sequenzo 0.1.20__cp312-cp312-win_amd64.whl → 0.1.22__cp312-cp312-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (41) hide show
  1. sequenzo/big_data/clara/utils/get_weighted_diss.c +193 -193
  2. sequenzo/big_data/clara/utils/get_weighted_diss.cp312-win_amd64.pyd +0 -0
  3. sequenzo/clustering/clustering_c_code.cp312-win_amd64.pyd +0 -0
  4. sequenzo/clustering/hierarchical_clustering.py +1 -1
  5. sequenzo/define_sequence_data.py +4 -4
  6. sequenzo/dissimilarity_measures/c_code.cp312-win_amd64.pyd +0 -0
  7. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +170 -171
  8. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp312-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/utils/seqconc.c +232 -232
  10. sequenzo/dissimilarity_measures/utils/seqconc.cp312-win_amd64.pyd +0 -0
  11. sequenzo/dissimilarity_measures/utils/seqdss.c +325 -325
  12. sequenzo/dissimilarity_measures/utils/seqdss.cp312-win_amd64.pyd +0 -0
  13. sequenzo/dissimilarity_measures/utils/seqdur.c +325 -325
  14. sequenzo/dissimilarity_measures/utils/seqdur.cp312-win_amd64.pyd +0 -0
  15. sequenzo/dissimilarity_measures/utils/seqlength.c +225 -224
  16. sequenzo/dissimilarity_measures/utils/seqlength.cp312-win_amd64.pyd +0 -0
  17. sequenzo/multidomain/association_between_domains.py +1 -1
  18. sequenzo/multidomain/combt.py +4 -4
  19. sequenzo/multidomain/linked_polyad.py +3 -3
  20. sequenzo/prefix_tree/__init__.py +1 -1
  21. sequenzo/prefix_tree/individual_level_indicators.py +2 -2
  22. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +2 -2
  23. sequenzo/sequence_characteristics/plot_characteristics.py +2 -2
  24. sequenzo/sequence_characteristics/simple_characteristics.py +2 -2
  25. sequenzo/suffix_tree/__init__.py +1 -1
  26. sequenzo/suffix_tree/individual_level_indicators.py +3 -3
  27. sequenzo/visualization/plot_single_medoid.py +2 -2
  28. sequenzo/visualization/plot_transition_matrix.py +3 -2
  29. sequenzo/visualization/utils/utils.py +2 -2
  30. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +1 -1
  31. {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/METADATA +17 -43
  32. {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/RECORD +35 -41
  33. sequenzo/big_data/clara/utils/get_weighted_diss.pyx +0 -16
  34. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.pyx +0 -95
  35. sequenzo/dissimilarity_measures/utils/seqconc.pyx +0 -26
  36. sequenzo/dissimilarity_measures/utils/seqdss.pyx +0 -33
  37. sequenzo/dissimilarity_measures/utils/seqdur.pyx +0 -34
  38. sequenzo/dissimilarity_measures/utils/seqlength.pyx +0 -19
  39. {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/WHEEL +0 -0
  40. {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/licenses/LICENSE +0 -0
  41. {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/top_level.txt +0 -0
@@ -6,15 +6,15 @@
6
6
  "define_macros": [
7
7
  [
8
8
  "NPY_NO_DEPRECATED_API",
9
- "NPY_1_23_API_VERSION"
9
+ "NPY_1_7_API_VERSION"
10
10
  ]
11
11
  ],
12
12
  "depends": [
13
- "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-abt1xj3a\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\arrayobject.h",
14
- "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-abt1xj3a\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\arrayscalars.h",
15
- "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-abt1xj3a\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\ndarrayobject.h",
16
- "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-abt1xj3a\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\ndarraytypes.h",
17
- "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-abt1xj3a\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\ufuncobject.h"
13
+ "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-_m0bcxx9\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\arrayobject.h",
14
+ "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-_m0bcxx9\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\arrayscalars.h",
15
+ "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-_m0bcxx9\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\ndarrayobject.h",
16
+ "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-_m0bcxx9\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\ndarraytypes.h",
17
+ "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-_m0bcxx9\\overlay\\Lib\\site-packages\\numpy\\_core\\include\\numpy\\ufuncobject.h"
18
18
  ],
19
19
  "extra_compile_args": [
20
20
  "/W1",
@@ -23,12 +23,11 @@
23
23
  "/O2"
24
24
  ],
25
25
  "include_dirs": [
26
- "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-abt1xj3a\\overlay\\Lib\\site-packages\\pybind11\\include",
27
- "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-abt1xj3a\\overlay\\Lib\\site-packages\\pybind11\\include",
28
- "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-abt1xj3a\\overlay\\Lib\\site-packages\\numpy\\_core\\include",
26
+ "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-_m0bcxx9\\overlay\\Lib\\site-packages\\pybind11\\include",
27
+ "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-_m0bcxx9\\overlay\\Lib\\site-packages\\pybind11\\include",
28
+ "C:\\Users\\runneradmin\\AppData\\Local\\Temp\\pip-build-env-_m0bcxx9\\overlay\\Lib\\site-packages\\numpy\\_core\\include",
29
29
  "sequenzo/dissimilarity_measures/src/",
30
- "D:\\a\\Sequenzo\\Sequenzo\\sequenzo\\dissimilarity_measures\\src\\xsimd\\include",
31
- "sequenzo/clustering/src/"
30
+ "D:\\a\\Sequenzo\\Sequenzo\\sequenzo\\dissimilarity_measures\\src\\xsimd\\include"
32
31
  ],
33
32
  "name": "sequenzo.dissimilarity_measures.utils.seqdss",
34
33
  "sources": [
@@ -1398,7 +1397,7 @@ static const char *__pyx_filename;
1398
1397
 
1399
1398
  static const char* const __pyx_f[] = {
1400
1399
  "sequenzo/dissimilarity_measures/utils/seqdss.pyx",
1401
- "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd",
1400
+ "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd",
1402
1401
  "cpython/type.pxd",
1403
1402
  };
1404
1403
  /* #### Code section: utility_code_proto_before_types ### */
@@ -1598,7 +1597,7 @@ typedef struct {
1598
1597
 
1599
1598
  /* #### Code section: numeric_typedefs ### */
1600
1599
 
1601
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":743
1600
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":743
1602
1601
  * # in Cython to enable them only on the right systems.
1603
1602
  *
1604
1603
  * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
@@ -1607,7 +1606,7 @@ typedef struct {
1607
1606
  */
1608
1607
  typedef npy_int8 __pyx_t_5numpy_int8_t;
1609
1608
 
1610
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":744
1609
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":744
1611
1610
  *
1612
1611
  * ctypedef npy_int8 int8_t
1613
1612
  * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
@@ -1616,7 +1615,7 @@ typedef npy_int8 __pyx_t_5numpy_int8_t;
1616
1615
  */
1617
1616
  typedef npy_int16 __pyx_t_5numpy_int16_t;
1618
1617
 
1619
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":745
1618
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":745
1620
1619
  * ctypedef npy_int8 int8_t
1621
1620
  * ctypedef npy_int16 int16_t
1622
1621
  * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
@@ -1625,7 +1624,7 @@ typedef npy_int16 __pyx_t_5numpy_int16_t;
1625
1624
  */
1626
1625
  typedef npy_int32 __pyx_t_5numpy_int32_t;
1627
1626
 
1628
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":746
1627
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":746
1629
1628
  * ctypedef npy_int16 int16_t
1630
1629
  * ctypedef npy_int32 int32_t
1631
1630
  * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
@@ -1634,7 +1633,7 @@ typedef npy_int32 __pyx_t_5numpy_int32_t;
1634
1633
  */
1635
1634
  typedef npy_int64 __pyx_t_5numpy_int64_t;
1636
1635
 
1637
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":748
1636
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":748
1638
1637
  * ctypedef npy_int64 int64_t
1639
1638
  *
1640
1639
  * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
@@ -1643,7 +1642,7 @@ typedef npy_int64 __pyx_t_5numpy_int64_t;
1643
1642
  */
1644
1643
  typedef npy_uint8 __pyx_t_5numpy_uint8_t;
1645
1644
 
1646
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":749
1645
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":749
1647
1646
  *
1648
1647
  * ctypedef npy_uint8 uint8_t
1649
1648
  * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
@@ -1652,7 +1651,7 @@ typedef npy_uint8 __pyx_t_5numpy_uint8_t;
1652
1651
  */
1653
1652
  typedef npy_uint16 __pyx_t_5numpy_uint16_t;
1654
1653
 
1655
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":750
1654
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":750
1656
1655
  * ctypedef npy_uint8 uint8_t
1657
1656
  * ctypedef npy_uint16 uint16_t
1658
1657
  * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
@@ -1661,7 +1660,7 @@ typedef npy_uint16 __pyx_t_5numpy_uint16_t;
1661
1660
  */
1662
1661
  typedef npy_uint32 __pyx_t_5numpy_uint32_t;
1663
1662
 
1664
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":751
1663
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":751
1665
1664
  * ctypedef npy_uint16 uint16_t
1666
1665
  * ctypedef npy_uint32 uint32_t
1667
1666
  * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
@@ -1670,7 +1669,7 @@ typedef npy_uint32 __pyx_t_5numpy_uint32_t;
1670
1669
  */
1671
1670
  typedef npy_uint64 __pyx_t_5numpy_uint64_t;
1672
1671
 
1673
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":753
1672
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":753
1674
1673
  * ctypedef npy_uint64 uint64_t
1675
1674
  *
1676
1675
  * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
@@ -1679,7 +1678,7 @@ typedef npy_uint64 __pyx_t_5numpy_uint64_t;
1679
1678
  */
1680
1679
  typedef npy_float32 __pyx_t_5numpy_float32_t;
1681
1680
 
1682
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":754
1681
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":754
1683
1682
  *
1684
1683
  * ctypedef npy_float32 float32_t
1685
1684
  * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
@@ -1688,7 +1687,7 @@ typedef npy_float32 __pyx_t_5numpy_float32_t;
1688
1687
  */
1689
1688
  typedef npy_float64 __pyx_t_5numpy_float64_t;
1690
1689
 
1691
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":761
1690
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":761
1692
1691
  * ctypedef double complex complex128_t
1693
1692
  *
1694
1693
  * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
@@ -1697,7 +1696,7 @@ typedef npy_float64 __pyx_t_5numpy_float64_t;
1697
1696
  */
1698
1697
  typedef npy_longlong __pyx_t_5numpy_longlong_t;
1699
1698
 
1700
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":762
1699
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":762
1701
1700
  *
1702
1701
  * ctypedef npy_longlong longlong_t
1703
1702
  * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
@@ -1706,7 +1705,7 @@ typedef npy_longlong __pyx_t_5numpy_longlong_t;
1706
1705
  */
1707
1706
  typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
1708
1707
 
1709
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":764
1708
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":764
1710
1709
  * ctypedef npy_ulonglong ulonglong_t
1711
1710
  *
1712
1711
  * ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
@@ -1715,7 +1714,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
1715
1714
  */
1716
1715
  typedef npy_intp __pyx_t_5numpy_intp_t;
1717
1716
 
1718
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":765
1717
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":765
1719
1718
  *
1720
1719
  * ctypedef npy_intp intp_t
1721
1720
  * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
@@ -1724,7 +1723,7 @@ typedef npy_intp __pyx_t_5numpy_intp_t;
1724
1723
  */
1725
1724
  typedef npy_uintp __pyx_t_5numpy_uintp_t;
1726
1725
 
1727
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":767
1726
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":767
1728
1727
  * ctypedef npy_uintp uintp_t
1729
1728
  *
1730
1729
  * ctypedef npy_double float_t # <<<<<<<<<<<<<<
@@ -1733,7 +1732,7 @@ typedef npy_uintp __pyx_t_5numpy_uintp_t;
1733
1732
  */
1734
1733
  typedef npy_double __pyx_t_5numpy_float_t;
1735
1734
 
1736
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":768
1735
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":768
1737
1736
  *
1738
1737
  * ctypedef npy_double float_t
1739
1738
  * ctypedef npy_double double_t # <<<<<<<<<<<<<<
@@ -1742,7 +1741,7 @@ typedef npy_double __pyx_t_5numpy_float_t;
1742
1741
  */
1743
1742
  typedef npy_double __pyx_t_5numpy_double_t;
1744
1743
 
1745
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":769
1744
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":769
1746
1745
  * ctypedef npy_double float_t
1747
1746
  * ctypedef npy_double double_t
1748
1747
  * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
@@ -1792,7 +1791,7 @@ static CYTHON_INLINE __pyx_t_long_double_complex __pyx_t_long_double_complex_fro
1792
1791
  /*--- Type declarations ---*/
1793
1792
  struct __pyx_obj_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr;
1794
1793
 
1795
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":24
1794
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":26
1796
1795
  *
1797
1796
  * cdef list groups = [row[boundary & (row >= 0)] for row, boundary in zip(ffill, boundaries)]
1798
1797
  * cdef int max_groups = max(len(g) for g in groups) # <<<<<<<<<<<<<<
@@ -3301,7 +3300,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
3301
3300
  #endif
3302
3301
  /* #### Code section: module_code ### */
3303
3302
 
3304
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":242
3303
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":242
3305
3304
  * cdef int type_num
3306
3305
  *
3307
3306
  * @property # <<<<<<<<<<<<<<
@@ -3312,7 +3311,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
3312
3311
  static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_Descr *__pyx_v_self) {
3313
3312
  npy_intp __pyx_r;
3314
3313
 
3315
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":244
3314
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":244
3316
3315
  * @property
3317
3316
  * cdef inline npy_intp itemsize(self) noexcept nogil:
3318
3317
  * return PyDataType_ELSIZE(self) # <<<<<<<<<<<<<<
@@ -3322,7 +3321,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
3322
3321
  __pyx_r = PyDataType_ELSIZE(__pyx_v_self);
3323
3322
  goto __pyx_L0;
3324
3323
 
3325
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":242
3324
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":242
3326
3325
  * cdef int type_num
3327
3326
  *
3328
3327
  * @property # <<<<<<<<<<<<<<
@@ -3335,7 +3334,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
3335
3334
  return __pyx_r;
3336
3335
  }
3337
3336
 
3338
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
3337
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
3339
3338
  * return PyDataType_ELSIZE(self)
3340
3339
  *
3341
3340
  * @property # <<<<<<<<<<<<<<
@@ -3346,7 +3345,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
3346
3345
  static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray_Descr *__pyx_v_self) {
3347
3346
  npy_intp __pyx_r;
3348
3347
 
3349
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":248
3348
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":248
3350
3349
  * @property
3351
3350
  * cdef inline npy_intp alignment(self) noexcept nogil:
3352
3351
  * return PyDataType_ALIGNMENT(self) # <<<<<<<<<<<<<<
@@ -3356,7 +3355,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
3356
3355
  __pyx_r = PyDataType_ALIGNMENT(__pyx_v_self);
3357
3356
  goto __pyx_L0;
3358
3357
 
3359
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
3358
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
3360
3359
  * return PyDataType_ELSIZE(self)
3361
3360
  *
3362
3361
  * @property # <<<<<<<<<<<<<<
@@ -3369,7 +3368,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
3369
3368
  return __pyx_r;
3370
3369
  }
3371
3370
 
3372
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
3371
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
3373
3372
  * # Use fields/names with care as they may be NULL. You must check
3374
3373
  * # for this using PyDataType_HASFIELDS.
3375
3374
  * @property # <<<<<<<<<<<<<<
@@ -3383,7 +3382,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
3383
3382
  PyObject *__pyx_t_1;
3384
3383
  __Pyx_RefNannySetupContext("fields", 0);
3385
3384
 
3386
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":254
3385
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":254
3387
3386
  * @property
3388
3387
  * cdef inline object fields(self):
3389
3388
  * return <object>PyDataType_FIELDS(self) # <<<<<<<<<<<<<<
@@ -3396,7 +3395,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
3396
3395
  __pyx_r = ((PyObject *)__pyx_t_1);
3397
3396
  goto __pyx_L0;
3398
3397
 
3399
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
3398
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
3400
3399
  * # Use fields/names with care as they may be NULL. You must check
3401
3400
  * # for this using PyDataType_HASFIELDS.
3402
3401
  * @property # <<<<<<<<<<<<<<
@@ -3411,7 +3410,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
3411
3410
  return __pyx_r;
3412
3411
  }
3413
3412
 
3414
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":256
3413
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":256
3415
3414
  * return <object>PyDataType_FIELDS(self)
3416
3415
  *
3417
3416
  * @property # <<<<<<<<<<<<<<
@@ -3425,7 +3424,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
3425
3424
  PyObject *__pyx_t_1;
3426
3425
  __Pyx_RefNannySetupContext("names", 0);
3427
3426
 
3428
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":258
3427
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":258
3429
3428
  * @property
3430
3429
  * cdef inline tuple names(self):
3431
3430
  * return <tuple>PyDataType_NAMES(self) # <<<<<<<<<<<<<<
@@ -3438,7 +3437,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
3438
3437
  __pyx_r = ((PyObject*)__pyx_t_1);
3439
3438
  goto __pyx_L0;
3440
3439
 
3441
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":256
3440
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":256
3442
3441
  * return <object>PyDataType_FIELDS(self)
3443
3442
  *
3444
3443
  * @property # <<<<<<<<<<<<<<
@@ -3453,7 +3452,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
3453
3452
  return __pyx_r;
3454
3453
  }
3455
3454
 
3456
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":263
3455
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":263
3457
3456
  * # valid (the pointer can be NULL). Most users should access
3458
3457
  * # this field via the inline helper method PyDataType_SHAPE.
3459
3458
  * @property # <<<<<<<<<<<<<<
@@ -3464,7 +3463,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
3464
3463
  static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarray(PyArray_Descr *__pyx_v_self) {
3465
3464
  PyArray_ArrayDescr *__pyx_r;
3466
3465
 
3467
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":265
3466
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":265
3468
3467
  * @property
3469
3468
  * cdef inline PyArray_ArrayDescr* subarray(self) noexcept nogil:
3470
3469
  * return PyDataType_SUBARRAY(self) # <<<<<<<<<<<<<<
@@ -3474,7 +3473,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
3474
3473
  __pyx_r = PyDataType_SUBARRAY(__pyx_v_self);
3475
3474
  goto __pyx_L0;
3476
3475
 
3477
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":263
3476
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":263
3478
3477
  * # valid (the pointer can be NULL). Most users should access
3479
3478
  * # this field via the inline helper method PyDataType_SHAPE.
3480
3479
  * @property # <<<<<<<<<<<<<<
@@ -3487,7 +3486,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
3487
3486
  return __pyx_r;
3488
3487
  }
3489
3488
 
3490
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":267
3489
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":267
3491
3490
  * return PyDataType_SUBARRAY(self)
3492
3491
  *
3493
3492
  * @property # <<<<<<<<<<<<<<
@@ -3498,7 +3497,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
3498
3497
  static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr *__pyx_v_self) {
3499
3498
  npy_uint64 __pyx_r;
3500
3499
 
3501
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":270
3500
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":270
3502
3501
  * cdef inline npy_uint64 flags(self) noexcept nogil:
3503
3502
  * """The data types flags."""
3504
3503
  * return PyDataType_FLAGS(self) # <<<<<<<<<<<<<<
@@ -3508,7 +3507,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
3508
3507
  __pyx_r = PyDataType_FLAGS(__pyx_v_self);
3509
3508
  goto __pyx_L0;
3510
3509
 
3511
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":267
3510
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":267
3512
3511
  * return PyDataType_SUBARRAY(self)
3513
3512
  *
3514
3513
  * @property # <<<<<<<<<<<<<<
@@ -3521,7 +3520,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
3521
3520
  return __pyx_r;
3522
3521
  }
3523
3522
 
3524
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
3523
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
3525
3524
  * ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
3526
3525
  *
3527
3526
  * @property # <<<<<<<<<<<<<<
@@ -3532,7 +3531,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
3532
3531
  static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMultiIterObject *__pyx_v_self) {
3533
3532
  int __pyx_r;
3534
3533
 
3535
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":282
3534
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":282
3536
3535
  * cdef inline int numiter(self) noexcept nogil:
3537
3536
  * """The number of arrays that need to be broadcast to the same shape."""
3538
3537
  * return PyArray_MultiIter_NUMITER(self) # <<<<<<<<<<<<<<
@@ -3542,7 +3541,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
3542
3541
  __pyx_r = PyArray_MultiIter_NUMITER(__pyx_v_self);
3543
3542
  goto __pyx_L0;
3544
3543
 
3545
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
3544
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
3546
3545
  * ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
3547
3546
  *
3548
3547
  * @property # <<<<<<<<<<<<<<
@@ -3555,7 +3554,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
3555
3554
  return __pyx_r;
3556
3555
  }
3557
3556
 
3558
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":284
3557
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":284
3559
3558
  * return PyArray_MultiIter_NUMITER(self)
3560
3559
  *
3561
3560
  * @property # <<<<<<<<<<<<<<
@@ -3566,7 +3565,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
3566
3565
  static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiIterObject *__pyx_v_self) {
3567
3566
  npy_intp __pyx_r;
3568
3567
 
3569
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":287
3568
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":287
3570
3569
  * cdef inline npy_intp size(self) noexcept nogil:
3571
3570
  * """The total broadcasted size."""
3572
3571
  * return PyArray_MultiIter_SIZE(self) # <<<<<<<<<<<<<<
@@ -3576,7 +3575,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
3576
3575
  __pyx_r = PyArray_MultiIter_SIZE(__pyx_v_self);
3577
3576
  goto __pyx_L0;
3578
3577
 
3579
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":284
3578
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":284
3580
3579
  * return PyArray_MultiIter_NUMITER(self)
3581
3580
  *
3582
3581
  * @property # <<<<<<<<<<<<<<
@@ -3589,7 +3588,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
3589
3588
  return __pyx_r;
3590
3589
  }
3591
3590
 
3592
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
3591
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
3593
3592
  * return PyArray_MultiIter_SIZE(self)
3594
3593
  *
3595
3594
  * @property # <<<<<<<<<<<<<<
@@ -3600,7 +3599,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
3600
3599
  static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMultiIterObject *__pyx_v_self) {
3601
3600
  npy_intp __pyx_r;
3602
3601
 
3603
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":292
3602
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":292
3604
3603
  * cdef inline npy_intp index(self) noexcept nogil:
3605
3604
  * """The current (1-d) index into the broadcasted result."""
3606
3605
  * return PyArray_MultiIter_INDEX(self) # <<<<<<<<<<<<<<
@@ -3610,7 +3609,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
3610
3609
  __pyx_r = PyArray_MultiIter_INDEX(__pyx_v_self);
3611
3610
  goto __pyx_L0;
3612
3611
 
3613
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
3612
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
3614
3613
  * return PyArray_MultiIter_SIZE(self)
3615
3614
  *
3616
3615
  * @property # <<<<<<<<<<<<<<
@@ -3623,7 +3622,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
3623
3622
  return __pyx_r;
3624
3623
  }
3625
3624
 
3626
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":294
3625
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":294
3627
3626
  * return PyArray_MultiIter_INDEX(self)
3628
3627
  *
3629
3628
  * @property # <<<<<<<<<<<<<<
@@ -3634,7 +3633,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
3634
3633
  static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject *__pyx_v_self) {
3635
3634
  int __pyx_r;
3636
3635
 
3637
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":297
3636
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":297
3638
3637
  * cdef inline int nd(self) noexcept nogil:
3639
3638
  * """The number of dimensions in the broadcasted result."""
3640
3639
  * return PyArray_MultiIter_NDIM(self) # <<<<<<<<<<<<<<
@@ -3644,7 +3643,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
3644
3643
  __pyx_r = PyArray_MultiIter_NDIM(__pyx_v_self);
3645
3644
  goto __pyx_L0;
3646
3645
 
3647
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":294
3646
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":294
3648
3647
  * return PyArray_MultiIter_INDEX(self)
3649
3648
  *
3650
3649
  * @property # <<<<<<<<<<<<<<
@@ -3657,7 +3656,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
3657
3656
  return __pyx_r;
3658
3657
  }
3659
3658
 
3660
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":299
3659
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":299
3661
3660
  * return PyArray_MultiIter_NDIM(self)
3662
3661
  *
3663
3662
  * @property # <<<<<<<<<<<<<<
@@ -3668,7 +3667,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
3668
3667
  static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions(PyArrayMultiIterObject *__pyx_v_self) {
3669
3668
  npy_intp *__pyx_r;
3670
3669
 
3671
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":302
3670
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":302
3672
3671
  * cdef inline npy_intp* dimensions(self) noexcept nogil:
3673
3672
  * """The shape of the broadcasted result."""
3674
3673
  * return PyArray_MultiIter_DIMS(self) # <<<<<<<<<<<<<<
@@ -3678,7 +3677,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
3678
3677
  __pyx_r = PyArray_MultiIter_DIMS(__pyx_v_self);
3679
3678
  goto __pyx_L0;
3680
3679
 
3681
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":299
3680
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":299
3682
3681
  * return PyArray_MultiIter_NDIM(self)
3683
3682
  *
3684
3683
  * @property # <<<<<<<<<<<<<<
@@ -3691,7 +3690,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
3691
3690
  return __pyx_r;
3692
3691
  }
3693
3692
 
3694
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":304
3693
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":304
3695
3694
  * return PyArray_MultiIter_DIMS(self)
3696
3695
  *
3697
3696
  * @property # <<<<<<<<<<<<<<
@@ -3702,7 +3701,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
3702
3701
  static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiIterObject *__pyx_v_self) {
3703
3702
  void **__pyx_r;
3704
3703
 
3705
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":308
3704
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":308
3706
3705
  * """An array of iterator objects that holds the iterators for the arrays to be broadcast together.
3707
3706
  * On return, the iterators are adjusted for broadcasting."""
3708
3707
  * return PyArray_MultiIter_ITERS(self) # <<<<<<<<<<<<<<
@@ -3712,7 +3711,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
3712
3711
  __pyx_r = PyArray_MultiIter_ITERS(__pyx_v_self);
3713
3712
  goto __pyx_L0;
3714
3713
 
3715
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":304
3714
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":304
3716
3715
  * return PyArray_MultiIter_DIMS(self)
3717
3716
  *
3718
3717
  * @property # <<<<<<<<<<<<<<
@@ -3725,7 +3724,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
3725
3724
  return __pyx_r;
3726
3725
  }
3727
3726
 
3728
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
3727
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
3729
3728
  * # Instead, we use properties that map to the corresponding C-API functions.
3730
3729
  *
3731
3730
  * @property # <<<<<<<<<<<<<<
@@ -3736,7 +3735,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
3736
3735
  static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject *__pyx_v_self) {
3737
3736
  PyObject *__pyx_r;
3738
3737
 
3739
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":326
3738
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":326
3740
3739
  * """Returns a borrowed reference to the object owning the data/memory.
3741
3740
  * """
3742
3741
  * return PyArray_BASE(self) # <<<<<<<<<<<<<<
@@ -3746,7 +3745,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
3746
3745
  __pyx_r = PyArray_BASE(__pyx_v_self);
3747
3746
  goto __pyx_L0;
3748
3747
 
3749
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
3748
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
3750
3749
  * # Instead, we use properties that map to the corresponding C-API functions.
3751
3750
  *
3752
3751
  * @property # <<<<<<<<<<<<<<
@@ -3759,7 +3758,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
3759
3758
  return __pyx_r;
3760
3759
  }
3761
3760
 
3762
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":328
3761
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":328
3763
3762
  * return PyArray_BASE(self)
3764
3763
  *
3765
3764
  * @property # <<<<<<<<<<<<<<
@@ -3773,7 +3772,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
3773
3772
  PyArray_Descr *__pyx_t_1;
3774
3773
  __Pyx_RefNannySetupContext("descr", 0);
3775
3774
 
3776
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":332
3775
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":332
3777
3776
  * """Returns an owned reference to the dtype of the array.
3778
3777
  * """
3779
3778
  * return <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
@@ -3786,7 +3785,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
3786
3785
  __pyx_r = ((PyArray_Descr *)__pyx_t_1);
3787
3786
  goto __pyx_L0;
3788
3787
 
3789
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":328
3788
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":328
3790
3789
  * return PyArray_BASE(self)
3791
3790
  *
3792
3791
  * @property # <<<<<<<<<<<<<<
@@ -3801,7 +3800,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
3801
3800
  return __pyx_r;
3802
3801
  }
3803
3802
 
3804
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":334
3803
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":334
3805
3804
  * return <dtype>PyArray_DESCR(self)
3806
3805
  *
3807
3806
  * @property # <<<<<<<<<<<<<<
@@ -3812,7 +3811,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
3812
3811
  static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx_v_self) {
3813
3812
  int __pyx_r;
3814
3813
 
3815
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":338
3814
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":338
3816
3815
  * """Returns the number of dimensions in the array.
3817
3816
  * """
3818
3817
  * return PyArray_NDIM(self) # <<<<<<<<<<<<<<
@@ -3822,7 +3821,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
3822
3821
  __pyx_r = PyArray_NDIM(__pyx_v_self);
3823
3822
  goto __pyx_L0;
3824
3823
 
3825
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":334
3824
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":334
3826
3825
  * return <dtype>PyArray_DESCR(self)
3827
3826
  *
3828
3827
  * @property # <<<<<<<<<<<<<<
@@ -3835,7 +3834,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
3835
3834
  return __pyx_r;
3836
3835
  }
3837
3836
 
3838
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":340
3837
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":340
3839
3838
  * return PyArray_NDIM(self)
3840
3839
  *
3841
3840
  * @property # <<<<<<<<<<<<<<
@@ -3846,7 +3845,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
3846
3845
  static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObject *__pyx_v_self) {
3847
3846
  npy_intp *__pyx_r;
3848
3847
 
3849
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":346
3848
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":346
3850
3849
  * Can return NULL for 0-dimensional arrays.
3851
3850
  * """
3852
3851
  * return PyArray_DIMS(self) # <<<<<<<<<<<<<<
@@ -3856,7 +3855,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
3856
3855
  __pyx_r = PyArray_DIMS(__pyx_v_self);
3857
3856
  goto __pyx_L0;
3858
3857
 
3859
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":340
3858
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":340
3860
3859
  * return PyArray_NDIM(self)
3861
3860
  *
3862
3861
  * @property # <<<<<<<<<<<<<<
@@ -3869,7 +3868,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
3869
3868
  return __pyx_r;
3870
3869
  }
3871
3870
 
3872
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":348
3871
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":348
3873
3872
  * return PyArray_DIMS(self)
3874
3873
  *
3875
3874
  * @property # <<<<<<<<<<<<<<
@@ -3880,7 +3879,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
3880
3879
  static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayObject *__pyx_v_self) {
3881
3880
  npy_intp *__pyx_r;
3882
3881
 
3883
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":353
3882
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":353
3884
3883
  * The number of elements matches the number of dimensions of the array (ndim).
3885
3884
  * """
3886
3885
  * return PyArray_STRIDES(self) # <<<<<<<<<<<<<<
@@ -3890,7 +3889,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
3890
3889
  __pyx_r = PyArray_STRIDES(__pyx_v_self);
3891
3890
  goto __pyx_L0;
3892
3891
 
3893
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":348
3892
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":348
3894
3893
  * return PyArray_DIMS(self)
3895
3894
  *
3896
3895
  * @property # <<<<<<<<<<<<<<
@@ -3903,7 +3902,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
3903
3902
  return __pyx_r;
3904
3903
  }
3905
3904
 
3906
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":355
3905
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":355
3907
3906
  * return PyArray_STRIDES(self)
3908
3907
  *
3909
3908
  * @property # <<<<<<<<<<<<<<
@@ -3914,7 +3913,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
3914
3913
  static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *__pyx_v_self) {
3915
3914
  npy_intp __pyx_r;
3916
3915
 
3917
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":359
3916
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":359
3918
3917
  * """Returns the total size (in number of elements) of the array.
3919
3918
  * """
3920
3919
  * return PyArray_SIZE(self) # <<<<<<<<<<<<<<
@@ -3924,7 +3923,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
3924
3923
  __pyx_r = PyArray_SIZE(__pyx_v_self);
3925
3924
  goto __pyx_L0;
3926
3925
 
3927
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":355
3926
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":355
3928
3927
  * return PyArray_STRIDES(self)
3929
3928
  *
3930
3929
  * @property # <<<<<<<<<<<<<<
@@ -3937,7 +3936,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
3937
3936
  return __pyx_r;
3938
3937
  }
3939
3938
 
3940
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":361
3939
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":361
3941
3940
  * return PyArray_SIZE(self)
3942
3941
  *
3943
3942
  * @property # <<<<<<<<<<<<<<
@@ -3948,7 +3947,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
3948
3947
  static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__pyx_v_self) {
3949
3948
  char *__pyx_r;
3950
3949
 
3951
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":368
3950
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":368
3952
3951
  * of `PyArray_DATA()` instead, which returns a 'void*'.
3953
3952
  * """
3954
3953
  * return PyArray_BYTES(self) # <<<<<<<<<<<<<<
@@ -3958,7 +3957,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
3958
3957
  __pyx_r = PyArray_BYTES(__pyx_v_self);
3959
3958
  goto __pyx_L0;
3960
3959
 
3961
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":361
3960
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":361
3962
3961
  * return PyArray_SIZE(self)
3963
3962
  *
3964
3963
  * @property # <<<<<<<<<<<<<<
@@ -3971,7 +3970,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
3971
3970
  return __pyx_r;
3972
3971
  }
3973
3972
 
3974
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":776
3973
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":776
3975
3974
  * ctypedef long double complex clongdouble_t
3976
3975
  *
3977
3976
  * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
@@ -3988,7 +3987,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
3988
3987
  int __pyx_clineno = 0;
3989
3988
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0);
3990
3989
 
3991
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":777
3990
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":777
3992
3991
  *
3993
3992
  * cdef inline object PyArray_MultiIterNew1(a):
3994
3993
  * return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<<
@@ -4002,7 +4001,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
4002
4001
  __pyx_t_1 = 0;
4003
4002
  goto __pyx_L0;
4004
4003
 
4005
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":776
4004
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":776
4006
4005
  * ctypedef long double complex clongdouble_t
4007
4006
  *
4008
4007
  * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
@@ -4021,7 +4020,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
4021
4020
  return __pyx_r;
4022
4021
  }
4023
4022
 
4024
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":779
4023
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":779
4025
4024
  * return PyArray_MultiIterNew(1, <void*>a)
4026
4025
  *
4027
4026
  * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
@@ -4038,7 +4037,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
4038
4037
  int __pyx_clineno = 0;
4039
4038
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0);
4040
4039
 
4041
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":780
4040
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":780
4042
4041
  *
4043
4042
  * cdef inline object PyArray_MultiIterNew2(a, b):
4044
4043
  * return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<<
@@ -4052,7 +4051,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
4052
4051
  __pyx_t_1 = 0;
4053
4052
  goto __pyx_L0;
4054
4053
 
4055
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":779
4054
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":779
4056
4055
  * return PyArray_MultiIterNew(1, <void*>a)
4057
4056
  *
4058
4057
  * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
@@ -4071,7 +4070,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
4071
4070
  return __pyx_r;
4072
4071
  }
4073
4072
 
4074
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":782
4073
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":782
4075
4074
  * return PyArray_MultiIterNew(2, <void*>a, <void*>b)
4076
4075
  *
4077
4076
  * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
@@ -4088,7 +4087,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
4088
4087
  int __pyx_clineno = 0;
4089
4088
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0);
4090
4089
 
4091
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":783
4090
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":783
4092
4091
  *
4093
4092
  * cdef inline object PyArray_MultiIterNew3(a, b, c):
4094
4093
  * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<<
@@ -4102,7 +4101,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
4102
4101
  __pyx_t_1 = 0;
4103
4102
  goto __pyx_L0;
4104
4103
 
4105
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":782
4104
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":782
4106
4105
  * return PyArray_MultiIterNew(2, <void*>a, <void*>b)
4107
4106
  *
4108
4107
  * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
@@ -4121,7 +4120,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
4121
4120
  return __pyx_r;
4122
4121
  }
4123
4122
 
4124
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":785
4123
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":785
4125
4124
  * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
4126
4125
  *
4127
4126
  * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
@@ -4138,7 +4137,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
4138
4137
  int __pyx_clineno = 0;
4139
4138
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0);
4140
4139
 
4141
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":786
4140
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":786
4142
4141
  *
4143
4142
  * cdef inline object PyArray_MultiIterNew4(a, b, c, d):
4144
4143
  * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<<
@@ -4152,7 +4151,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
4152
4151
  __pyx_t_1 = 0;
4153
4152
  goto __pyx_L0;
4154
4153
 
4155
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":785
4154
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":785
4156
4155
  * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
4157
4156
  *
4158
4157
  * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
@@ -4171,7 +4170,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
4171
4170
  return __pyx_r;
4172
4171
  }
4173
4172
 
4174
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":788
4173
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":788
4175
4174
  * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
4176
4175
  *
4177
4176
  * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
@@ -4188,7 +4187,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
4188
4187
  int __pyx_clineno = 0;
4189
4188
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 0);
4190
4189
 
4191
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":789
4190
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":789
4192
4191
  *
4193
4192
  * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
4194
4193
  * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<<
@@ -4202,7 +4201,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
4202
4201
  __pyx_t_1 = 0;
4203
4202
  goto __pyx_L0;
4204
4203
 
4205
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":788
4204
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":788
4206
4205
  * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
4207
4206
  *
4208
4207
  * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
@@ -4221,7 +4220,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
4221
4220
  return __pyx_r;
4222
4221
  }
4223
4222
 
4224
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":791
4223
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":791
4225
4224
  * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
4226
4225
  *
4227
4226
  * cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
@@ -4236,7 +4235,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
4236
4235
  PyObject *__pyx_t_2;
4237
4236
  __Pyx_RefNannySetupContext("PyDataType_SHAPE", 0);
4238
4237
 
4239
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
4238
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
4240
4239
  *
4241
4240
  * cdef inline tuple PyDataType_SHAPE(dtype d):
4242
4241
  * if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
@@ -4246,7 +4245,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
4246
4245
  __pyx_t_1 = PyDataType_HASSUBARRAY(__pyx_v_d);
4247
4246
  if (__pyx_t_1) {
4248
4247
 
4249
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":793
4248
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":793
4250
4249
  * cdef inline tuple PyDataType_SHAPE(dtype d):
4251
4250
  * if PyDataType_HASSUBARRAY(d):
4252
4251
  * return <tuple>d.subarray.shape # <<<<<<<<<<<<<<
@@ -4259,7 +4258,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
4259
4258
  __pyx_r = ((PyObject*)__pyx_t_2);
4260
4259
  goto __pyx_L0;
4261
4260
 
4262
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
4261
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
4263
4262
  *
4264
4263
  * cdef inline tuple PyDataType_SHAPE(dtype d):
4265
4264
  * if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
@@ -4268,7 +4267,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
4268
4267
  */
4269
4268
  }
4270
4269
 
4271
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":795
4270
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":795
4272
4271
  * return <tuple>d.subarray.shape
4273
4272
  * else:
4274
4273
  * return () # <<<<<<<<<<<<<<
@@ -4282,7 +4281,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
4282
4281
  goto __pyx_L0;
4283
4282
  }
4284
4283
 
4285
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":791
4284
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":791
4286
4285
  * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
4287
4286
  *
4288
4287
  * cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
@@ -4297,7 +4296,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
4297
4296
  return __pyx_r;
4298
4297
  }
4299
4298
 
4300
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":994
4299
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":994
4301
4300
  * int _import_umath() except -1
4302
4301
  *
4303
4302
  * cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
@@ -4311,7 +4310,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
4311
4310
  const char *__pyx_filename = NULL;
4312
4311
  int __pyx_clineno = 0;
4313
4312
 
4314
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
4313
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
4315
4314
  *
4316
4315
  * cdef inline void set_array_base(ndarray arr, object base) except *:
4317
4316
  * Py_INCREF(base) # important to do this before stealing the reference below! # <<<<<<<<<<<<<<
@@ -4320,7 +4319,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
4320
4319
  */
4321
4320
  Py_INCREF(__pyx_v_base);
4322
4321
 
4323
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
4322
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
4324
4323
  * cdef inline void set_array_base(ndarray arr, object base) except *:
4325
4324
  * Py_INCREF(base) # important to do this before stealing the reference below!
4326
4325
  * PyArray_SetBaseObject(arr, base) # <<<<<<<<<<<<<<
@@ -4329,7 +4328,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
4329
4328
  */
4330
4329
  __pyx_t_1 = PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(1, 996, __pyx_L1_error)
4331
4330
 
4332
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":994
4331
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":994
4333
4332
  * int _import_umath() except -1
4334
4333
  *
4335
4334
  * cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
@@ -4344,7 +4343,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
4344
4343
  __pyx_L0:;
4345
4344
  }
4346
4345
 
4347
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":998
4346
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":998
4348
4347
  * PyArray_SetBaseObject(arr, base)
4349
4348
  *
4350
4349
  * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
@@ -4359,7 +4358,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
4359
4358
  int __pyx_t_1;
4360
4359
  __Pyx_RefNannySetupContext("get_array_base", 0);
4361
4360
 
4362
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":999
4361
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":999
4363
4362
  *
4364
4363
  * cdef inline object get_array_base(ndarray arr):
4365
4364
  * base = PyArray_BASE(arr) # <<<<<<<<<<<<<<
@@ -4368,7 +4367,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
4368
4367
  */
4369
4368
  __pyx_v_base = PyArray_BASE(__pyx_v_arr);
4370
4369
 
4371
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1000
4370
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1000
4372
4371
  * cdef inline object get_array_base(ndarray arr):
4373
4372
  * base = PyArray_BASE(arr)
4374
4373
  * if base is NULL: # <<<<<<<<<<<<<<
@@ -4378,7 +4377,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
4378
4377
  __pyx_t_1 = (__pyx_v_base == NULL);
4379
4378
  if (__pyx_t_1) {
4380
4379
 
4381
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1001
4380
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1001
4382
4381
  * base = PyArray_BASE(arr)
4383
4382
  * if base is NULL:
4384
4383
  * return None # <<<<<<<<<<<<<<
@@ -4389,7 +4388,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
4389
4388
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
4390
4389
  goto __pyx_L0;
4391
4390
 
4392
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1000
4391
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1000
4393
4392
  * cdef inline object get_array_base(ndarray arr):
4394
4393
  * base = PyArray_BASE(arr)
4395
4394
  * if base is NULL: # <<<<<<<<<<<<<<
@@ -4398,7 +4397,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
4398
4397
  */
4399
4398
  }
4400
4399
 
4401
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1002
4400
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1002
4402
4401
  * if base is NULL:
4403
4402
  * return None
4404
4403
  * return <object>base # <<<<<<<<<<<<<<
@@ -4410,7 +4409,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
4410
4409
  __pyx_r = ((PyObject *)__pyx_v_base);
4411
4410
  goto __pyx_L0;
4412
4411
 
4413
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":998
4412
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":998
4414
4413
  * PyArray_SetBaseObject(arr, base)
4415
4414
  *
4416
4415
  * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
@@ -4425,7 +4424,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
4425
4424
  return __pyx_r;
4426
4425
  }
4427
4426
 
4428
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1006
4427
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1006
4429
4428
  * # Versions of the import_* functions which are more suitable for
4430
4429
  * # Cython code.
4431
4430
  * cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
@@ -4452,7 +4451,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
4452
4451
  int __pyx_clineno = 0;
4453
4452
  __Pyx_RefNannySetupContext("import_array", 0);
4454
4453
 
4455
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1007
4454
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1007
4456
4455
  * # Cython code.
4457
4456
  * cdef inline int import_array() except -1:
4458
4457
  * try: # <<<<<<<<<<<<<<
@@ -4468,7 +4467,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
4468
4467
  __Pyx_XGOTREF(__pyx_t_3);
4469
4468
  /*try:*/ {
4470
4469
 
4471
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1008
4470
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1008
4472
4471
  * cdef inline int import_array() except -1:
4473
4472
  * try:
4474
4473
  * __pyx_import_array() # <<<<<<<<<<<<<<
@@ -4477,7 +4476,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
4477
4476
  */
4478
4477
  __pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1008, __pyx_L3_error)
4479
4478
 
4480
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1007
4479
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1007
4481
4480
  * # Cython code.
4482
4481
  * cdef inline int import_array() except -1:
4483
4482
  * try: # <<<<<<<<<<<<<<
@@ -4491,7 +4490,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
4491
4490
  goto __pyx_L8_try_end;
4492
4491
  __pyx_L3_error:;
4493
4492
 
4494
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1009
4493
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1009
4495
4494
  * try:
4496
4495
  * __pyx_import_array()
4497
4496
  * except Exception: # <<<<<<<<<<<<<<
@@ -4506,7 +4505,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
4506
4505
  __Pyx_XGOTREF(__pyx_t_6);
4507
4506
  __Pyx_XGOTREF(__pyx_t_7);
4508
4507
 
4509
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1010
4508
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1010
4510
4509
  * __pyx_import_array()
4511
4510
  * except Exception:
4512
4511
  * raise ImportError("numpy._core.multiarray failed to import") # <<<<<<<<<<<<<<
@@ -4531,7 +4530,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
4531
4530
  }
4532
4531
  goto __pyx_L5_except_error;
4533
4532
 
4534
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1007
4533
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1007
4535
4534
  * # Cython code.
4536
4535
  * cdef inline int import_array() except -1:
4537
4536
  * try: # <<<<<<<<<<<<<<
@@ -4547,7 +4546,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
4547
4546
  __pyx_L8_try_end:;
4548
4547
  }
4549
4548
 
4550
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1006
4549
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1006
4551
4550
  * # Versions of the import_* functions which are more suitable for
4552
4551
  * # Cython code.
4553
4552
  * cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
@@ -4572,7 +4571,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
4572
4571
  return __pyx_r;
4573
4572
  }
4574
4573
 
4575
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1012
4574
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1012
4576
4575
  * raise ImportError("numpy._core.multiarray failed to import")
4577
4576
  *
4578
4577
  * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
@@ -4599,7 +4598,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
4599
4598
  int __pyx_clineno = 0;
4600
4599
  __Pyx_RefNannySetupContext("import_umath", 0);
4601
4600
 
4602
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
4601
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
4603
4602
  *
4604
4603
  * cdef inline int import_umath() except -1:
4605
4604
  * try: # <<<<<<<<<<<<<<
@@ -4615,7 +4614,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
4615
4614
  __Pyx_XGOTREF(__pyx_t_3);
4616
4615
  /*try:*/ {
4617
4616
 
4618
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1014
4617
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1014
4619
4618
  * cdef inline int import_umath() except -1:
4620
4619
  * try:
4621
4620
  * _import_umath() # <<<<<<<<<<<<<<
@@ -4624,7 +4623,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
4624
4623
  */
4625
4624
  __pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1014, __pyx_L3_error)
4626
4625
 
4627
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
4626
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
4628
4627
  *
4629
4628
  * cdef inline int import_umath() except -1:
4630
4629
  * try: # <<<<<<<<<<<<<<
@@ -4638,7 +4637,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
4638
4637
  goto __pyx_L8_try_end;
4639
4638
  __pyx_L3_error:;
4640
4639
 
4641
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1015
4640
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1015
4642
4641
  * try:
4643
4642
  * _import_umath()
4644
4643
  * except Exception: # <<<<<<<<<<<<<<
@@ -4653,7 +4652,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
4653
4652
  __Pyx_XGOTREF(__pyx_t_6);
4654
4653
  __Pyx_XGOTREF(__pyx_t_7);
4655
4654
 
4656
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1016
4655
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1016
4657
4656
  * _import_umath()
4658
4657
  * except Exception:
4659
4658
  * raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
@@ -4678,7 +4677,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
4678
4677
  }
4679
4678
  goto __pyx_L5_except_error;
4680
4679
 
4681
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
4680
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
4682
4681
  *
4683
4682
  * cdef inline int import_umath() except -1:
4684
4683
  * try: # <<<<<<<<<<<<<<
@@ -4694,7 +4693,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
4694
4693
  __pyx_L8_try_end:;
4695
4694
  }
4696
4695
 
4697
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1012
4696
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1012
4698
4697
  * raise ImportError("numpy._core.multiarray failed to import")
4699
4698
  *
4700
4699
  * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
@@ -4719,7 +4718,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
4719
4718
  return __pyx_r;
4720
4719
  }
4721
4720
 
4722
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1018
4721
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1018
4723
4722
  * raise ImportError("numpy._core.umath failed to import")
4724
4723
  *
4725
4724
  * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
@@ -4746,7 +4745,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
4746
4745
  int __pyx_clineno = 0;
4747
4746
  __Pyx_RefNannySetupContext("import_ufunc", 0);
4748
4747
 
4749
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1019
4748
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1019
4750
4749
  *
4751
4750
  * cdef inline int import_ufunc() except -1:
4752
4751
  * try: # <<<<<<<<<<<<<<
@@ -4762,7 +4761,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
4762
4761
  __Pyx_XGOTREF(__pyx_t_3);
4763
4762
  /*try:*/ {
4764
4763
 
4765
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1020
4764
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1020
4766
4765
  * cdef inline int import_ufunc() except -1:
4767
4766
  * try:
4768
4767
  * _import_umath() # <<<<<<<<<<<<<<
@@ -4771,7 +4770,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
4771
4770
  */
4772
4771
  __pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1020, __pyx_L3_error)
4773
4772
 
4774
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1019
4773
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1019
4775
4774
  *
4776
4775
  * cdef inline int import_ufunc() except -1:
4777
4776
  * try: # <<<<<<<<<<<<<<
@@ -4785,7 +4784,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
4785
4784
  goto __pyx_L8_try_end;
4786
4785
  __pyx_L3_error:;
4787
4786
 
4788
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1021
4787
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1021
4789
4788
  * try:
4790
4789
  * _import_umath()
4791
4790
  * except Exception: # <<<<<<<<<<<<<<
@@ -4800,7 +4799,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
4800
4799
  __Pyx_XGOTREF(__pyx_t_6);
4801
4800
  __Pyx_XGOTREF(__pyx_t_7);
4802
4801
 
4803
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1022
4802
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1022
4804
4803
  * _import_umath()
4805
4804
  * except Exception:
4806
4805
  * raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
@@ -4825,7 +4824,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
4825
4824
  }
4826
4825
  goto __pyx_L5_except_error;
4827
4826
 
4828
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1019
4827
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1019
4829
4828
  *
4830
4829
  * cdef inline int import_ufunc() except -1:
4831
4830
  * try: # <<<<<<<<<<<<<<
@@ -4841,7 +4840,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
4841
4840
  __pyx_L8_try_end:;
4842
4841
  }
4843
4842
 
4844
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1018
4843
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1018
4845
4844
  * raise ImportError("numpy._core.umath failed to import")
4846
4845
  *
4847
4846
  * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
@@ -4866,7 +4865,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
4866
4865
  return __pyx_r;
4867
4866
  }
4868
4867
 
4869
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1025
4868
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1025
4870
4869
  *
4871
4870
  *
4872
4871
  * cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
@@ -4877,7 +4876,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
4877
4876
  static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
4878
4877
  int __pyx_r;
4879
4878
 
4880
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1037
4879
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1037
4881
4880
  * bool
4882
4881
  * """
4883
4882
  * return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type) # <<<<<<<<<<<<<<
@@ -4887,7 +4886,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
4887
4886
  __pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
4888
4887
  goto __pyx_L0;
4889
4888
 
4890
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1025
4889
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1025
4891
4890
  *
4892
4891
  *
4893
4892
  * cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
@@ -4900,7 +4899,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
4900
4899
  return __pyx_r;
4901
4900
  }
4902
4901
 
4903
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1040
4902
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1040
4904
4903
  *
4905
4904
  *
4906
4905
  * cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
@@ -4911,7 +4910,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
4911
4910
  static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
4912
4911
  int __pyx_r;
4913
4912
 
4914
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1052
4913
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1052
4915
4914
  * bool
4916
4915
  * """
4917
4916
  * return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type) # <<<<<<<<<<<<<<
@@ -4921,7 +4920,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
4921
4920
  __pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
4922
4921
  goto __pyx_L0;
4923
4922
 
4924
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1040
4923
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1040
4925
4924
  *
4926
4925
  *
4927
4926
  * cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
@@ -4934,7 +4933,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
4934
4933
  return __pyx_r;
4935
4934
  }
4936
4935
 
4937
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1055
4936
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1055
4938
4937
  *
4939
4938
  *
4940
4939
  * cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
@@ -4945,7 +4944,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
4945
4944
  static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
4946
4945
  npy_datetime __pyx_r;
4947
4946
 
4948
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1062
4947
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1062
4949
4948
  * also needed. That can be found using `get_datetime64_unit`.
4950
4949
  * """
4951
4950
  * return (<PyDatetimeScalarObject*>obj).obval # <<<<<<<<<<<<<<
@@ -4955,7 +4954,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
4955
4954
  __pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
4956
4955
  goto __pyx_L0;
4957
4956
 
4958
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1055
4957
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1055
4959
4958
  *
4960
4959
  *
4961
4960
  * cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
@@ -4968,7 +4967,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
4968
4967
  return __pyx_r;
4969
4968
  }
4970
4969
 
4971
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1065
4970
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1065
4972
4971
  *
4973
4972
  *
4974
4973
  * cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
@@ -4979,7 +4978,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
4979
4978
  static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
4980
4979
  npy_timedelta __pyx_r;
4981
4980
 
4982
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1069
4981
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1069
4983
4982
  * returns the int64 value underlying scalar numpy timedelta64 object
4984
4983
  * """
4985
4984
  * return (<PyTimedeltaScalarObject*>obj).obval # <<<<<<<<<<<<<<
@@ -4989,7 +4988,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
4989
4988
  __pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
4990
4989
  goto __pyx_L0;
4991
4990
 
4992
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1065
4991
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1065
4993
4992
  *
4994
4993
  *
4995
4994
  * cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
@@ -5002,7 +5001,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
5002
5001
  return __pyx_r;
5003
5002
  }
5004
5003
 
5005
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1072
5004
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1072
5006
5005
  *
5007
5006
  *
5008
5007
  * cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
@@ -5013,7 +5012,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
5013
5012
  static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
5014
5013
  NPY_DATETIMEUNIT __pyx_r;
5015
5014
 
5016
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1076
5015
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1076
5017
5016
  * returns the unit part of the dtype for a numpy datetime64 object.
5018
5017
  * """
5019
5018
  * return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base # <<<<<<<<<<<<<<
@@ -5023,7 +5022,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
5023
5022
  __pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
5024
5023
  goto __pyx_L0;
5025
5024
 
5026
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-abt1xj3a/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1072
5025
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-_m0bcxx9/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1072
5027
5026
  *
5028
5027
  *
5029
5028
  * cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
@@ -5036,7 +5035,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
5036
5035
  return __pyx_r;
5037
5036
  }
5038
5037
 
5039
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":6
5038
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":8
5040
5039
  * from libc.stdint cimport int32_t
5041
5040
  *
5042
5041
  * def seqdss(seqdata): # <<<<<<<<<<<<<<
@@ -5083,32 +5082,32 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
5083
5082
  {
5084
5083
  PyObject ** const __pyx_pyargnames[] = {&__pyx_mstate_global->__pyx_n_u_seqdata,0};
5085
5084
  const Py_ssize_t __pyx_kwds_len = (__pyx_kwds) ? __Pyx_NumKwargs_FASTCALL(__pyx_kwds) : 0;
5086
- if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0, 6, __pyx_L3_error)
5085
+ if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0, 8, __pyx_L3_error)
5087
5086
  if (__pyx_kwds_len > 0) {
5088
5087
  switch (__pyx_nargs) {
5089
5088
  case 1:
5090
5089
  values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
5091
- if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 6, __pyx_L3_error)
5090
+ if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 8, __pyx_L3_error)
5092
5091
  CYTHON_FALLTHROUGH;
5093
5092
  case 0: break;
5094
5093
  default: goto __pyx_L5_argtuple_error;
5095
5094
  }
5096
5095
  const Py_ssize_t kwd_pos_args = __pyx_nargs;
5097
- if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqdss", 0) < 0) __PYX_ERR(0, 6, __pyx_L3_error)
5096
+ if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqdss", 0) < 0) __PYX_ERR(0, 8, __pyx_L3_error)
5098
5097
  for (Py_ssize_t i = __pyx_nargs; i < 1; i++) {
5099
- if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqdss", 1, 1, 1, i); __PYX_ERR(0, 6, __pyx_L3_error) }
5098
+ if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqdss", 1, 1, 1, i); __PYX_ERR(0, 8, __pyx_L3_error) }
5100
5099
  }
5101
5100
  } else if (unlikely(__pyx_nargs != 1)) {
5102
5101
  goto __pyx_L5_argtuple_error;
5103
5102
  } else {
5104
5103
  values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
5105
- if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 6, __pyx_L3_error)
5104
+ if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 8, __pyx_L3_error)
5106
5105
  }
5107
5106
  __pyx_v_seqdata = values[0];
5108
5107
  }
5109
5108
  goto __pyx_L6_skip;
5110
5109
  __pyx_L5_argtuple_error:;
5111
- __Pyx_RaiseArgtupleInvalid("seqdss", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 6, __pyx_L3_error)
5110
+ __Pyx_RaiseArgtupleInvalid("seqdss", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 8, __pyx_L3_error)
5112
5111
  __pyx_L6_skip:;
5113
5112
  goto __pyx_L4_argument_unpacking_done;
5114
5113
  __pyx_L3_error:;
@@ -5130,7 +5129,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
5130
5129
  }
5131
5130
  static PyObject *__pyx_gb_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seqdss_2generator(__pyx_CoroutineObject *__pyx_generator, CYTHON_UNUSED PyThreadState *__pyx_tstate, PyObject *__pyx_sent_value); /* proto */
5132
5131
 
5133
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":24
5132
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":26
5134
5133
  *
5135
5134
  * cdef list groups = [row[boundary & (row >= 0)] for row, boundary in zip(ffill, boundaries)]
5136
5135
  * cdef int max_groups = max(len(g) for g in groups) # <<<<<<<<<<<<<<
@@ -5150,7 +5149,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seq
5150
5149
  if (unlikely(!__pyx_cur_scope)) {
5151
5150
  __pyx_cur_scope = ((struct __pyx_obj_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr *)Py_None);
5152
5151
  __Pyx_INCREF(Py_None);
5153
- __PYX_ERR(0, 24, __pyx_L1_error)
5152
+ __PYX_ERR(0, 26, __pyx_L1_error)
5154
5153
  } else {
5155
5154
  __Pyx_GOTREF((PyObject *)__pyx_cur_scope);
5156
5155
  }
@@ -5158,7 +5157,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seq
5158
5157
  __Pyx_INCREF(__pyx_cur_scope->__pyx_genexpr_arg_0);
5159
5158
  __Pyx_GIVEREF(__pyx_cur_scope->__pyx_genexpr_arg_0);
5160
5159
  {
5161
- __pyx_CoroutineObject *gen = __Pyx_Generator_New((__pyx_coroutine_body_t) __pyx_gb_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seqdss_2generator, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0]), (PyObject *) __pyx_cur_scope, __pyx_mstate_global->__pyx_n_u_genexpr, __pyx_mstate_global->__pyx_n_u_seqdss_locals_genexpr, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures); if (unlikely(!gen)) __PYX_ERR(0, 24, __pyx_L1_error)
5160
+ __pyx_CoroutineObject *gen = __Pyx_Generator_New((__pyx_coroutine_body_t) __pyx_gb_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seqdss_2generator, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0]), (PyObject *) __pyx_cur_scope, __pyx_mstate_global->__pyx_n_u_genexpr, __pyx_mstate_global->__pyx_n_u_seqdss_locals_genexpr, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures); if (unlikely(!gen)) __PYX_ERR(0, 26, __pyx_L1_error)
5162
5161
  __Pyx_DECREF(__pyx_cur_scope);
5163
5162
  __Pyx_RefNannyFinishContext();
5164
5163
  return (PyObject *) gen;
@@ -5197,29 +5196,29 @@ static PyObject *__pyx_gb_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seq
5197
5196
  __pyx_L3_first_run:;
5198
5197
  if (unlikely(__pyx_sent_value != Py_None)) {
5199
5198
  if (unlikely(__pyx_sent_value)) PyErr_SetString(PyExc_TypeError, "can't send non-None value to a just-started generator");
5200
- __PYX_ERR(0, 24, __pyx_L1_error)
5199
+ __PYX_ERR(0, 26, __pyx_L1_error)
5201
5200
  }
5202
- if (unlikely(!__pyx_cur_scope->__pyx_genexpr_arg_0)) { __Pyx_RaiseUnboundLocalError(".0"); __PYX_ERR(0, 24, __pyx_L1_error) }
5201
+ if (unlikely(!__pyx_cur_scope->__pyx_genexpr_arg_0)) { __Pyx_RaiseUnboundLocalError(".0"); __PYX_ERR(0, 26, __pyx_L1_error) }
5203
5202
  __pyx_t_1 = __pyx_cur_scope->__pyx_genexpr_arg_0; __Pyx_INCREF(__pyx_t_1);
5204
5203
  __pyx_t_2 = 0;
5205
5204
  for (;;) {
5206
5205
  {
5207
5206
  Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_1);
5208
5207
  #if !CYTHON_ASSUME_SAFE_SIZE
5209
- if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 24, __pyx_L1_error)
5208
+ if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 26, __pyx_L1_error)
5210
5209
  #endif
5211
5210
  if (__pyx_t_2 >= __pyx_temp) break;
5212
5211
  }
5213
5212
  __pyx_t_3 = __Pyx_PyList_GetItemRef(__pyx_t_1, __pyx_t_2);
5214
5213
  ++__pyx_t_2;
5215
- if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 24, __pyx_L1_error)
5214
+ if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 26, __pyx_L1_error)
5216
5215
  __Pyx_GOTREF(__pyx_t_3);
5217
5216
  __Pyx_XGOTREF(__pyx_cur_scope->__pyx_v_g);
5218
5217
  __Pyx_XDECREF_SET(__pyx_cur_scope->__pyx_v_g, __pyx_t_3);
5219
5218
  __Pyx_GIVEREF(__pyx_t_3);
5220
5219
  __pyx_t_3 = 0;
5221
- __pyx_t_4 = PyObject_Length(__pyx_cur_scope->__pyx_v_g); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(0, 24, __pyx_L1_error)
5222
- __pyx_t_3 = PyLong_FromSsize_t(__pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 24, __pyx_L1_error)
5220
+ __pyx_t_4 = PyObject_Length(__pyx_cur_scope->__pyx_v_g); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(0, 26, __pyx_L1_error)
5221
+ __pyx_t_3 = PyLong_FromSsize_t(__pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 26, __pyx_L1_error)
5223
5222
  __Pyx_GOTREF(__pyx_t_3);
5224
5223
  __pyx_r = __pyx_t_3;
5225
5224
  __pyx_t_3 = 0;
@@ -5237,7 +5236,7 @@ static PyObject *__pyx_gb_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seq
5237
5236
  __pyx_cur_scope->__pyx_t_0 = 0;
5238
5237
  __Pyx_XGOTREF(__pyx_t_1);
5239
5238
  __pyx_t_2 = __pyx_cur_scope->__pyx_t_1;
5240
- if (unlikely(!__pyx_sent_value)) __PYX_ERR(0, 24, __pyx_L1_error)
5239
+ if (unlikely(!__pyx_sent_value)) __PYX_ERR(0, 26, __pyx_L1_error)
5241
5240
  }
5242
5241
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5243
5242
  CYTHON_MAYBE_UNUSED_VAR(__pyx_cur_scope);
@@ -5263,7 +5262,7 @@ static PyObject *__pyx_gb_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seq
5263
5262
  return __pyx_r;
5264
5263
  }
5265
5264
 
5266
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":6
5265
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":8
5267
5266
  * from libc.stdint cimport int32_t
5268
5267
  *
5269
5268
  * def seqdss(seqdata): # <<<<<<<<<<<<<<
@@ -5336,21 +5335,21 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5336
5335
  __pyx_pybuffernd_result.data = NULL;
5337
5336
  __pyx_pybuffernd_result.rcbuffer = &__pyx_pybuffer_result;
5338
5337
 
5339
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":7
5338
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":9
5340
5339
  *
5341
5340
  * def seqdss(seqdata):
5342
5341
  * if not isinstance(seqdata, SequenceData): # <<<<<<<<<<<<<<
5343
5342
  * raise ValueError("[!] data is NOT a sequence object, see SequenceData to create one.")
5344
5343
  *
5345
5344
  */
5346
- __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 7, __pyx_L1_error)
5345
+ __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 9, __pyx_L1_error)
5347
5346
  __Pyx_GOTREF(__pyx_t_1);
5348
- __pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_1); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0, 7, __pyx_L1_error)
5347
+ __pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_1); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0, 9, __pyx_L1_error)
5349
5348
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5350
5349
  __pyx_t_3 = (!__pyx_t_2);
5351
5350
  if (unlikely(__pyx_t_3)) {
5352
5351
 
5353
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":8
5352
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":10
5354
5353
  * def seqdss(seqdata):
5355
5354
  * if not isinstance(seqdata, SequenceData):
5356
5355
  * raise ValueError("[!] data is NOT a sequence object, see SequenceData to create one.") # <<<<<<<<<<<<<<
@@ -5366,14 +5365,14 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5366
5365
  __pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_5, __pyx_callargs+__pyx_t_6, (2-__pyx_t_6) | (__pyx_t_6*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET));
5367
5366
  __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
5368
5367
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
5369
- if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 8, __pyx_L1_error)
5368
+ if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 10, __pyx_L1_error)
5370
5369
  __Pyx_GOTREF(__pyx_t_1);
5371
5370
  }
5372
5371
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
5373
5372
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5374
- __PYX_ERR(0, 8, __pyx_L1_error)
5373
+ __PYX_ERR(0, 10, __pyx_L1_error)
5375
5374
 
5376
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":7
5375
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":9
5377
5376
  *
5378
5377
  * def seqdss(seqdata):
5379
5378
  * if not isinstance(seqdata, SequenceData): # <<<<<<<<<<<<<<
@@ -5382,49 +5381,49 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5382
5381
  */
5383
5382
  }
5384
5383
 
5385
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":10
5384
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":12
5386
5385
  * raise ValueError("[!] data is NOT a sequence object, see SequenceData to create one.")
5387
5386
  *
5388
5387
  * cdef cnp.ndarray[int32_t, ndim=2] seqdatanum = seqdata.values.astype(np.int32, copy=False) # <<<<<<<<<<<<<<
5389
5388
  * cdef int n = seqdatanum.shape[0], m = seqdatanum.shape[1]
5390
5389
  * cdef int i, j
5391
5390
  */
5392
- __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_seqdata, __pyx_mstate_global->__pyx_n_u_values); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 10, __pyx_L1_error)
5391
+ __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_seqdata, __pyx_mstate_global->__pyx_n_u_values); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 12, __pyx_L1_error)
5393
5392
  __Pyx_GOTREF(__pyx_t_4);
5394
5393
  __pyx_t_5 = __pyx_t_4;
5395
5394
  __Pyx_INCREF(__pyx_t_5);
5396
- __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 10, __pyx_L1_error)
5395
+ __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 12, __pyx_L1_error)
5397
5396
  __Pyx_GOTREF(__pyx_t_7);
5398
- __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 10, __pyx_L1_error)
5397
+ __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 12, __pyx_L1_error)
5399
5398
  __Pyx_GOTREF(__pyx_t_8);
5400
5399
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
5401
5400
  __pyx_t_6 = 0;
5402
5401
  {
5403
5402
  PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_5, __pyx_t_8};
5404
- __pyx_t_7 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 10, __pyx_L1_error)
5403
+ __pyx_t_7 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 12, __pyx_L1_error)
5405
5404
  __Pyx_GOTREF(__pyx_t_7);
5406
- if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_copy, Py_False, __pyx_t_7, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 10, __pyx_L1_error)
5405
+ if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_copy, Py_False, __pyx_t_7, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 12, __pyx_L1_error)
5407
5406
  __pyx_t_1 = __Pyx_Object_VectorcallMethod_CallFromBuilder(__pyx_mstate_global->__pyx_n_u_astype, __pyx_callargs+__pyx_t_6, (2-__pyx_t_6) | (1*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_7);
5408
5407
  __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
5409
5408
  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
5410
5409
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
5411
5410
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
5412
- if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 10, __pyx_L1_error)
5411
+ if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 12, __pyx_L1_error)
5413
5412
  __Pyx_GOTREF(__pyx_t_1);
5414
5413
  }
5415
- if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 10, __pyx_L1_error)
5414
+ if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 12, __pyx_L1_error)
5416
5415
  {
5417
5416
  __Pyx_BufFmt_StackElem __pyx_stack[1];
5418
5417
  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_seqdatanum.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_nn_int32_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) {
5419
5418
  __pyx_v_seqdatanum = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_seqdatanum.rcbuffer->pybuffer.buf = NULL;
5420
- __PYX_ERR(0, 10, __pyx_L1_error)
5419
+ __PYX_ERR(0, 12, __pyx_L1_error)
5421
5420
  } else {__pyx_pybuffernd_seqdatanum.diminfo[0].strides = __pyx_pybuffernd_seqdatanum.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_seqdatanum.diminfo[0].shape = __pyx_pybuffernd_seqdatanum.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_seqdatanum.diminfo[1].strides = __pyx_pybuffernd_seqdatanum.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_seqdatanum.diminfo[1].shape = __pyx_pybuffernd_seqdatanum.rcbuffer->pybuffer.shape[1];
5422
5421
  }
5423
5422
  }
5424
5423
  __pyx_v_seqdatanum = ((PyArrayObject *)__pyx_t_1);
5425
5424
  __pyx_t_1 = 0;
5426
5425
 
5427
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":11
5426
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":13
5428
5427
  *
5429
5428
  * cdef cnp.ndarray[int32_t, ndim=2] seqdatanum = seqdata.values.astype(np.int32, copy=False)
5430
5429
  * cdef int n = seqdatanum.shape[0], m = seqdatanum.shape[1] # <<<<<<<<<<<<<<
@@ -5434,7 +5433,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5434
5433
  __pyx_v_n = (__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_seqdatanum))[0]);
5435
5434
  __pyx_v_m = (__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_seqdatanum))[1]);
5436
5435
 
5437
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":14
5436
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":16
5438
5437
  * cdef int i, j
5439
5438
  *
5440
5439
  * cdef cnp.ndarray[int32_t, ndim=2] ffill = seqdatanum # <<<<<<<<<<<<<<
@@ -5445,14 +5444,14 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5445
5444
  __Pyx_BufFmt_StackElem __pyx_stack[1];
5446
5445
  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_ffill.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_v_seqdatanum), &__Pyx_TypeInfo_nn_int32_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) {
5447
5446
  __pyx_v_ffill = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_ffill.rcbuffer->pybuffer.buf = NULL;
5448
- __PYX_ERR(0, 14, __pyx_L1_error)
5447
+ __PYX_ERR(0, 16, __pyx_L1_error)
5449
5448
  } else {__pyx_pybuffernd_ffill.diminfo[0].strides = __pyx_pybuffernd_ffill.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_ffill.diminfo[0].shape = __pyx_pybuffernd_ffill.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_ffill.diminfo[1].strides = __pyx_pybuffernd_ffill.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_ffill.diminfo[1].shape = __pyx_pybuffernd_ffill.rcbuffer->pybuffer.shape[1];
5450
5449
  }
5451
5450
  }
5452
5451
  __Pyx_INCREF((PyObject *)__pyx_v_seqdatanum);
5453
5452
  __pyx_v_ffill = ((PyArrayObject *)__pyx_v_seqdatanum);
5454
5453
 
5455
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":15
5454
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":17
5456
5455
  *
5457
5456
  * cdef cnp.ndarray[int32_t, ndim=2] ffill = seqdatanum
5458
5457
  * cdef cnp.ndarray[char, ndim=2] boundaries = np.ones((n, 1), dtype=bool) # Fixed here # <<<<<<<<<<<<<<
@@ -5460,20 +5459,20 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5460
5459
  * for j in range(1, m):
5461
5460
  */
5462
5461
  __pyx_t_4 = NULL;
5463
- __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 15, __pyx_L1_error)
5462
+ __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 17, __pyx_L1_error)
5464
5463
  __Pyx_GOTREF(__pyx_t_7);
5465
- __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_ones); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 15, __pyx_L1_error)
5464
+ __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_ones); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 17, __pyx_L1_error)
5466
5465
  __Pyx_GOTREF(__pyx_t_8);
5467
5466
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
5468
- __pyx_t_7 = __Pyx_PyLong_From_int(__pyx_v_n); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 15, __pyx_L1_error)
5467
+ __pyx_t_7 = __Pyx_PyLong_From_int(__pyx_v_n); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 17, __pyx_L1_error)
5469
5468
  __Pyx_GOTREF(__pyx_t_7);
5470
- __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 15, __pyx_L1_error)
5469
+ __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 17, __pyx_L1_error)
5471
5470
  __Pyx_GOTREF(__pyx_t_5);
5472
5471
  __Pyx_GIVEREF(__pyx_t_7);
5473
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_7) != (0)) __PYX_ERR(0, 15, __pyx_L1_error);
5472
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_7) != (0)) __PYX_ERR(0, 17, __pyx_L1_error);
5474
5473
  __Pyx_INCREF(__pyx_mstate_global->__pyx_int_1);
5475
5474
  __Pyx_GIVEREF(__pyx_mstate_global->__pyx_int_1);
5476
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_mstate_global->__pyx_int_1) != (0)) __PYX_ERR(0, 15, __pyx_L1_error);
5475
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_mstate_global->__pyx_int_1) != (0)) __PYX_ERR(0, 17, __pyx_L1_error);
5477
5476
  __pyx_t_7 = 0;
5478
5477
  __pyx_t_6 = 1;
5479
5478
  #if CYTHON_UNPACK_METHODS
@@ -5489,30 +5488,30 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5489
5488
  #endif
5490
5489
  {
5491
5490
  PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_4, __pyx_t_5};
5492
- __pyx_t_7 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 15, __pyx_L1_error)
5491
+ __pyx_t_7 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 17, __pyx_L1_error)
5493
5492
  __Pyx_GOTREF(__pyx_t_7);
5494
- if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_dtype, ((PyObject*)&PyBool_Type), __pyx_t_7, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 15, __pyx_L1_error)
5493
+ if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_dtype, ((PyObject*)&PyBool_Type), __pyx_t_7, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 17, __pyx_L1_error)
5495
5494
  __pyx_t_1 = __Pyx_Object_Vectorcall_CallFromBuilder(__pyx_t_8, __pyx_callargs+__pyx_t_6, (2-__pyx_t_6) | (__pyx_t_6*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_7);
5496
5495
  __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
5497
5496
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
5498
5497
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
5499
5498
  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
5500
- if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
5499
+ if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 17, __pyx_L1_error)
5501
5500
  __Pyx_GOTREF(__pyx_t_1);
5502
5501
  }
5503
- if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 15, __pyx_L1_error)
5502
+ if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 17, __pyx_L1_error)
5504
5503
  {
5505
5504
  __Pyx_BufFmt_StackElem __pyx_stack[1];
5506
5505
  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_boundaries.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_char, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) {
5507
5506
  __pyx_v_boundaries = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_boundaries.rcbuffer->pybuffer.buf = NULL;
5508
- __PYX_ERR(0, 15, __pyx_L1_error)
5507
+ __PYX_ERR(0, 17, __pyx_L1_error)
5509
5508
  } else {__pyx_pybuffernd_boundaries.diminfo[0].strides = __pyx_pybuffernd_boundaries.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_boundaries.diminfo[0].shape = __pyx_pybuffernd_boundaries.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_boundaries.diminfo[1].strides = __pyx_pybuffernd_boundaries.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_boundaries.diminfo[1].shape = __pyx_pybuffernd_boundaries.rcbuffer->pybuffer.shape[1];
5510
5509
  }
5511
5510
  }
5512
5511
  __pyx_v_boundaries = ((PyArrayObject *)__pyx_t_1);
5513
5512
  __pyx_t_1 = 0;
5514
5513
 
5515
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":17
5514
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":19
5516
5515
  * cdef cnp.ndarray[char, ndim=2] boundaries = np.ones((n, 1), dtype=bool) # Fixed here
5517
5516
  *
5518
5517
  * for j in range(1, m): # <<<<<<<<<<<<<<
@@ -5524,67 +5523,67 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5524
5523
  for (__pyx_t_11 = 1; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
5525
5524
  __pyx_v_j = __pyx_t_11;
5526
5525
 
5527
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":18
5526
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":20
5528
5527
  *
5529
5528
  * for j in range(1, m):
5530
5529
  * mask = (ffill[:, j] < 0) # <<<<<<<<<<<<<<
5531
5530
  * ffill[mask, j] = ffill[mask, j - 1]
5532
5531
  *
5533
5532
  */
5534
- __pyx_t_1 = __Pyx_PyLong_From_int(__pyx_v_j); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 18, __pyx_L1_error)
5533
+ __pyx_t_1 = __Pyx_PyLong_From_int(__pyx_v_j); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 20, __pyx_L1_error)
5535
5534
  __Pyx_GOTREF(__pyx_t_1);
5536
- __pyx_t_8 = PyTuple_New(2); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 18, __pyx_L1_error)
5535
+ __pyx_t_8 = PyTuple_New(2); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 20, __pyx_L1_error)
5537
5536
  __Pyx_GOTREF(__pyx_t_8);
5538
5537
  __Pyx_INCREF(__pyx_mstate_global->__pyx_slice[0]);
5539
5538
  __Pyx_GIVEREF(__pyx_mstate_global->__pyx_slice[0]);
5540
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_mstate_global->__pyx_slice[0]) != (0)) __PYX_ERR(0, 18, __pyx_L1_error);
5539
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_mstate_global->__pyx_slice[0]) != (0)) __PYX_ERR(0, 20, __pyx_L1_error);
5541
5540
  __Pyx_GIVEREF(__pyx_t_1);
5542
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_t_1) != (0)) __PYX_ERR(0, 18, __pyx_L1_error);
5541
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_t_1) != (0)) __PYX_ERR(0, 20, __pyx_L1_error);
5543
5542
  __pyx_t_1 = 0;
5544
- __pyx_t_1 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_ffill), __pyx_t_8); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 18, __pyx_L1_error)
5543
+ __pyx_t_1 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_ffill), __pyx_t_8); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 20, __pyx_L1_error)
5545
5544
  __Pyx_GOTREF(__pyx_t_1);
5546
5545
  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
5547
- __pyx_t_8 = PyObject_RichCompare(__pyx_t_1, __pyx_mstate_global->__pyx_int_0, Py_LT); __Pyx_XGOTREF(__pyx_t_8); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 18, __pyx_L1_error)
5546
+ __pyx_t_8 = PyObject_RichCompare(__pyx_t_1, __pyx_mstate_global->__pyx_int_0, Py_LT); __Pyx_XGOTREF(__pyx_t_8); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 20, __pyx_L1_error)
5548
5547
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5549
5548
  __Pyx_XDECREF_SET(__pyx_v_mask, __pyx_t_8);
5550
5549
  __pyx_t_8 = 0;
5551
5550
 
5552
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":19
5551
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":21
5553
5552
  * for j in range(1, m):
5554
5553
  * mask = (ffill[:, j] < 0)
5555
5554
  * ffill[mask, j] = ffill[mask, j - 1] # <<<<<<<<<<<<<<
5556
5555
  *
5557
5556
  * boundaries = np.concatenate([boundaries, ffill[:, 1:] != ffill[:, :-1]], axis=1)
5558
5557
  */
5559
- __pyx_t_8 = __Pyx_PyLong_From_long((__pyx_v_j - 1)); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 19, __pyx_L1_error)
5558
+ __pyx_t_8 = __Pyx_PyLong_From_long((__pyx_v_j - 1)); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 21, __pyx_L1_error)
5560
5559
  __Pyx_GOTREF(__pyx_t_8);
5561
- __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 19, __pyx_L1_error)
5560
+ __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 21, __pyx_L1_error)
5562
5561
  __Pyx_GOTREF(__pyx_t_1);
5563
5562
  __Pyx_INCREF(__pyx_v_mask);
5564
5563
  __Pyx_GIVEREF(__pyx_v_mask);
5565
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_v_mask) != (0)) __PYX_ERR(0, 19, __pyx_L1_error);
5564
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_v_mask) != (0)) __PYX_ERR(0, 21, __pyx_L1_error);
5566
5565
  __Pyx_GIVEREF(__pyx_t_8);
5567
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_8) != (0)) __PYX_ERR(0, 19, __pyx_L1_error);
5566
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_8) != (0)) __PYX_ERR(0, 21, __pyx_L1_error);
5568
5567
  __pyx_t_8 = 0;
5569
- __pyx_t_8 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_ffill), __pyx_t_1); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 19, __pyx_L1_error)
5568
+ __pyx_t_8 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_ffill), __pyx_t_1); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 21, __pyx_L1_error)
5570
5569
  __Pyx_GOTREF(__pyx_t_8);
5571
5570
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5572
- __pyx_t_1 = __Pyx_PyLong_From_int(__pyx_v_j); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 19, __pyx_L1_error)
5571
+ __pyx_t_1 = __Pyx_PyLong_From_int(__pyx_v_j); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 21, __pyx_L1_error)
5573
5572
  __Pyx_GOTREF(__pyx_t_1);
5574
- __pyx_t_7 = PyTuple_New(2); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 19, __pyx_L1_error)
5573
+ __pyx_t_7 = PyTuple_New(2); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 21, __pyx_L1_error)
5575
5574
  __Pyx_GOTREF(__pyx_t_7);
5576
5575
  __Pyx_INCREF(__pyx_v_mask);
5577
5576
  __Pyx_GIVEREF(__pyx_v_mask);
5578
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_v_mask) != (0)) __PYX_ERR(0, 19, __pyx_L1_error);
5577
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_v_mask) != (0)) __PYX_ERR(0, 21, __pyx_L1_error);
5579
5578
  __Pyx_GIVEREF(__pyx_t_1);
5580
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_1) != (0)) __PYX_ERR(0, 19, __pyx_L1_error);
5579
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_1) != (0)) __PYX_ERR(0, 21, __pyx_L1_error);
5581
5580
  __pyx_t_1 = 0;
5582
- if (unlikely((PyObject_SetItem(((PyObject *)__pyx_v_ffill), __pyx_t_7, __pyx_t_8) < 0))) __PYX_ERR(0, 19, __pyx_L1_error)
5581
+ if (unlikely((PyObject_SetItem(((PyObject *)__pyx_v_ffill), __pyx_t_7, __pyx_t_8) < 0))) __PYX_ERR(0, 21, __pyx_L1_error)
5583
5582
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
5584
5583
  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
5585
5584
  }
5586
5585
 
5587
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":21
5586
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":23
5588
5587
  * ffill[mask, j] = ffill[mask, j - 1]
5589
5588
  *
5590
5589
  * boundaries = np.concatenate([boundaries, ffill[:, 1:] != ffill[:, :-1]], axis=1) # <<<<<<<<<<<<<<
@@ -5592,25 +5591,25 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5592
5591
  * cdef list groups = [row[boundary & (row >= 0)] for row, boundary in zip(ffill, boundaries)]
5593
5592
  */
5594
5593
  __pyx_t_7 = NULL;
5595
- __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 21, __pyx_L1_error)
5594
+ __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 23, __pyx_L1_error)
5596
5595
  __Pyx_GOTREF(__pyx_t_1);
5597
- __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_concatenate); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 21, __pyx_L1_error)
5596
+ __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_concatenate); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 23, __pyx_L1_error)
5598
5597
  __Pyx_GOTREF(__pyx_t_5);
5599
5598
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5600
- __pyx_t_1 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_ffill), __pyx_mstate_global->__pyx_tuple[0]); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 21, __pyx_L1_error)
5599
+ __pyx_t_1 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_ffill), __pyx_mstate_global->__pyx_tuple[0]); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 23, __pyx_L1_error)
5601
5600
  __Pyx_GOTREF(__pyx_t_1);
5602
- __pyx_t_4 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_ffill), __pyx_mstate_global->__pyx_tuple[1]); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 21, __pyx_L1_error)
5601
+ __pyx_t_4 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_ffill), __pyx_mstate_global->__pyx_tuple[1]); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 23, __pyx_L1_error)
5603
5602
  __Pyx_GOTREF(__pyx_t_4);
5604
- __pyx_t_12 = PyObject_RichCompare(__pyx_t_1, __pyx_t_4, Py_NE); __Pyx_XGOTREF(__pyx_t_12); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 21, __pyx_L1_error)
5603
+ __pyx_t_12 = PyObject_RichCompare(__pyx_t_1, __pyx_t_4, Py_NE); __Pyx_XGOTREF(__pyx_t_12); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 23, __pyx_L1_error)
5605
5604
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5606
5605
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
5607
- __pyx_t_4 = PyList_New(2); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 21, __pyx_L1_error)
5606
+ __pyx_t_4 = PyList_New(2); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 23, __pyx_L1_error)
5608
5607
  __Pyx_GOTREF(__pyx_t_4);
5609
5608
  __Pyx_INCREF((PyObject *)__pyx_v_boundaries);
5610
5609
  __Pyx_GIVEREF((PyObject *)__pyx_v_boundaries);
5611
- if (__Pyx_PyList_SET_ITEM(__pyx_t_4, 0, ((PyObject *)__pyx_v_boundaries)) != (0)) __PYX_ERR(0, 21, __pyx_L1_error);
5610
+ if (__Pyx_PyList_SET_ITEM(__pyx_t_4, 0, ((PyObject *)__pyx_v_boundaries)) != (0)) __PYX_ERR(0, 23, __pyx_L1_error);
5612
5611
  __Pyx_GIVEREF(__pyx_t_12);
5613
- if (__Pyx_PyList_SET_ITEM(__pyx_t_4, 1, __pyx_t_12) != (0)) __PYX_ERR(0, 21, __pyx_L1_error);
5612
+ if (__Pyx_PyList_SET_ITEM(__pyx_t_4, 1, __pyx_t_12) != (0)) __PYX_ERR(0, 23, __pyx_L1_error);
5614
5613
  __pyx_t_12 = 0;
5615
5614
  __pyx_t_6 = 1;
5616
5615
  #if CYTHON_UNPACK_METHODS
@@ -5626,18 +5625,18 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5626
5625
  #endif
5627
5626
  {
5628
5627
  PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_7, __pyx_t_4};
5629
- __pyx_t_12 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 21, __pyx_L1_error)
5628
+ __pyx_t_12 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 23, __pyx_L1_error)
5630
5629
  __Pyx_GOTREF(__pyx_t_12);
5631
- if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_12, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 21, __pyx_L1_error)
5630
+ if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_12, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 23, __pyx_L1_error)
5632
5631
  __pyx_t_8 = __Pyx_Object_Vectorcall_CallFromBuilder(__pyx_t_5, __pyx_callargs+__pyx_t_6, (2-__pyx_t_6) | (__pyx_t_6*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_12);
5633
5632
  __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
5634
5633
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
5635
5634
  __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
5636
5635
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
5637
- if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 21, __pyx_L1_error)
5636
+ if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 23, __pyx_L1_error)
5638
5637
  __Pyx_GOTREF(__pyx_t_8);
5639
5638
  }
5640
- if (!(likely(((__pyx_t_8) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_8, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 21, __pyx_L1_error)
5639
+ if (!(likely(((__pyx_t_8) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_8, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 23, __pyx_L1_error)
5641
5640
  {
5642
5641
  __Pyx_BufFmt_StackElem __pyx_stack[1];
5643
5642
  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_boundaries.rcbuffer->pybuffer);
@@ -5653,12 +5652,12 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5653
5652
  __pyx_t_13 = __pyx_t_14 = __pyx_t_15 = 0;
5654
5653
  }
5655
5654
  __pyx_pybuffernd_boundaries.diminfo[0].strides = __pyx_pybuffernd_boundaries.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_boundaries.diminfo[0].shape = __pyx_pybuffernd_boundaries.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_boundaries.diminfo[1].strides = __pyx_pybuffernd_boundaries.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_boundaries.diminfo[1].shape = __pyx_pybuffernd_boundaries.rcbuffer->pybuffer.shape[1];
5656
- if (unlikely((__pyx_t_9 < 0))) __PYX_ERR(0, 21, __pyx_L1_error)
5655
+ if (unlikely((__pyx_t_9 < 0))) __PYX_ERR(0, 23, __pyx_L1_error)
5657
5656
  }
5658
5657
  __Pyx_DECREF_SET(__pyx_v_boundaries, ((PyArrayObject *)__pyx_t_8));
5659
5658
  __pyx_t_8 = 0;
5660
5659
 
5661
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":23
5660
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":25
5662
5661
  * boundaries = np.concatenate([boundaries, ffill[:, 1:] != ffill[:, :-1]], axis=1)
5663
5662
  *
5664
5663
  * cdef list groups = [row[boundary & (row >= 0)] for row, boundary in zip(ffill, boundaries)] # <<<<<<<<<<<<<<
@@ -5666,7 +5665,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5666
5665
  *
5667
5666
  */
5668
5667
  { /* enter inner scope */
5669
- __pyx_t_8 = PyList_New(0); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 23, __pyx_L8_error)
5668
+ __pyx_t_8 = PyList_New(0); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 25, __pyx_L8_error)
5670
5669
  __Pyx_GOTREF(__pyx_t_8);
5671
5670
  __pyx_t_12 = NULL;
5672
5671
  __Pyx_INCREF(__pyx_builtin_zip);
@@ -5677,7 +5676,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5677
5676
  __pyx_t_5 = __Pyx_PyObject_FastCall(__pyx_t_4, __pyx_callargs+__pyx_t_6, (3-__pyx_t_6) | (__pyx_t_6*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET));
5678
5677
  __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
5679
5678
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
5680
- if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 23, __pyx_L8_error)
5679
+ if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 25, __pyx_L8_error)
5681
5680
  __Pyx_GOTREF(__pyx_t_5);
5682
5681
  }
5683
5682
  if (likely(PyList_CheckExact(__pyx_t_5)) || PyTuple_CheckExact(__pyx_t_5)) {
@@ -5685,9 +5684,9 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5685
5684
  __pyx_t_16 = 0;
5686
5685
  __pyx_t_17 = NULL;
5687
5686
  } else {
5688
- __pyx_t_16 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 23, __pyx_L8_error)
5687
+ __pyx_t_16 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 25, __pyx_L8_error)
5689
5688
  __Pyx_GOTREF(__pyx_t_4);
5690
- __pyx_t_17 = (CYTHON_COMPILING_IN_LIMITED_API) ? PyIter_Next : __Pyx_PyObject_GetIterNextFunc(__pyx_t_4); if (unlikely(!__pyx_t_17)) __PYX_ERR(0, 23, __pyx_L8_error)
5689
+ __pyx_t_17 = (CYTHON_COMPILING_IN_LIMITED_API) ? PyIter_Next : __Pyx_PyObject_GetIterNextFunc(__pyx_t_4); if (unlikely(!__pyx_t_17)) __PYX_ERR(0, 25, __pyx_L8_error)
5691
5690
  }
5692
5691
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
5693
5692
  for (;;) {
@@ -5696,7 +5695,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5696
5695
  {
5697
5696
  Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_4);
5698
5697
  #if !CYTHON_ASSUME_SAFE_SIZE
5699
- if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 23, __pyx_L8_error)
5698
+ if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 25, __pyx_L8_error)
5700
5699
  #endif
5701
5700
  if (__pyx_t_16 >= __pyx_temp) break;
5702
5701
  }
@@ -5706,7 +5705,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5706
5705
  {
5707
5706
  Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_4);
5708
5707
  #if !CYTHON_ASSUME_SAFE_SIZE
5709
- if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 23, __pyx_L8_error)
5708
+ if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 25, __pyx_L8_error)
5710
5709
  #endif
5711
5710
  if (__pyx_t_16 >= __pyx_temp) break;
5712
5711
  }
@@ -5717,13 +5716,13 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5717
5716
  #endif
5718
5717
  ++__pyx_t_16;
5719
5718
  }
5720
- if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 23, __pyx_L8_error)
5719
+ if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 25, __pyx_L8_error)
5721
5720
  } else {
5722
5721
  __pyx_t_5 = __pyx_t_17(__pyx_t_4);
5723
5722
  if (unlikely(!__pyx_t_5)) {
5724
5723
  PyObject* exc_type = PyErr_Occurred();
5725
5724
  if (exc_type) {
5726
- if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) __PYX_ERR(0, 23, __pyx_L8_error)
5725
+ if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) __PYX_ERR(0, 25, __pyx_L8_error)
5727
5726
  PyErr_Clear();
5728
5727
  }
5729
5728
  break;
@@ -5736,7 +5735,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5736
5735
  if (unlikely(size != 2)) {
5737
5736
  if (size > 2) __Pyx_RaiseTooManyValuesError(2);
5738
5737
  else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
5739
- __PYX_ERR(0, 23, __pyx_L8_error)
5738
+ __PYX_ERR(0, 25, __pyx_L8_error)
5740
5739
  }
5741
5740
  #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
5742
5741
  if (likely(PyTuple_CheckExact(sequence))) {
@@ -5746,22 +5745,22 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5746
5745
  __Pyx_INCREF(__pyx_t_7);
5747
5746
  } else {
5748
5747
  __pyx_t_12 = __Pyx_PyList_GetItemRef(sequence, 0);
5749
- if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 23, __pyx_L8_error)
5748
+ if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 25, __pyx_L8_error)
5750
5749
  __Pyx_XGOTREF(__pyx_t_12);
5751
5750
  __pyx_t_7 = __Pyx_PyList_GetItemRef(sequence, 1);
5752
- if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 23, __pyx_L8_error)
5751
+ if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 25, __pyx_L8_error)
5753
5752
  __Pyx_XGOTREF(__pyx_t_7);
5754
5753
  }
5755
5754
  #else
5756
- __pyx_t_12 = __Pyx_PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 23, __pyx_L8_error)
5755
+ __pyx_t_12 = __Pyx_PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 25, __pyx_L8_error)
5757
5756
  __Pyx_GOTREF(__pyx_t_12);
5758
- __pyx_t_7 = __Pyx_PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 23, __pyx_L8_error)
5757
+ __pyx_t_7 = __Pyx_PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 25, __pyx_L8_error)
5759
5758
  __Pyx_GOTREF(__pyx_t_7);
5760
5759
  #endif
5761
5760
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
5762
5761
  } else {
5763
5762
  Py_ssize_t index = -1;
5764
- __pyx_t_1 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 23, __pyx_L8_error)
5763
+ __pyx_t_1 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 25, __pyx_L8_error)
5765
5764
  __Pyx_GOTREF(__pyx_t_1);
5766
5765
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
5767
5766
  __pyx_t_18 = (CYTHON_COMPILING_IN_LIMITED_API) ? PyIter_Next : __Pyx_PyObject_GetIterNextFunc(__pyx_t_1);
@@ -5769,7 +5768,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5769
5768
  __Pyx_GOTREF(__pyx_t_12);
5770
5769
  index = 1; __pyx_t_7 = __pyx_t_18(__pyx_t_1); if (unlikely(!__pyx_t_7)) goto __pyx_L11_unpacking_failed;
5771
5770
  __Pyx_GOTREF(__pyx_t_7);
5772
- if (__Pyx_IternextUnpackEndCheck(__pyx_t_18(__pyx_t_1), 2) < 0) __PYX_ERR(0, 23, __pyx_L8_error)
5771
+ if (__Pyx_IternextUnpackEndCheck(__pyx_t_18(__pyx_t_1), 2) < 0) __PYX_ERR(0, 25, __pyx_L8_error)
5773
5772
  __pyx_t_18 = NULL;
5774
5773
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5775
5774
  goto __pyx_L12_unpacking_done;
@@ -5777,21 +5776,21 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5777
5776
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5778
5777
  __pyx_t_18 = NULL;
5779
5778
  if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
5780
- __PYX_ERR(0, 23, __pyx_L8_error)
5779
+ __PYX_ERR(0, 25, __pyx_L8_error)
5781
5780
  __pyx_L12_unpacking_done:;
5782
5781
  }
5783
5782
  __Pyx_XDECREF_SET(__pyx_7genexpr__pyx_v_row, __pyx_t_12);
5784
5783
  __pyx_t_12 = 0;
5785
5784
  __Pyx_XDECREF_SET(__pyx_7genexpr__pyx_v_boundary, __pyx_t_7);
5786
5785
  __pyx_t_7 = 0;
5787
- __pyx_t_5 = PyObject_RichCompare(__pyx_7genexpr__pyx_v_row, __pyx_mstate_global->__pyx_int_0, Py_GE); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 23, __pyx_L8_error)
5788
- __pyx_t_7 = PyNumber_And(__pyx_7genexpr__pyx_v_boundary, __pyx_t_5); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 23, __pyx_L8_error)
5786
+ __pyx_t_5 = PyObject_RichCompare(__pyx_7genexpr__pyx_v_row, __pyx_mstate_global->__pyx_int_0, Py_GE); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 25, __pyx_L8_error)
5787
+ __pyx_t_7 = PyNumber_And(__pyx_7genexpr__pyx_v_boundary, __pyx_t_5); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 25, __pyx_L8_error)
5789
5788
  __Pyx_GOTREF(__pyx_t_7);
5790
5789
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
5791
- __pyx_t_5 = __Pyx_PyObject_GetItem(__pyx_7genexpr__pyx_v_row, __pyx_t_7); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 23, __pyx_L8_error)
5790
+ __pyx_t_5 = __Pyx_PyObject_GetItem(__pyx_7genexpr__pyx_v_row, __pyx_t_7); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 25, __pyx_L8_error)
5792
5791
  __Pyx_GOTREF(__pyx_t_5);
5793
5792
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
5794
- if (unlikely(__Pyx_ListComp_Append(__pyx_t_8, (PyObject*)__pyx_t_5))) __PYX_ERR(0, 23, __pyx_L8_error)
5793
+ if (unlikely(__Pyx_ListComp_Append(__pyx_t_8, (PyObject*)__pyx_t_5))) __PYX_ERR(0, 25, __pyx_L8_error)
5795
5794
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
5796
5795
  }
5797
5796
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
@@ -5807,7 +5806,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5807
5806
  __pyx_v_groups = ((PyObject*)__pyx_t_8);
5808
5807
  __pyx_t_8 = 0;
5809
5808
 
5810
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":24
5809
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":26
5811
5810
  *
5812
5811
  * cdef list groups = [row[boundary & (row >= 0)] for row, boundary in zip(ffill, boundaries)]
5813
5812
  * cdef int max_groups = max(len(g) for g in groups) # <<<<<<<<<<<<<<
@@ -5817,7 +5816,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5817
5816
  __pyx_t_4 = NULL;
5818
5817
  __Pyx_INCREF(__pyx_builtin_max);
5819
5818
  __pyx_t_5 = __pyx_builtin_max;
5820
- __pyx_t_7 = __pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seqdss_genexpr(NULL, __pyx_v_groups); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 24, __pyx_L1_error)
5819
+ __pyx_t_7 = __pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_6seqdss_genexpr(NULL, __pyx_v_groups); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 26, __pyx_L1_error)
5821
5820
  __Pyx_GOTREF(__pyx_t_7);
5822
5821
  __pyx_t_6 = 1;
5823
5822
  {
@@ -5826,14 +5825,14 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5826
5825
  __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
5827
5826
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
5828
5827
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
5829
- if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 24, __pyx_L1_error)
5828
+ if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 26, __pyx_L1_error)
5830
5829
  __Pyx_GOTREF(__pyx_t_8);
5831
5830
  }
5832
- __pyx_t_9 = __Pyx_PyLong_As_int(__pyx_t_8); if (unlikely((__pyx_t_9 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 24, __pyx_L1_error)
5831
+ __pyx_t_9 = __Pyx_PyLong_As_int(__pyx_t_8); if (unlikely((__pyx_t_9 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 26, __pyx_L1_error)
5833
5832
  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
5834
5833
  __pyx_v_max_groups = __pyx_t_9;
5835
5834
 
5836
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":27
5835
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":29
5837
5836
  *
5838
5837
  * # int32np.nanint32
5839
5838
  * cdef cnp.ndarray[int32_t, ndim=2] result = np.full((n, max_groups), -999, dtype=np.int32) # <<<<<<<<<<<<<<
@@ -5841,26 +5840,26 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5841
5840
  * for i in range(n):
5842
5841
  */
5843
5842
  __pyx_t_5 = NULL;
5844
- __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 27, __pyx_L1_error)
5843
+ __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 29, __pyx_L1_error)
5845
5844
  __Pyx_GOTREF(__pyx_t_7);
5846
- __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_full); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 27, __pyx_L1_error)
5845
+ __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_mstate_global->__pyx_n_u_full); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 29, __pyx_L1_error)
5847
5846
  __Pyx_GOTREF(__pyx_t_4);
5848
5847
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
5849
- __pyx_t_7 = __Pyx_PyLong_From_int(__pyx_v_n); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 27, __pyx_L1_error)
5848
+ __pyx_t_7 = __Pyx_PyLong_From_int(__pyx_v_n); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 29, __pyx_L1_error)
5850
5849
  __Pyx_GOTREF(__pyx_t_7);
5851
- __pyx_t_12 = __Pyx_PyLong_From_int(__pyx_v_max_groups); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 27, __pyx_L1_error)
5850
+ __pyx_t_12 = __Pyx_PyLong_From_int(__pyx_v_max_groups); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 29, __pyx_L1_error)
5852
5851
  __Pyx_GOTREF(__pyx_t_12);
5853
- __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 27, __pyx_L1_error)
5852
+ __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 29, __pyx_L1_error)
5854
5853
  __Pyx_GOTREF(__pyx_t_1);
5855
5854
  __Pyx_GIVEREF(__pyx_t_7);
5856
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_t_7) != (0)) __PYX_ERR(0, 27, __pyx_L1_error);
5855
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_t_7) != (0)) __PYX_ERR(0, 29, __pyx_L1_error);
5857
5856
  __Pyx_GIVEREF(__pyx_t_12);
5858
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_12) != (0)) __PYX_ERR(0, 27, __pyx_L1_error);
5857
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_12) != (0)) __PYX_ERR(0, 29, __pyx_L1_error);
5859
5858
  __pyx_t_7 = 0;
5860
5859
  __pyx_t_12 = 0;
5861
- __Pyx_GetModuleGlobalName(__pyx_t_12, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 27, __pyx_L1_error)
5860
+ __Pyx_GetModuleGlobalName(__pyx_t_12, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 29, __pyx_L1_error)
5862
5861
  __Pyx_GOTREF(__pyx_t_12);
5863
- __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_12, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 27, __pyx_L1_error)
5862
+ __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_12, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 29, __pyx_L1_error)
5864
5863
  __Pyx_GOTREF(__pyx_t_7);
5865
5864
  __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
5866
5865
  __pyx_t_6 = 1;
@@ -5877,31 +5876,31 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5877
5876
  #endif
5878
5877
  {
5879
5878
  PyObject *__pyx_callargs[3 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_5, __pyx_t_1, __pyx_mstate_global->__pyx_int_neg_999};
5880
- __pyx_t_12 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 27, __pyx_L1_error)
5879
+ __pyx_t_12 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 29, __pyx_L1_error)
5881
5880
  __Pyx_GOTREF(__pyx_t_12);
5882
- if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_dtype, __pyx_t_7, __pyx_t_12, __pyx_callargs+3, 0) < 0) __PYX_ERR(0, 27, __pyx_L1_error)
5881
+ if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_dtype, __pyx_t_7, __pyx_t_12, __pyx_callargs+3, 0) < 0) __PYX_ERR(0, 29, __pyx_L1_error)
5883
5882
  __pyx_t_8 = __Pyx_Object_Vectorcall_CallFromBuilder(__pyx_t_4, __pyx_callargs+__pyx_t_6, (3-__pyx_t_6) | (__pyx_t_6*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_12);
5884
5883
  __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
5885
5884
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5886
5885
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
5887
5886
  __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
5888
5887
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
5889
- if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 27, __pyx_L1_error)
5888
+ if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 29, __pyx_L1_error)
5890
5889
  __Pyx_GOTREF(__pyx_t_8);
5891
5890
  }
5892
- if (!(likely(((__pyx_t_8) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_8, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 27, __pyx_L1_error)
5891
+ if (!(likely(((__pyx_t_8) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_8, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 29, __pyx_L1_error)
5893
5892
  {
5894
5893
  __Pyx_BufFmt_StackElem __pyx_stack[1];
5895
5894
  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_result.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_8), &__Pyx_TypeInfo_nn_int32_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) {
5896
5895
  __pyx_v_result = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_result.rcbuffer->pybuffer.buf = NULL;
5897
- __PYX_ERR(0, 27, __pyx_L1_error)
5896
+ __PYX_ERR(0, 29, __pyx_L1_error)
5898
5897
  } else {__pyx_pybuffernd_result.diminfo[0].strides = __pyx_pybuffernd_result.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_result.diminfo[0].shape = __pyx_pybuffernd_result.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_result.diminfo[1].strides = __pyx_pybuffernd_result.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_result.diminfo[1].shape = __pyx_pybuffernd_result.rcbuffer->pybuffer.shape[1];
5899
5898
  }
5900
5899
  }
5901
5900
  __pyx_v_result = ((PyArrayObject *)__pyx_t_8);
5902
5901
  __pyx_t_8 = 0;
5903
5902
 
5904
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":29
5903
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":31
5905
5904
  * cdef cnp.ndarray[int32_t, ndim=2] result = np.full((n, max_groups), -999, dtype=np.int32)
5906
5905
  *
5907
5906
  * for i in range(n): # <<<<<<<<<<<<<<
@@ -5913,46 +5912,46 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5913
5912
  for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
5914
5913
  __pyx_v_i = __pyx_t_11;
5915
5914
 
5916
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":30
5915
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":32
5917
5916
  *
5918
5917
  * for i in range(n):
5919
5918
  * g = groups[i] # <<<<<<<<<<<<<<
5920
5919
  * result[i, :len(g)] = g
5921
5920
  *
5922
5921
  */
5923
- __pyx_t_8 = __Pyx_GetItemInt_List(__pyx_v_groups, __pyx_v_i, int, 1, __Pyx_PyLong_From_int, 1, 1, 1, 1); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 30, __pyx_L1_error)
5922
+ __pyx_t_8 = __Pyx_GetItemInt_List(__pyx_v_groups, __pyx_v_i, int, 1, __Pyx_PyLong_From_int, 1, 1, 1, 1); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 32, __pyx_L1_error)
5924
5923
  __Pyx_GOTREF(__pyx_t_8);
5925
5924
  __Pyx_XDECREF_SET(__pyx_v_g, __pyx_t_8);
5926
5925
  __pyx_t_8 = 0;
5927
5926
 
5928
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":31
5927
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":33
5929
5928
  * for i in range(n):
5930
5929
  * g = groups[i]
5931
5930
  * result[i, :len(g)] = g # <<<<<<<<<<<<<<
5932
5931
  *
5933
5932
  * return result
5934
5933
  */
5935
- __pyx_t_8 = __Pyx_PyLong_From_int(__pyx_v_i); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 31, __pyx_L1_error)
5934
+ __pyx_t_8 = __Pyx_PyLong_From_int(__pyx_v_i); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 33, __pyx_L1_error)
5936
5935
  __Pyx_GOTREF(__pyx_t_8);
5937
- __pyx_t_16 = PyObject_Length(__pyx_v_g); if (unlikely(__pyx_t_16 == ((Py_ssize_t)-1))) __PYX_ERR(0, 31, __pyx_L1_error)
5938
- __pyx_t_4 = PyLong_FromSsize_t(__pyx_t_16); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 31, __pyx_L1_error)
5936
+ __pyx_t_16 = PyObject_Length(__pyx_v_g); if (unlikely(__pyx_t_16 == ((Py_ssize_t)-1))) __PYX_ERR(0, 33, __pyx_L1_error)
5937
+ __pyx_t_4 = PyLong_FromSsize_t(__pyx_t_16); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 33, __pyx_L1_error)
5939
5938
  __Pyx_GOTREF(__pyx_t_4);
5940
- __pyx_t_12 = PySlice_New(Py_None, __pyx_t_4, Py_None); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 31, __pyx_L1_error)
5939
+ __pyx_t_12 = PySlice_New(Py_None, __pyx_t_4, Py_None); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 33, __pyx_L1_error)
5941
5940
  __Pyx_GOTREF(__pyx_t_12);
5942
5941
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
5943
- __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 31, __pyx_L1_error)
5942
+ __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 33, __pyx_L1_error)
5944
5943
  __Pyx_GOTREF(__pyx_t_4);
5945
5944
  __Pyx_GIVEREF(__pyx_t_8);
5946
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_8) != (0)) __PYX_ERR(0, 31, __pyx_L1_error);
5945
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_8) != (0)) __PYX_ERR(0, 33, __pyx_L1_error);
5947
5946
  __Pyx_GIVEREF(__pyx_t_12);
5948
- if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_12) != (0)) __PYX_ERR(0, 31, __pyx_L1_error);
5947
+ if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_12) != (0)) __PYX_ERR(0, 33, __pyx_L1_error);
5949
5948
  __pyx_t_8 = 0;
5950
5949
  __pyx_t_12 = 0;
5951
- if (unlikely((PyObject_SetItem(((PyObject *)__pyx_v_result), __pyx_t_4, __pyx_v_g) < 0))) __PYX_ERR(0, 31, __pyx_L1_error)
5950
+ if (unlikely((PyObject_SetItem(((PyObject *)__pyx_v_result), __pyx_t_4, __pyx_v_g) < 0))) __PYX_ERR(0, 33, __pyx_L1_error)
5952
5951
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
5953
5952
  }
5954
5953
 
5955
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":33
5954
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":35
5956
5955
  * result[i, :len(g)] = g
5957
5956
  *
5958
5957
  * return result # <<<<<<<<<<<<<<
@@ -5962,7 +5961,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_6seqdss_seqd
5962
5961
  __pyx_r = ((PyObject *)__pyx_v_result);
5963
5962
  goto __pyx_L0;
5964
5963
 
5965
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":6
5964
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":8
5966
5965
  * from libc.stdint cimport int32_t
5967
5966
  *
5968
5967
  * def seqdss(seqdata): # <<<<<<<<<<<<<<
@@ -6230,15 +6229,15 @@ static int __Pyx_modinit_type_init_code(__pyx_mstatetype *__pyx_mstate) {
6230
6229
  __Pyx_RefNannySetupContext("__Pyx_modinit_type_init_code", 0);
6231
6230
  /*--- Type init code ---*/
6232
6231
  #if CYTHON_USE_TYPE_SPECS
6233
- __pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr = (PyTypeObject *) __Pyx_PyType_FromModuleAndSpec(__pyx_m, &__pyx_type_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr_spec, NULL); if (unlikely(!__pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr)) __PYX_ERR(0, 24, __pyx_L1_error)
6234
- if (__Pyx_fix_up_extension_type_from_spec(&__pyx_type_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr_spec, __pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr) < 0) __PYX_ERR(0, 24, __pyx_L1_error)
6232
+ __pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr = (PyTypeObject *) __Pyx_PyType_FromModuleAndSpec(__pyx_m, &__pyx_type_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr_spec, NULL); if (unlikely(!__pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr)) __PYX_ERR(0, 26, __pyx_L1_error)
6233
+ if (__Pyx_fix_up_extension_type_from_spec(&__pyx_type_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr_spec, __pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr) < 0) __PYX_ERR(0, 26, __pyx_L1_error)
6235
6234
  #else
6236
6235
  __pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr = &__pyx_type_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr;
6237
6236
  #endif
6238
6237
  #if !CYTHON_COMPILING_IN_LIMITED_API
6239
6238
  #endif
6240
6239
  #if !CYTHON_USE_TYPE_SPECS
6241
- if (__Pyx_PyType_Ready(__pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr) < 0) __PYX_ERR(0, 24, __pyx_L1_error)
6240
+ if (__Pyx_PyType_Ready(__pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr) < 0) __PYX_ERR(0, 26, __pyx_L1_error)
6242
6241
  #endif
6243
6242
  #if !CYTHON_COMPILING_IN_LIMITED_API
6244
6243
  if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr->tp_dictoffset && __pyx_mstate->__pyx_ptype_8sequenzo_22dissimilarity_measures_5utils_6seqdss___pyx_scope_struct__genexpr->tp_getattro == PyObject_GenericGetAttr)) {
@@ -6720,50 +6719,51 @@ __Pyx_RefNannySetupContext("PyInit_seqdss", 0);
6720
6719
  (void)__Pyx_modinit_function_import_code(__pyx_mstate);
6721
6720
  /*--- Execution code ---*/
6722
6721
 
6723
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":1
6722
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":2
6723
+ * # cython: np_import_array=True
6724
6724
  * import numpy as np # <<<<<<<<<<<<<<
6725
6725
  * cimport numpy as cnp
6726
- * from sequenzo.define_sequence_data import SequenceData
6726
+ *
6727
6727
  */
6728
- __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1, __pyx_L1_error)
6728
+ __pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 2, __pyx_L1_error)
6729
6729
  __Pyx_GOTREF(__pyx_t_2);
6730
- if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
6730
+ if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0, 2, __pyx_L1_error)
6731
6731
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6732
6732
 
6733
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":3
6734
- * import numpy as np
6733
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":5
6735
6734
  * cimport numpy as cnp
6735
+ *
6736
6736
  * from sequenzo.define_sequence_data import SequenceData # <<<<<<<<<<<<<<
6737
6737
  * from libc.stdint cimport int32_t
6738
6738
  *
6739
6739
  */
6740
- __pyx_t_2 = __Pyx_PyList_Pack(1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 3, __pyx_L1_error)
6740
+ __pyx_t_2 = __Pyx_PyList_Pack(1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 5, __pyx_L1_error)
6741
6741
  __Pyx_GOTREF(__pyx_t_2);
6742
- __pyx_t_3 = __Pyx_Import(__pyx_mstate_global->__pyx_n_u_sequenzo_define_sequence_data, __pyx_t_2, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 3, __pyx_L1_error)
6742
+ __pyx_t_3 = __Pyx_Import(__pyx_mstate_global->__pyx_n_u_sequenzo_define_sequence_data, __pyx_t_2, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 5, __pyx_L1_error)
6743
6743
  __Pyx_GOTREF(__pyx_t_3);
6744
6744
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6745
- __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 3, __pyx_L1_error)
6745
+ __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 5, __pyx_L1_error)
6746
6746
  __Pyx_GOTREF(__pyx_t_2);
6747
- if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_SequenceData, __pyx_t_2) < 0) __PYX_ERR(0, 3, __pyx_L1_error)
6747
+ if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_SequenceData, __pyx_t_2) < 0) __PYX_ERR(0, 5, __pyx_L1_error)
6748
6748
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6749
6749
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6750
6750
 
6751
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":6
6751
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":8
6752
6752
  * from libc.stdint cimport int32_t
6753
6753
  *
6754
6754
  * def seqdss(seqdata): # <<<<<<<<<<<<<<
6755
6755
  * if not isinstance(seqdata, SequenceData):
6756
6756
  * raise ValueError("[!] data is NOT a sequence object, see SequenceData to create one.")
6757
6757
  */
6758
- __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_6seqdss_1seqdss, 0, __pyx_mstate_global->__pyx_n_u_seqdss, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[1])); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 6, __pyx_L1_error)
6758
+ __pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_6seqdss_1seqdss, 0, __pyx_mstate_global->__pyx_n_u_seqdss, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[1])); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 8, __pyx_L1_error)
6759
6759
  __Pyx_GOTREF(__pyx_t_3);
6760
- if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqdss, __pyx_t_3) < 0) __PYX_ERR(0, 6, __pyx_L1_error)
6760
+ if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqdss, __pyx_t_3) < 0) __PYX_ERR(0, 8, __pyx_L1_error)
6761
6761
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6762
6762
 
6763
6763
  /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":1
6764
- * import numpy as np # <<<<<<<<<<<<<<
6764
+ * # cython: np_import_array=True # <<<<<<<<<<<<<<
6765
+ * import numpy as np
6765
6766
  * cimport numpy as cnp
6766
- * from sequenzo.define_sequence_data import SequenceData
6767
6767
  */
6768
6768
  __pyx_t_3 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1, __pyx_L1_error)
6769
6769
  __Pyx_GOTREF(__pyx_t_3);
@@ -6904,10 +6904,10 @@ static int __Pyx_InitStrings(__Pyx_StringTabEntry const *t, PyObject **target, c
6904
6904
 
6905
6905
  static int __Pyx_InitCachedBuiltins(__pyx_mstatetype *__pyx_mstate) {
6906
6906
  CYTHON_UNUSED_VAR(__pyx_mstate);
6907
- __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(0, 8, __pyx_L1_error)
6908
- __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_range); if (!__pyx_builtin_range) __PYX_ERR(0, 17, __pyx_L1_error)
6909
- __pyx_builtin_max = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_max); if (!__pyx_builtin_max) __PYX_ERR(0, 24, __pyx_L1_error)
6910
- __pyx_builtin_zip = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_zip); if (!__pyx_builtin_zip) __PYX_ERR(0, 23, __pyx_L1_error)
6907
+ __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(0, 10, __pyx_L1_error)
6908
+ __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_range); if (!__pyx_builtin_range) __PYX_ERR(0, 19, __pyx_L1_error)
6909
+ __pyx_builtin_max = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_max); if (!__pyx_builtin_max) __PYX_ERR(0, 26, __pyx_L1_error)
6910
+ __pyx_builtin_zip = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_zip); if (!__pyx_builtin_zip) __PYX_ERR(0, 25, __pyx_L1_error)
6911
6911
  __pyx_builtin_ImportError = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_ImportError); if (!__pyx_builtin_ImportError) __PYX_ERR(1, 1010, __pyx_L1_error)
6912
6912
  return 0;
6913
6913
  __pyx_L1_error:;
@@ -6920,34 +6920,34 @@ static int __Pyx_InitCachedConstants(__pyx_mstatetype *__pyx_mstate) {
6920
6920
  CYTHON_UNUSED_VAR(__pyx_mstate);
6921
6921
  __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);
6922
6922
 
6923
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":18
6923
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":20
6924
6924
  *
6925
6925
  * for j in range(1, m):
6926
6926
  * mask = (ffill[:, j] < 0) # <<<<<<<<<<<<<<
6927
6927
  * ffill[mask, j] = ffill[mask, j - 1]
6928
6928
  *
6929
6929
  */
6930
- __pyx_mstate_global->__pyx_slice[0] = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_mstate_global->__pyx_slice[0])) __PYX_ERR(0, 18, __pyx_L1_error)
6930
+ __pyx_mstate_global->__pyx_slice[0] = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_mstate_global->__pyx_slice[0])) __PYX_ERR(0, 20, __pyx_L1_error)
6931
6931
  __Pyx_GOTREF(__pyx_mstate_global->__pyx_slice[0]);
6932
6932
  __Pyx_GIVEREF(__pyx_mstate_global->__pyx_slice[0]);
6933
6933
 
6934
- /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":21
6934
+ /* "sequenzo/dissimilarity_measures/utils/seqdss.pyx":23
6935
6935
  * ffill[mask, j] = ffill[mask, j - 1]
6936
6936
  *
6937
6937
  * boundaries = np.concatenate([boundaries, ffill[:, 1:] != ffill[:, :-1]], axis=1) # <<<<<<<<<<<<<<
6938
6938
  *
6939
6939
  * cdef list groups = [row[boundary & (row >= 0)] for row, boundary in zip(ffill, boundaries)]
6940
6940
  */
6941
- __pyx_mstate_global->__pyx_slice[1] = PySlice_New(__pyx_mstate_global->__pyx_int_1, Py_None, Py_None); if (unlikely(!__pyx_mstate_global->__pyx_slice[1])) __PYX_ERR(0, 21, __pyx_L1_error)
6941
+ __pyx_mstate_global->__pyx_slice[1] = PySlice_New(__pyx_mstate_global->__pyx_int_1, Py_None, Py_None); if (unlikely(!__pyx_mstate_global->__pyx_slice[1])) __PYX_ERR(0, 23, __pyx_L1_error)
6942
6942
  __Pyx_GOTREF(__pyx_mstate_global->__pyx_slice[1]);
6943
6943
  __Pyx_GIVEREF(__pyx_mstate_global->__pyx_slice[1]);
6944
- __pyx_mstate_global->__pyx_tuple[0] = PyTuple_Pack(2, __pyx_mstate_global->__pyx_slice[0], __pyx_mstate_global->__pyx_slice[1]); if (unlikely(!__pyx_mstate_global->__pyx_tuple[0])) __PYX_ERR(0, 21, __pyx_L1_error)
6944
+ __pyx_mstate_global->__pyx_tuple[0] = PyTuple_Pack(2, __pyx_mstate_global->__pyx_slice[0], __pyx_mstate_global->__pyx_slice[1]); if (unlikely(!__pyx_mstate_global->__pyx_tuple[0])) __PYX_ERR(0, 23, __pyx_L1_error)
6945
6945
  __Pyx_GOTREF(__pyx_mstate_global->__pyx_tuple[0]);
6946
6946
  __Pyx_GIVEREF(__pyx_mstate_global->__pyx_tuple[0]);
6947
- __pyx_mstate_global->__pyx_slice[2] = PySlice_New(Py_None, __pyx_mstate_global->__pyx_int_neg_1, Py_None); if (unlikely(!__pyx_mstate_global->__pyx_slice[2])) __PYX_ERR(0, 21, __pyx_L1_error)
6947
+ __pyx_mstate_global->__pyx_slice[2] = PySlice_New(Py_None, __pyx_mstate_global->__pyx_int_neg_1, Py_None); if (unlikely(!__pyx_mstate_global->__pyx_slice[2])) __PYX_ERR(0, 23, __pyx_L1_error)
6948
6948
  __Pyx_GOTREF(__pyx_mstate_global->__pyx_slice[2]);
6949
6949
  __Pyx_GIVEREF(__pyx_mstate_global->__pyx_slice[2]);
6950
- __pyx_mstate_global->__pyx_tuple[1] = PyTuple_Pack(2, __pyx_mstate_global->__pyx_slice[0], __pyx_mstate_global->__pyx_slice[2]); if (unlikely(!__pyx_mstate_global->__pyx_tuple[1])) __PYX_ERR(0, 21, __pyx_L1_error)
6950
+ __pyx_mstate_global->__pyx_tuple[1] = PyTuple_Pack(2, __pyx_mstate_global->__pyx_slice[0], __pyx_mstate_global->__pyx_slice[2]); if (unlikely(!__pyx_mstate_global->__pyx_tuple[1])) __PYX_ERR(0, 23, __pyx_L1_error)
6951
6951
  __Pyx_GOTREF(__pyx_mstate_global->__pyx_tuple[1]);
6952
6952
  __Pyx_GIVEREF(__pyx_mstate_global->__pyx_tuple[1]);
6953
6953
  __Pyx_RefNannyFinishContext();
@@ -6997,12 +6997,12 @@ static int __Pyx_CreateCodeObjects(__pyx_mstatetype *__pyx_mstate) {
6997
6997
  PyObject* tuple_dedup_map = PyDict_New();
6998
6998
  if (unlikely(!tuple_dedup_map)) return -1;
6999
6999
  {
7000
- const __Pyx_PyCode_New_function_description descr = {0, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS|CO_GENERATOR), 24, 2};
7000
+ const __Pyx_PyCode_New_function_description descr = {0, 0, 0, 1, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS|CO_GENERATOR), 26, 2};
7001
7001
  PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_g};
7002
7002
  __pyx_mstate_global->__pyx_codeobj_tab[0] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_sequenzo_dissimilarity_measures_2, __pyx_mstate->__pyx_n_u_genexpr, __pyx_k__3, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[0])) goto bad;
7003
7003
  }
7004
7004
  {
7005
- const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 17, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 6, 275};
7005
+ const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 17, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 8, 275};
7006
7006
  PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_seqdata, __pyx_mstate->__pyx_n_u_seqdatanum, __pyx_mstate->__pyx_n_u_n, __pyx_mstate->__pyx_n_u_m, __pyx_mstate->__pyx_n_u_i, __pyx_mstate->__pyx_n_u_j, __pyx_mstate->__pyx_n_u_ffill, __pyx_mstate->__pyx_n_u_boundaries, __pyx_mstate->__pyx_n_u_mask, __pyx_mstate->__pyx_n_u_groups, __pyx_mstate->__pyx_n_u_max_groups, __pyx_mstate->__pyx_n_u_result, __pyx_mstate->__pyx_n_u_g, __pyx_mstate->__pyx_n_u_row, __pyx_mstate->__pyx_n_u_boundary, __pyx_mstate->__pyx_n_u_genexpr, __pyx_mstate->__pyx_n_u_genexpr};
7007
7007
  __pyx_mstate_global->__pyx_codeobj_tab[1] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_sequenzo_dissimilarity_measures_2, __pyx_mstate->__pyx_n_u_seqdss, __pyx_k_t_Qiq_j_37_8SXXY_6_F_1_a_0_r_D, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[1])) goto bad;
7008
7008
  }