(self)
|
|
3299
3298
|
*
|
|
3300
3299
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3307,7 +3306,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3307
3306
|
return __pyx_r;
|
|
3308
3307
|
}
|
|
3309
3308
|
|
|
3310
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3309
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":332
|
|
3311
3310
|
* return PyArray_MultiIter_SIZE(self)
|
|
3312
3311
|
*
|
|
3313
3312
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3318,7 +3317,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3318
3317
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3319
3318
|
npy_intp __pyx_r;
|
|
3320
3319
|
|
|
3321
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3320
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":335
|
|
3322
3321
|
* cdef inline npy_intp index(self) noexcept nogil:
|
|
3323
3322
|
* """The current (1-d) index into the broadcasted result."""
|
|
3324
3323
|
* return PyArray_MultiIter_INDEX(self) # <<<<<<<<<<<<<<
|
|
@@ -3328,7 +3327,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3328
3327
|
__pyx_r = PyArray_MultiIter_INDEX(__pyx_v_self);
|
|
3329
3328
|
goto __pyx_L0;
|
|
3330
3329
|
|
|
3331
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3330
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":332
|
|
3332
3331
|
* return PyArray_MultiIter_SIZE(self)
|
|
3333
3332
|
*
|
|
3334
3333
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3341,7 +3340,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3341
3340
|
return __pyx_r;
|
|
3342
3341
|
}
|
|
3343
3342
|
|
|
3344
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3343
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":337
|
|
3345
3344
|
* return PyArray_MultiIter_INDEX(self)
|
|
3346
3345
|
*
|
|
3347
3346
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3352,7 +3351,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3352
3351
|
static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3353
3352
|
int __pyx_r;
|
|
3354
3353
|
|
|
3355
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3354
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":340
|
|
3356
3355
|
* cdef inline int nd(self) noexcept nogil:
|
|
3357
3356
|
* """The number of dimensions in the broadcasted result."""
|
|
3358
3357
|
* return PyArray_MultiIter_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -3362,7 +3361,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3362
3361
|
__pyx_r = PyArray_MultiIter_NDIM(__pyx_v_self);
|
|
3363
3362
|
goto __pyx_L0;
|
|
3364
3363
|
|
|
3365
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3364
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":337
|
|
3366
3365
|
* return PyArray_MultiIter_INDEX(self)
|
|
3367
3366
|
*
|
|
3368
3367
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3375,7 +3374,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3375
3374
|
return __pyx_r;
|
|
3376
3375
|
}
|
|
3377
3376
|
|
|
3378
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3377
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":342
|
|
3379
3378
|
* return PyArray_MultiIter_NDIM(self)
|
|
3380
3379
|
*
|
|
3381
3380
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3386,7 +3385,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3386
3385
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3387
3386
|
npy_intp *__pyx_r;
|
|
3388
3387
|
|
|
3389
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3388
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":345
|
|
3390
3389
|
* cdef inline npy_intp* dimensions(self) noexcept nogil:
|
|
3391
3390
|
* """The shape of the broadcasted result."""
|
|
3392
3391
|
* return PyArray_MultiIter_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -3396,7 +3395,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3396
3395
|
__pyx_r = PyArray_MultiIter_DIMS(__pyx_v_self);
|
|
3397
3396
|
goto __pyx_L0;
|
|
3398
3397
|
|
|
3399
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3398
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":342
|
|
3400
3399
|
* return PyArray_MultiIter_NDIM(self)
|
|
3401
3400
|
*
|
|
3402
3401
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3409,7 +3408,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3409
3408
|
return __pyx_r;
|
|
3410
3409
|
}
|
|
3411
3410
|
|
|
3412
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3411
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":347
|
|
3413
3412
|
* return PyArray_MultiIter_DIMS(self)
|
|
3414
3413
|
*
|
|
3415
3414
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3420,7 +3419,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3420
3419
|
static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3421
3420
|
void **__pyx_r;
|
|
3422
3421
|
|
|
3423
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3422
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":351
|
|
3424
3423
|
* """An array of iterator objects that holds the iterators for the arrays to be broadcast together.
|
|
3425
3424
|
* On return, the iterators are adjusted for broadcasting."""
|
|
3426
3425
|
* return PyArray_MultiIter_ITERS(self) # <<<<<<<<<<<<<<
|
|
@@ -3430,7 +3429,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3430
3429
|
__pyx_r = PyArray_MultiIter_ITERS(__pyx_v_self);
|
|
3431
3430
|
goto __pyx_L0;
|
|
3432
3431
|
|
|
3433
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3432
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":347
|
|
3434
3433
|
* return PyArray_MultiIter_DIMS(self)
|
|
3435
3434
|
*
|
|
3436
3435
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3443,7 +3442,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3443
3442
|
return __pyx_r;
|
|
3444
3443
|
}
|
|
3445
3444
|
|
|
3446
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3445
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":365
|
|
3447
3446
|
* # Instead, we use properties that map to the corresponding C-API functions.
|
|
3448
3447
|
*
|
|
3449
3448
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3454,7 +3453,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3454
3453
|
static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject *__pyx_v_self) {
|
|
3455
3454
|
PyObject *__pyx_r;
|
|
3456
3455
|
|
|
3457
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3456
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":369
|
|
3458
3457
|
* """Returns a borrowed reference to the object owning the data/memory.
|
|
3459
3458
|
* """
|
|
3460
3459
|
* return PyArray_BASE(self) # <<<<<<<<<<<<<<
|
|
@@ -3464,7 +3463,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
3464
3463
|
__pyx_r = PyArray_BASE(__pyx_v_self);
|
|
3465
3464
|
goto __pyx_L0;
|
|
3466
3465
|
|
|
3467
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3466
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":365
|
|
3468
3467
|
* # Instead, we use properties that map to the corresponding C-API functions.
|
|
3469
3468
|
*
|
|
3470
3469
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3477,7 +3476,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
3477
3476
|
return __pyx_r;
|
|
3478
3477
|
}
|
|
3479
3478
|
|
|
3480
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3479
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":371
|
|
3481
3480
|
* return PyArray_BASE(self)
|
|
3482
3481
|
*
|
|
3483
3482
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3491,7 +3490,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3491
3490
|
PyArray_Descr *__pyx_t_1;
|
|
3492
3491
|
__Pyx_RefNannySetupContext("descr", 0);
|
|
3493
3492
|
|
|
3494
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3493
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":375
|
|
3495
3494
|
* """Returns an owned reference to the dtype of the array.
|
|
3496
3495
|
* """
|
|
3497
3496
|
* return <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
|
|
@@ -3504,7 +3503,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3504
3503
|
__pyx_r = ((PyArray_Descr *)__pyx_t_1);
|
|
3505
3504
|
goto __pyx_L0;
|
|
3506
3505
|
|
|
3507
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3506
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":371
|
|
3508
3507
|
* return PyArray_BASE(self)
|
|
3509
3508
|
*
|
|
3510
3509
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3519,7 +3518,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3519
3518
|
return __pyx_r;
|
|
3520
3519
|
}
|
|
3521
3520
|
|
|
3522
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3521
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":377
|
|
3523
3522
|
* return <dtype>PyArray_DESCR(self)
|
|
3524
3523
|
*
|
|
3525
3524
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3530,7 +3529,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3530
3529
|
static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx_v_self) {
|
|
3531
3530
|
int __pyx_r;
|
|
3532
3531
|
|
|
3533
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3532
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":381
|
|
3534
3533
|
* """Returns the number of dimensions in the array.
|
|
3535
3534
|
* """
|
|
3536
3535
|
* return PyArray_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -3540,7 +3539,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3540
3539
|
__pyx_r = PyArray_NDIM(__pyx_v_self);
|
|
3541
3540
|
goto __pyx_L0;
|
|
3542
3541
|
|
|
3543
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3542
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":377
|
|
3544
3543
|
* return <dtype>PyArray_DESCR(self)
|
|
3545
3544
|
*
|
|
3546
3545
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3553,7 +3552,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3553
3552
|
return __pyx_r;
|
|
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|
}
|
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|
|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":383
|
|
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|
* return PyArray_NDIM(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3564,7 +3563,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
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3563
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObject *__pyx_v_self) {
|
|
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|
npy_intp *__pyx_r;
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":389
|
|
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|
* Can return NULL for 0-dimensional arrays.
|
|
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|
* """
|
|
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|
* return PyArray_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -3574,7 +3573,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
3574
3573
|
__pyx_r = PyArray_DIMS(__pyx_v_self);
|
|
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|
goto __pyx_L0;
|
|
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|
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":383
|
|
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|
* return PyArray_NDIM(self)
|
|
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3578
|
*
|
|
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3579
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3587,7 +3586,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
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3586
|
return __pyx_r;
|
|
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|
}
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":391
|
|
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|
* return PyArray_DIMS(self)
|
|
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3591
|
*
|
|
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3592
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3598,7 +3597,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
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3597
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayObject *__pyx_v_self) {
|
|
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|
npy_intp *__pyx_r;
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":396
|
|
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|
* The number of elements matches the number of dimensions of the array (ndim).
|
|
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3602
|
* """
|
|
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3603
|
* return PyArray_STRIDES(self) # <<<<<<<<<<<<<<
|
|
@@ -3608,7 +3607,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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3607
|
__pyx_r = PyArray_STRIDES(__pyx_v_self);
|
|
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3608
|
goto __pyx_L0;
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":391
|
|
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3611
|
* return PyArray_DIMS(self)
|
|
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3612
|
*
|
|
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3613
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3621,7 +3620,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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3620
|
return __pyx_r;
|
|
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|
}
|
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|
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":398
|
|
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3624
|
* return PyArray_STRIDES(self)
|
|
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3625
|
*
|
|
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3626
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3632,7 +3631,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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3631
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *__pyx_v_self) {
|
|
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3632
|
npy_intp __pyx_r;
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":402
|
|
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|
* """Returns the total size (in number of elements) of the array.
|
|
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3636
|
* """
|
|
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3637
|
* return PyArray_SIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3642,7 +3641,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
3642
3641
|
__pyx_r = PyArray_SIZE(__pyx_v_self);
|
|
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3642
|
goto __pyx_L0;
|
|
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3643
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":398
|
|
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3645
|
* return PyArray_STRIDES(self)
|
|
3647
3646
|
*
|
|
3648
3647
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3655,7 +3654,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
3655
3654
|
return __pyx_r;
|
|
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3655
|
}
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":404
|
|
3659
3658
|
* return PyArray_SIZE(self)
|
|
3660
3659
|
*
|
|
3661
3660
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3666,7 +3665,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
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3665
|
static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__pyx_v_self) {
|
|
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|
char *__pyx_r;
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":411
|
|
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|
* of `PyArray_DATA()` instead, which returns a 'void*'.
|
|
3671
3670
|
* """
|
|
3672
3671
|
* return PyArray_BYTES(self) # <<<<<<<<<<<<<<
|
|
@@ -3676,7 +3675,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
3676
3675
|
__pyx_r = PyArray_BYTES(__pyx_v_self);
|
|
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3676
|
goto __pyx_L0;
|
|
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3677
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":404
|
|
3680
3679
|
* return PyArray_SIZE(self)
|
|
3681
3680
|
*
|
|
3682
3681
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3689,7 +3688,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
3689
3688
|
return __pyx_r;
|
|
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|
}
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":807
|
|
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3692
|
* ctypedef long double complex clongdouble_t
|
|
3694
3693
|
*
|
|
3695
3694
|
* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
|
|
@@ -3706,7 +3705,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
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3705
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":808
|
|
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3709
|
*
|
|
3711
3710
|
* cdef inline object PyArray_MultiIterNew1(a):
|
|
3712
3711
|
* return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<<
|
|
@@ -3720,7 +3719,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
3720
3719
|
__pyx_t_1 = 0;
|
|
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3720
|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":807
|
|
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3723
|
* ctypedef long double complex clongdouble_t
|
|
3725
3724
|
*
|
|
3726
3725
|
* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
|
|
@@ -3739,7 +3738,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
3739
3738
|
return __pyx_r;
|
|
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3739
|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":810
|
|
3743
3742
|
* return PyArray_MultiIterNew(1, <void*>a)
|
|
3744
3743
|
*
|
|
3745
3744
|
* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
|
@@ -3756,7 +3755,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3756
3755
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":811
|
|
3760
3759
|
*
|
|
3761
3760
|
* cdef inline object PyArray_MultiIterNew2(a, b):
|
|
3762
3761
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<<
|
|
@@ -3770,7 +3769,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3770
3769
|
__pyx_t_1 = 0;
|
|
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3770
|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":810
|
|
3774
3773
|
* return PyArray_MultiIterNew(1, <void*>a)
|
|
3775
3774
|
*
|
|
3776
3775
|
* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
|
@@ -3789,7 +3788,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3789
3788
|
return __pyx_r;
|
|
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3789
|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":813
|
|
3793
3792
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
|
3794
3793
|
*
|
|
3795
3794
|
* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
|
@@ -3806,7 +3805,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
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3805
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0);
|
|
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3807
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":814
|
|
3810
3809
|
*
|
|
3811
3810
|
* cdef inline object PyArray_MultiIterNew3(a, b, c):
|
|
3812
3811
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<<
|
|
@@ -3820,7 +3819,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
3820
3819
|
__pyx_t_1 = 0;
|
|
3821
3820
|
goto __pyx_L0;
|
|
3822
3821
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":813
|
|
3824
3823
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
|
3825
3824
|
*
|
|
3826
3825
|
* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
|
@@ -3839,7 +3838,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
3839
3838
|
return __pyx_r;
|
|
3840
3839
|
}
|
|
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3840
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":816
|
|
3843
3842
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
|
3844
3843
|
*
|
|
3845
3844
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -3856,7 +3855,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3856
3855
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":817
|
|
3860
3859
|
*
|
|
3861
3860
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d):
|
|
3862
3861
|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<<
|
|
@@ -3870,7 +3869,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3870
3869
|
__pyx_t_1 = 0;
|
|
3871
3870
|
goto __pyx_L0;
|
|
3872
3871
|
|
|
3873
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":816
|
|
3874
3873
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
|
3875
3874
|
*
|
|
3876
3875
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -3889,7 +3888,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3889
3888
|
return __pyx_r;
|
|
3890
3889
|
}
|
|
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|
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* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
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|
*
|
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|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -3906,7 +3905,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
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|
int __pyx_clineno = 0;
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":820
|
|
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|
*
|
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|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
|
|
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3911
|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<<
|
|
@@ -3920,7 +3919,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
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|
__pyx_t_1 = 0;
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":819
|
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|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
|
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|
*
|
|
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|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -3939,7 +3938,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
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|
return __pyx_r;
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":822
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -3954,7 +3953,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
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|
PyObject *__pyx_t_2;
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":823
|
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|
*
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
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|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -3964,7 +3963,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
__pyx_t_1 = PyDataType_HASSUBARRAY(__pyx_v_d);
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|
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|
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|
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|
* if PyDataType_HASSUBARRAY(d):
|
|
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|
* return <tuple>d.subarray.shape # <<<<<<<<<<<<<<
|
|
@@ -3977,7 +3976,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
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* cdef inline tuple PyDataType_SHAPE(dtype d):
|
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* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -3986,7 +3985,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
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|
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|
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|
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* return <tuple>d.subarray.shape
|
|
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* else:
|
|
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* return () # <<<<<<<<<<<<<<
|
|
@@ -4000,7 +3999,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
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|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -4015,7 +4014,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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* int _import_umath() except -1
|
|
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|
*
|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
|
|
@@ -4029,7 +4028,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
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|
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|
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* cdef inline void set_array_base(ndarray arr, object base) except *:
|
|
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|
* Py_INCREF(base) # important to do this before stealing the reference below! # <<<<<<<<<<<<<<
|
|
@@ -4038,7 +4037,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *:
|
|
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|
* Py_INCREF(base) # important to do this before stealing the reference below!
|
|
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|
* PyArray_SetBaseObject(arr, base) # <<<<<<<<<<<<<<
|
|
@@ -4047,7 +4046,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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|
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|
|
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|
__pyx_t_1 = PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(1, 1012, __pyx_L1_error)
|
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|
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|
* int _import_umath() except -1
|
|
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|
*
|
|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
|
|
@@ -4062,7 +4061,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
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|
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|
|
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* PyArray_SetBaseObject(arr, base)
|
|
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|
*
|
|
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|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -4077,7 +4076,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
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|
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|
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|
|
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|
*
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
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|
* base = PyArray_BASE(arr) # <<<<<<<<<<<<<<
|
|
@@ -4086,7 +4085,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
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|
|
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|
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|
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|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
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|
* base = PyArray_BASE(arr)
|
|
4092
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|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -4096,7 +4095,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
__pyx_t_1 = (__pyx_v_base == NULL);
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|
|
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|
* base = PyArray_BASE(arr)
|
|
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|
* if base is NULL:
|
|
4102
4101
|
* return None # <<<<<<<<<<<<<<
|
|
@@ -4107,7 +4106,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
__pyx_r = Py_None; __Pyx_INCREF(Py_None);
|
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|
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|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
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|
* base = PyArray_BASE(arr)
|
|
4113
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|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -4116,7 +4115,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4116
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|
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|
|
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|
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|
|
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|
* if base is NULL:
|
|
4121
4120
|
* return None
|
|
4122
4121
|
* return <object>base # <<<<<<<<<<<<<<
|
|
@@ -4128,7 +4127,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
__pyx_r = ((PyObject *)__pyx_v_base);
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
|
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|
* PyArray_SetBaseObject(arr, base)
|
|
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|
*
|
|
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4133
|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -4143,7 +4142,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
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|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1022
|
|
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|
* # Versions of the import_* functions which are more suitable for
|
|
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4147
|
* # Cython code.
|
|
4149
4148
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4170,7 +4169,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
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|
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|
|
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|
__Pyx_RefNannySetupContext("import_array", 0);
|
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|
|
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|
* # Cython code.
|
|
4175
4174
|
* cdef inline int import_array() except -1:
|
|
4176
4175
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4186,7 +4185,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
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4185
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
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|
/*try:*/ {
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
|
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|
* cdef inline int import_array() except -1:
|
|
4191
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|
* try:
|
|
4192
4191
|
* __pyx_import_array() # <<<<<<<<<<<<<<
|
|
@@ -4195,7 +4194,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4195
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|
*/
|
|
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|
__pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1024, __pyx_L3_error)
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1023
|
|
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|
* # Cython code.
|
|
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|
* cdef inline int import_array() except -1:
|
|
4201
4200
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4209,7 +4208,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
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4208
|
goto __pyx_L8_try_end;
|
|
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4209
|
__pyx_L3_error:;
|
|
4211
4210
|
|
|
4212
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4211
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1025
|
|
4213
4212
|
* try:
|
|
4214
4213
|
* __pyx_import_array()
|
|
4215
4214
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4224,7 +4223,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4224
4223
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4225
4224
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4226
4225
|
|
|
4227
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4226
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1026
|
|
4228
4227
|
* __pyx_import_array()
|
|
4229
4228
|
* except Exception:
|
|
4230
4229
|
* raise ImportError("numpy._core.multiarray failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4249,7 +4248,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4249
4248
|
}
|
|
4250
4249
|
goto __pyx_L5_except_error;
|
|
4251
4250
|
|
|
4252
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4251
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1023
|
|
4253
4252
|
* # Cython code.
|
|
4254
4253
|
* cdef inline int import_array() except -1:
|
|
4255
4254
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4265,7 +4264,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4265
4264
|
__pyx_L8_try_end:;
|
|
4266
4265
|
}
|
|
4267
4266
|
|
|
4268
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4267
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1022
|
|
4269
4268
|
* # Versions of the import_* functions which are more suitable for
|
|
4270
4269
|
* # Cython code.
|
|
4271
4270
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4290,7 +4289,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4290
4289
|
return __pyx_r;
|
|
4291
4290
|
}
|
|
4292
4291
|
|
|
4293
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4292
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1028
|
|
4294
4293
|
* raise ImportError("numpy._core.multiarray failed to import")
|
|
4295
4294
|
*
|
|
4296
4295
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4317,7 +4316,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4317
4316
|
int __pyx_clineno = 0;
|
|
4318
4317
|
__Pyx_RefNannySetupContext("import_umath", 0);
|
|
4319
4318
|
|
|
4320
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4319
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1029
|
|
4321
4320
|
*
|
|
4322
4321
|
* cdef inline int import_umath() except -1:
|
|
4323
4322
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4333,7 +4332,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4333
4332
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4334
4333
|
/*try:*/ {
|
|
4335
4334
|
|
|
4336
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4335
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1030
|
|
4337
4336
|
* cdef inline int import_umath() except -1:
|
|
4338
4337
|
* try:
|
|
4339
4338
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -4342,7 +4341,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4342
4341
|
*/
|
|
4343
4342
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1030, __pyx_L3_error)
|
|
4344
4343
|
|
|
4345
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4344
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1029
|
|
4346
4345
|
*
|
|
4347
4346
|
* cdef inline int import_umath() except -1:
|
|
4348
4347
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4356,7 +4355,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4356
4355
|
goto __pyx_L8_try_end;
|
|
4357
4356
|
__pyx_L3_error:;
|
|
4358
4357
|
|
|
4359
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4358
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1031
|
|
4360
4359
|
* try:
|
|
4361
4360
|
* _import_umath()
|
|
4362
4361
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4371,7 +4370,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4371
4370
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4372
4371
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4373
4372
|
|
|
4374
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4373
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1032
|
|
4375
4374
|
* _import_umath()
|
|
4376
4375
|
* except Exception:
|
|
4377
4376
|
* raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4396,7 +4395,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4396
4395
|
}
|
|
4397
4396
|
goto __pyx_L5_except_error;
|
|
4398
4397
|
|
|
4399
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4398
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1029
|
|
4400
4399
|
*
|
|
4401
4400
|
* cdef inline int import_umath() except -1:
|
|
4402
4401
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4412,7 +4411,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4412
4411
|
__pyx_L8_try_end:;
|
|
4413
4412
|
}
|
|
4414
4413
|
|
|
4415
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4414
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1028
|
|
4416
4415
|
* raise ImportError("numpy._core.multiarray failed to import")
|
|
4417
4416
|
*
|
|
4418
4417
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4437,7 +4436,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4437
4436
|
return __pyx_r;
|
|
4438
4437
|
}
|
|
4439
4438
|
|
|
4440
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4439
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1034
|
|
4441
4440
|
* raise ImportError("numpy._core.umath failed to import")
|
|
4442
4441
|
*
|
|
4443
4442
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4464,7 +4463,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4464
4463
|
int __pyx_clineno = 0;
|
|
4465
4464
|
__Pyx_RefNannySetupContext("import_ufunc", 0);
|
|
4466
4465
|
|
|
4467
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4466
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1035
|
|
4468
4467
|
*
|
|
4469
4468
|
* cdef inline int import_ufunc() except -1:
|
|
4470
4469
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4480,7 +4479,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4480
4479
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4481
4480
|
/*try:*/ {
|
|
4482
4481
|
|
|
4483
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4482
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1036
|
|
4484
4483
|
* cdef inline int import_ufunc() except -1:
|
|
4485
4484
|
* try:
|
|
4486
4485
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -4489,7 +4488,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4489
4488
|
*/
|
|
4490
4489
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1036, __pyx_L3_error)
|
|
4491
4490
|
|
|
4492
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4491
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1035
|
|
4493
4492
|
*
|
|
4494
4493
|
* cdef inline int import_ufunc() except -1:
|
|
4495
4494
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4503,7 +4502,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4503
4502
|
goto __pyx_L8_try_end;
|
|
4504
4503
|
__pyx_L3_error:;
|
|
4505
4504
|
|
|
4506
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4505
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1037
|
|
4507
4506
|
* try:
|
|
4508
4507
|
* _import_umath()
|
|
4509
4508
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4518,7 +4517,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4518
4517
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4519
4518
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4520
4519
|
|
|
4521
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4520
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1038
|
|
4522
4521
|
* _import_umath()
|
|
4523
4522
|
* except Exception:
|
|
4524
4523
|
* raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4543,7 +4542,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4543
4542
|
}
|
|
4544
4543
|
goto __pyx_L5_except_error;
|
|
4545
4544
|
|
|
4546
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4545
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1035
|
|
4547
4546
|
*
|
|
4548
4547
|
* cdef inline int import_ufunc() except -1:
|
|
4549
4548
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4559,7 +4558,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4559
4558
|
__pyx_L8_try_end:;
|
|
4560
4559
|
}
|
|
4561
4560
|
|
|
4562
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4561
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1034
|
|
4563
4562
|
* raise ImportError("numpy._core.umath failed to import")
|
|
4564
4563
|
*
|
|
4565
4564
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4584,7 +4583,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4584
4583
|
return __pyx_r;
|
|
4585
4584
|
}
|
|
4586
4585
|
|
|
4587
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4586
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1041
|
|
4588
4587
|
*
|
|
4589
4588
|
*
|
|
4590
4589
|
* cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4595,7 +4594,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4595
4594
|
static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
|
|
4596
4595
|
int __pyx_r;
|
|
4597
4596
|
|
|
4598
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4597
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1053
|
|
4599
4598
|
* bool
|
|
4600
4599
|
* """
|
|
4601
4600
|
* return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -4605,7 +4604,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4605
4604
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
|
|
4606
4605
|
goto __pyx_L0;
|
|
4607
4606
|
|
|
4608
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4607
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1041
|
|
4609
4608
|
*
|
|
4610
4609
|
*
|
|
4611
4610
|
* cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4618,7 +4617,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4618
4617
|
return __pyx_r;
|
|
4619
4618
|
}
|
|
4620
4619
|
|
|
4621
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4620
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1056
|
|
4622
4621
|
*
|
|
4623
4622
|
*
|
|
4624
4623
|
* cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4629,7 +4628,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4629
4628
|
static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
|
|
4630
4629
|
int __pyx_r;
|
|
4631
4630
|
|
|
4632
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4631
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1068
|
|
4633
4632
|
* bool
|
|
4634
4633
|
* """
|
|
4635
4634
|
* return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -4639,7 +4638,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4639
4638
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
|
|
4640
4639
|
goto __pyx_L0;
|
|
4641
4640
|
|
|
4642
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4641
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1056
|
|
4643
4642
|
*
|
|
4644
4643
|
*
|
|
4645
4644
|
* cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4652,7 +4651,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4652
4651
|
return __pyx_r;
|
|
4653
4652
|
}
|
|
4654
4653
|
|
|
4655
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4654
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1071
|
|
4656
4655
|
*
|
|
4657
4656
|
*
|
|
4658
4657
|
* cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4663,7 +4662,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4663
4662
|
static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
|
|
4664
4663
|
npy_datetime __pyx_r;
|
|
4665
4664
|
|
|
4666
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4665
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1078
|
|
4667
4666
|
* also needed. That can be found using `get_datetime64_unit`.
|
|
4668
4667
|
* """
|
|
4669
4668
|
* return (<PyDatetimeScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -4673,7 +4672,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4673
4672
|
__pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
|
|
4674
4673
|
goto __pyx_L0;
|
|
4675
4674
|
|
|
4676
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4675
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1071
|
|
4677
4676
|
*
|
|
4678
4677
|
*
|
|
4679
4678
|
* cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4686,7 +4685,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4686
4685
|
return __pyx_r;
|
|
4687
4686
|
}
|
|
4688
4687
|
|
|
4689
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4688
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1081
|
|
4690
4689
|
*
|
|
4691
4690
|
*
|
|
4692
4691
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4697,7 +4696,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4697
4696
|
static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
|
|
4698
4697
|
npy_timedelta __pyx_r;
|
|
4699
4698
|
|
|
4700
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4699
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1085
|
|
4701
4700
|
* returns the int64 value underlying scalar numpy timedelta64 object
|
|
4702
4701
|
* """
|
|
4703
4702
|
* return (<PyTimedeltaScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -4707,7 +4706,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4707
4706
|
__pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
|
|
4708
4707
|
goto __pyx_L0;
|
|
4709
4708
|
|
|
4710
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4709
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1081
|
|
4711
4710
|
*
|
|
4712
4711
|
*
|
|
4713
4712
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4720,7 +4719,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4720
4719
|
return __pyx_r;
|
|
4721
4720
|
}
|
|
4722
4721
|
|
|
4723
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4722
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1088
|
|
4724
4723
|
*
|
|
4725
4724
|
*
|
|
4726
4725
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4731,7 +4730,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4731
4730
|
static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
|
|
4732
4731
|
NPY_DATETIMEUNIT __pyx_r;
|
|
4733
4732
|
|
|
4734
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4733
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1092
|
|
4735
4734
|
* returns the unit part of the dtype for a numpy datetime64 object.
|
|
4736
4735
|
* """
|
|
4737
4736
|
* return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base # <<<<<<<<<<<<<<
|
|
@@ -4741,7 +4740,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
4741
4740
|
__pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
|
|
4742
4741
|
goto __pyx_L0;
|
|
4743
4742
|
|
|
4744
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4743
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-j_2gb50v/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1088
|
|
4745
4744
|
*
|
|
4746
4745
|
*
|
|
4747
4746
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4754,7 +4753,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
4754
4753
|
return __pyx_r;
|
|
4755
4754
|
}
|
|
4756
4755
|
|
|
4757
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4756
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":9
|
|
4758
4757
|
* from libc.stdint cimport int32_t
|
|
4759
4758
|
*
|
|
4760
4759
|
* def seqlength(seqdata): # <<<<<<<<<<<<<<
|
|
@@ -4801,32 +4800,32 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
4801
4800
|
{
|
|
4802
4801
|
PyObject ** const __pyx_pyargnames[] = {&__pyx_mstate_global->__pyx_n_u_seqdata,0};
|
|
4803
4802
|
const Py_ssize_t __pyx_kwds_len = (__pyx_kwds) ? __Pyx_NumKwargs_FASTCALL(__pyx_kwds) : 0;
|
|
4804
|
-
if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0,
|
|
4803
|
+
if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4805
4804
|
if (__pyx_kwds_len > 0) {
|
|
4806
4805
|
switch (__pyx_nargs) {
|
|
4807
4806
|
case 1:
|
|
4808
4807
|
values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
|
|
4809
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0,
|
|
4808
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4810
4809
|
CYTHON_FALLTHROUGH;
|
|
4811
4810
|
case 0: break;
|
|
4812
4811
|
default: goto __pyx_L5_argtuple_error;
|
|
4813
4812
|
}
|
|
4814
4813
|
const Py_ssize_t kwd_pos_args = __pyx_nargs;
|
|
4815
|
-
if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqlength", 0) < 0) __PYX_ERR(0,
|
|
4814
|
+
if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqlength", 0) < 0) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4816
4815
|
for (Py_ssize_t i = __pyx_nargs; i < 1; i++) {
|
|
4817
|
-
if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, i); __PYX_ERR(0,
|
|
4816
|
+
if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, i); __PYX_ERR(0, 9, __pyx_L3_error) }
|
|
4818
4817
|
}
|
|
4819
4818
|
} else if (unlikely(__pyx_nargs != 1)) {
|
|
4820
4819
|
goto __pyx_L5_argtuple_error;
|
|
4821
4820
|
} else {
|
|
4822
4821
|
values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
|
|
4823
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0,
|
|
4822
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4824
4823
|
}
|
|
4825
4824
|
__pyx_v_seqdata = values[0];
|
|
4826
4825
|
}
|
|
4827
4826
|
goto __pyx_L6_skip;
|
|
4828
4827
|
__pyx_L5_argtuple_error:;
|
|
4829
|
-
__Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, __pyx_nargs); __PYX_ERR(0,
|
|
4828
|
+
__Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4830
4829
|
__pyx_L6_skip:;
|
|
4831
4830
|
goto __pyx_L4_argument_unpacking_done;
|
|
4832
4831
|
__pyx_L3_error:;
|
|
@@ -4874,33 +4873,33 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4874
4873
|
__pyx_pybuffernd_seqarray_long.data = NULL;
|
|
4875
4874
|
__pyx_pybuffernd_seqarray_long.rcbuffer = &__pyx_pybuffer_seqarray_long;
|
|
4876
4875
|
|
|
4877
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4876
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":10
|
|
4878
4877
|
*
|
|
4879
4878
|
* def seqlength(seqdata):
|
|
4880
4879
|
* if isinstance(seqdata, SequenceData): # <<<<<<<<<<<<<<
|
|
4881
4880
|
* seqdata = seqdata.seqdata.replace(np.nan, -99)
|
|
4882
4881
|
*
|
|
4883
4882
|
*/
|
|
4884
|
-
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4883
|
+
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 10, __pyx_L1_error)
|
|
4885
4884
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4886
|
-
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_1); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0,
|
|
4885
|
+
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_1); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0, 10, __pyx_L1_error)
|
|
4887
4886
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
4888
4887
|
if (__pyx_t_2) {
|
|
4889
4888
|
|
|
4890
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4889
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":11
|
|
4891
4890
|
* def seqlength(seqdata):
|
|
4892
4891
|
* if isinstance(seqdata, SequenceData):
|
|
4893
4892
|
* seqdata = seqdata.seqdata.replace(np.nan, -99) # <<<<<<<<<<<<<<
|
|
4894
4893
|
*
|
|
4895
4894
|
* cdef cnp.ndarray[int32_t, ndim=2] seqarray_long
|
|
4896
4895
|
*/
|
|
4897
|
-
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_seqdata, __pyx_mstate_global->__pyx_n_u_seqdata); if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
|
|
4896
|
+
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_seqdata, __pyx_mstate_global->__pyx_n_u_seqdata); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4898
4897
|
__Pyx_GOTREF(__pyx_t_4);
|
|
4899
4898
|
__pyx_t_3 = __pyx_t_4;
|
|
4900
4899
|
__Pyx_INCREF(__pyx_t_3);
|
|
4901
|
-
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
|
|
4900
|
+
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4902
4901
|
__Pyx_GOTREF(__pyx_t_5);
|
|
4903
|
-
__pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_nan); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
|
|
4902
|
+
__pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_nan); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4904
4903
|
__Pyx_GOTREF(__pyx_t_6);
|
|
4905
4904
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
4906
4905
|
__pyx_t_7 = 0;
|
|
@@ -4910,13 +4909,13 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4910
4909
|
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
4911
4910
|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
|
4912
4911
|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
4913
|
-
if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4912
|
+
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4914
4913
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4915
4914
|
}
|
|
4916
4915
|
__Pyx_DECREF_SET(__pyx_v_seqdata, __pyx_t_1);
|
|
4917
4916
|
__pyx_t_1 = 0;
|
|
4918
4917
|
|
|
4919
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4918
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":10
|
|
4920
4919
|
*
|
|
4921
4920
|
* def seqlength(seqdata):
|
|
4922
4921
|
* if isinstance(seqdata, SequenceData): # <<<<<<<<<<<<<<
|
|
@@ -4925,23 +4924,23 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4925
4924
|
*/
|
|
4926
4925
|
}
|
|
4927
4926
|
|
|
4928
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4927
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":15
|
|
4929
4928
|
* cdef cnp.ndarray[int32_t, ndim=2] seqarray_long
|
|
4930
4929
|
*
|
|
4931
4930
|
* if isinstance(seqdata, pd.DataFrame): # <<<<<<<<<<<<<<
|
|
4932
4931
|
* seqarray_long = seqdata.to_numpy(dtype=np.int32)
|
|
4933
4932
|
* return np.sum(seqarray_long > 0, axis=1)
|
|
4934
4933
|
*/
|
|
4935
|
-
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_pd); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
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4934
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+
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_pd); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_1);
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|
-
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_DataFrame); if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
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|
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__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_DataFrame); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 15, __pyx_L1_error)
|
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__Pyx_GOTREF(__pyx_t_4);
|
|
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|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
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|
-
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_4); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0,
|
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4939
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__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_4); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0, 15, __pyx_L1_error)
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|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
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4941
|
if (__pyx_t_2) {
|
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4942
|
|
|
4944
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
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|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":16
|
|
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4944
|
*
|
|
4946
4945
|
* if isinstance(seqdata, pd.DataFrame):
|
|
4947
4946
|
* seqarray_long = seqdata.to_numpy(dtype=np.int32) # <<<<<<<<<<<<<<
|
|
@@ -4950,25 +4949,25 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4950
4949
|
*/
|
|
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4950
|
__pyx_t_1 = __pyx_v_seqdata;
|
|
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4951
|
__Pyx_INCREF(__pyx_t_1);
|
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4953
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-
__Pyx_GetModuleGlobalName(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
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4952
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__Pyx_GetModuleGlobalName(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 16, __pyx_L1_error)
|
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4953
|
__Pyx_GOTREF(__pyx_t_6);
|
|
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|
-
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
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4954
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__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 16, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_3);
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|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
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4957
|
__pyx_t_7 = 0;
|
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4958
|
{
|
|
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4959
|
PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_1, NULL};
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-
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
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4960
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__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 16, __pyx_L1_error)
|
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4961
|
__Pyx_GOTREF(__pyx_t_6);
|
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|
-
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if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_dtype, __pyx_t_3, __pyx_t_6, __pyx_callargs+1, 0) < 0) __PYX_ERR(0, 16, __pyx_L1_error)
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4964
4963
|
__pyx_t_4 = __Pyx_Object_VectorcallMethod_CallFromBuilder(__pyx_mstate_global->__pyx_n_u_to_numpy, __pyx_callargs+__pyx_t_7, (1-__pyx_t_7) | (1*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_6);
|
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4964
|
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
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|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
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|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
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-
if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
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if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 16, __pyx_L1_error)
|
|
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4968
|
__Pyx_GOTREF(__pyx_t_4);
|
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4969
|
}
|
|
4971
|
-
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0,
|
|
4970
|
+
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 16, __pyx_L1_error)
|
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4971
|
{
|
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4972
|
__Pyx_BufFmt_StackElem __pyx_stack[1];
|
|
4974
4973
|
__Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer);
|
|
@@ -4984,12 +4983,12 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4984
4983
|
__pyx_t_9 = __pyx_t_10 = __pyx_t_11 = 0;
|
|
4985
4984
|
}
|
|
4986
4985
|
__pyx_pybuffernd_seqarray_long.diminfo[0].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_seqarray_long.diminfo[0].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_seqarray_long.diminfo[1].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_seqarray_long.diminfo[1].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[1];
|
|
4987
|
-
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0,
|
|
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|
+
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 16, __pyx_L1_error)
|
|
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4987
|
}
|
|
4989
4988
|
__pyx_v_seqarray_long = ((PyArrayObject *)__pyx_t_4);
|
|
4990
4989
|
__pyx_t_4 = 0;
|
|
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4990
|
|
|
4992
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4991
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":17
|
|
4993
4992
|
* if isinstance(seqdata, pd.DataFrame):
|
|
4994
4993
|
* seqarray_long = seqdata.to_numpy(dtype=np.int32)
|
|
4995
4994
|
* return np.sum(seqarray_long > 0, axis=1) # <<<<<<<<<<<<<<
|
|
@@ -4998,12 +4997,12 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4998
4997
|
*/
|
|
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4998
|
__Pyx_XDECREF(__pyx_r);
|
|
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4999
|
__pyx_t_6 = NULL;
|
|
5001
|
-
__Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
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5000
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__Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 17, __pyx_L1_error)
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5002
5001
|
__Pyx_GOTREF(__pyx_t_3);
|
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5003
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-
__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
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|
5002
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__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 17, __pyx_L1_error)
|
|
5004
5003
|
__Pyx_GOTREF(__pyx_t_1);
|
|
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5004
|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
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|
-
__pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
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5005
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__pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 17, __pyx_L1_error)
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5007
5006
|
__pyx_t_7 = 1;
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|
5008
5007
|
#if CYTHON_UNPACK_METHODS
|
|
5009
5008
|
if (unlikely(PyMethod_Check(__pyx_t_1))) {
|
|
@@ -5018,22 +5017,22 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5018
5017
|
#endif
|
|
5019
5018
|
{
|
|
5020
5019
|
PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_6, __pyx_t_3};
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5021
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-
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5020
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+
__pyx_t_5 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 17, __pyx_L1_error)
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5022
5021
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__Pyx_GOTREF(__pyx_t_5);
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5023
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-
if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_5, __pyx_callargs+2, 0) < 0) __PYX_ERR(0,
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5022
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if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_5, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 17, __pyx_L1_error)
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5024
5023
|
__pyx_t_4 = __Pyx_Object_Vectorcall_CallFromBuilder(__pyx_t_1, __pyx_callargs+__pyx_t_7, (2-__pyx_t_7) | (__pyx_t_7*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_5);
|
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5025
5024
|
__Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
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5026
5025
|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
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5026
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
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5027
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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-
if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
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if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 17, __pyx_L1_error)
|
|
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5029
|
__Pyx_GOTREF(__pyx_t_4);
|
|
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5030
|
}
|
|
5032
5031
|
__pyx_r = __pyx_t_4;
|
|
5033
5032
|
__pyx_t_4 = 0;
|
|
5034
5033
|
goto __pyx_L0;
|
|
5035
5034
|
|
|
5036
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5035
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":15
|
|
5037
5036
|
* cdef cnp.ndarray[int32_t, ndim=2] seqarray_long
|
|
5038
5037
|
*
|
|
5039
5038
|
* if isinstance(seqdata, pd.DataFrame): # <<<<<<<<<<<<<<
|
|
@@ -5042,7 +5041,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5042
5041
|
*/
|
|
5043
5042
|
}
|
|
5044
5043
|
|
|
5045
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5044
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":20
|
|
5046
5045
|
*
|
|
5047
5046
|
* else:
|
|
5048
5047
|
* seqarray_long = seqdata # <<<<<<<<<<<<<<
|
|
@@ -5051,7 +5050,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5051
5050
|
/*else*/ {
|
|
5052
5051
|
__pyx_t_4 = __pyx_v_seqdata;
|
|
5053
5052
|
__Pyx_INCREF(__pyx_t_4);
|
|
5054
|
-
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0,
|
|
5053
|
+
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 20, __pyx_L1_error)
|
|
5055
5054
|
{
|
|
5056
5055
|
__Pyx_BufFmt_StackElem __pyx_stack[1];
|
|
5057
5056
|
__Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer);
|
|
@@ -5067,24 +5066,24 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5067
5066
|
__pyx_t_11 = __pyx_t_10 = __pyx_t_9 = 0;
|
|
5068
5067
|
}
|
|
5069
5068
|
__pyx_pybuffernd_seqarray_long.diminfo[0].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_seqarray_long.diminfo[0].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_seqarray_long.diminfo[1].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_seqarray_long.diminfo[1].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[1];
|
|
5070
|
-
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0,
|
|
5069
|
+
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 20, __pyx_L1_error)
|
|
5071
5070
|
}
|
|
5072
5071
|
__pyx_v_seqarray_long = ((PyArrayObject *)__pyx_t_4);
|
|
5073
5072
|
__pyx_t_4 = 0;
|
|
5074
5073
|
|
|
5075
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5074
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":21
|
|
5076
5075
|
* else:
|
|
5077
5076
|
* seqarray_long = seqdata
|
|
5078
5077
|
* return np.sum(seqarray_long > 0, axis=1) # <<<<<<<<<<<<<<
|
|
5079
5078
|
*/
|
|
5080
5079
|
__Pyx_XDECREF(__pyx_r);
|
|
5081
5080
|
__pyx_t_1 = NULL;
|
|
5082
|
-
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
|
|
5081
|
+
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5083
5082
|
__Pyx_GOTREF(__pyx_t_5);
|
|
5084
|
-
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
5083
|
+
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5085
5084
|
__Pyx_GOTREF(__pyx_t_3);
|
|
5086
5085
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
5087
|
-
__pyx_t_5 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
|
|
5086
|
+
__pyx_t_5 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5088
5087
|
__pyx_t_7 = 1;
|
|
5089
5088
|
#if CYTHON_UNPACK_METHODS
|
|
5090
5089
|
if (unlikely(PyMethod_Check(__pyx_t_3))) {
|
|
@@ -5099,15 +5098,15 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5099
5098
|
#endif
|
|
5100
5099
|
{
|
|
5101
5100
|
PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_1, __pyx_t_5};
|
|
5102
|
-
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
|
|
5101
|
+
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 21, __pyx_L1_error)
|
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5103
5102
|
__Pyx_GOTREF(__pyx_t_6);
|
|
5104
|
-
if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_6, __pyx_callargs+2, 0) < 0) __PYX_ERR(0,
|
|
5103
|
+
if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_6, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
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|
__pyx_t_4 = __Pyx_Object_Vectorcall_CallFromBuilder(__pyx_t_3, __pyx_callargs+__pyx_t_7, (2-__pyx_t_7) | (__pyx_t_7*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_6);
|
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|
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
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|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
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__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
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__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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-
if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
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if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 21, __pyx_L1_error)
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|
__Pyx_GOTREF(__pyx_t_4);
|
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}
|
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|
__pyx_r = __pyx_t_4;
|
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@@ -5115,7 +5114,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
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5115
5114
|
goto __pyx_L0;
|
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|
}
|
|
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5116
|
|
|
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|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5117
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":9
|
|
5119
5118
|
* from libc.stdint cimport int32_t
|
|
5120
5119
|
*
|
|
5121
5120
|
* def seqlength(seqdata): # <<<<<<<<<<<<<<
|
|
@@ -5672,61 +5671,63 @@ __Pyx_RefNannySetupContext("PyInit_seqlength", 0);
|
|
|
5672
5671
|
(void)__Pyx_modinit_function_import_code(__pyx_mstate);
|
|
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|
/*--- Execution code ---*/
|
|
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5673
|
|
|
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|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
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|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":2
|
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5675
|
+
* # cython: np_import_array=True
|
|
5676
5676
|
* import pandas as pd # <<<<<<<<<<<<<<
|
|
5677
5677
|
* import numpy as np
|
|
5678
5678
|
* cimport numpy as cnp
|
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5679
|
*/
|
|
5680
|
-
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_pandas, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
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|
+
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_pandas, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 2, __pyx_L1_error)
|
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5681
|
__Pyx_GOTREF(__pyx_t_2);
|
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|
-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_pd, __pyx_t_2) < 0) __PYX_ERR(0,
|
|
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|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_pd, __pyx_t_2) < 0) __PYX_ERR(0, 2, __pyx_L1_error)
|
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|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
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5684
|
|
|
5685
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5685
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":3
|
|
5686
|
+
* # cython: np_import_array=True
|
|
5686
5687
|
* import pandas as pd
|
|
5687
5688
|
* import numpy as np # <<<<<<<<<<<<<<
|
|
5688
5689
|
* cimport numpy as cnp
|
|
5689
|
-
*
|
|
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|
+
*
|
|
5690
5691
|
*/
|
|
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|
-
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
5692
|
+
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 3, __pyx_L1_error)
|
|
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|
__Pyx_GOTREF(__pyx_t_2);
|
|
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|
-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0,
|
|
5694
|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0, 3, __pyx_L1_error)
|
|
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|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
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5696
|
|
|
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|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5697
|
-
* import numpy as np
|
|
5697
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":6
|
|
5698
5698
|
* cimport numpy as cnp
|
|
5699
|
+
*
|
|
5699
5700
|
* from sequenzo.define_sequence_data import SequenceData # <<<<<<<<<<<<<<
|
|
5700
5701
|
* from libc.stdint cimport int32_t
|
|
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5702
|
*
|
|
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5703
|
*/
|
|
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|
-
__pyx_t_2 = __Pyx_PyList_Pack(1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
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|
+
__pyx_t_2 = __Pyx_PyList_Pack(1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 6, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_2);
|
|
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|
-
__pyx_t_3 = __Pyx_Import(__pyx_mstate_global->__pyx_n_u_sequenzo_define_sequence_data, __pyx_t_2, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
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|
+
__pyx_t_3 = __Pyx_Import(__pyx_mstate_global->__pyx_n_u_sequenzo_define_sequence_data, __pyx_t_2, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 6, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_3);
|
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|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
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|
-
__pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
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|
+
__pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 6, __pyx_L1_error)
|
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__Pyx_GOTREF(__pyx_t_2);
|
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|
-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_SequenceData, __pyx_t_2) < 0) __PYX_ERR(0,
|
|
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|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_SequenceData, __pyx_t_2) < 0) __PYX_ERR(0, 6, __pyx_L1_error)
|
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|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
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|
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|
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|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5715
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":9
|
|
5715
5716
|
* from libc.stdint cimport int32_t
|
|
5716
5717
|
*
|
|
5717
5718
|
* def seqlength(seqdata): # <<<<<<<<<<<<<<
|
|
5718
5719
|
* if isinstance(seqdata, SequenceData):
|
|
5719
5720
|
* seqdata = seqdata.seqdata.replace(np.nan, -99)
|
|
5720
5721
|
*/
|
|
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|
-
__pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_9seqlength_1seqlength, 0, __pyx_mstate_global->__pyx_n_u_seqlength, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0])); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
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|
+
__pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_9seqlength_1seqlength, 0, __pyx_mstate_global->__pyx_n_u_seqlength, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0])); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 9, __pyx_L1_error)
|
|
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|
__Pyx_GOTREF(__pyx_t_3);
|
|
5723
|
-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqlength, __pyx_t_3) < 0) __PYX_ERR(0,
|
|
5724
|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqlength, __pyx_t_3) < 0) __PYX_ERR(0, 9, __pyx_L1_error)
|
|
5724
5725
|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
5725
5726
|
|
|
5726
5727
|
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":1
|
|
5727
|
-
*
|
|
5728
|
+
* # cython: np_import_array=True # <<<<<<<<<<<<<<
|
|
5729
|
+
* import pandas as pd
|
|
5728
5730
|
* import numpy as np
|
|
5729
|
-
* cimport numpy as cnp
|
|
5730
5731
|
*/
|
|
5731
5732
|
__pyx_t_3 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
5732
5733
|
__Pyx_GOTREF(__pyx_t_3);
|
|
@@ -5874,7 +5875,7 @@ static int __Pyx_InitConstants(__pyx_mstatetype *__pyx_mstate) {
|
|
|
5874
5875
|
unsigned int num_kwonly_args : 1;
|
|
5875
5876
|
unsigned int nlocals : 2;
|
|
5876
5877
|
unsigned int flags : 10;
|
|
5877
|
-
unsigned int first_line :
|
|
5878
|
+
unsigned int first_line : 4;
|
|
5878
5879
|
unsigned int line_table_length : 12;
|
|
5879
5880
|
} __Pyx_PyCode_New_function_description;
|
|
5880
5881
|
/* NewCodeObj.proto */
|
|
@@ -5892,7 +5893,7 @@ static int __Pyx_CreateCodeObjects(__pyx_mstatetype *__pyx_mstate) {
|
|
|
5892
5893
|
PyObject* tuple_dedup_map = PyDict_New();
|
|
5893
5894
|
if (unlikely(!tuple_dedup_map)) return -1;
|
|
5894
5895
|
{
|
|
5895
|
-
const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS),
|
|
5896
|
+
const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 9, 105};
|
|
5896
5897
|
PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_seqdata, __pyx_mstate->__pyx_n_u_seqarray_long};
|
|
5897
5898
|
__pyx_mstate_global->__pyx_codeobj_tab[0] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_sequenzo_dissimilarity_measures_2, __pyx_mstate->__pyx_n_u_seqlength, __pyx_k_z_1_G1_z_2Q_y_r_r_QnBc_a_r_QnBc, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[0])) goto bad;
|
|
5898
5899
|
}
|