sequenzo 0.1.20__cp310-cp310-win_amd64.whl → 0.1.22__cp310-cp310-win_amd64.whl
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- sequenzo/big_data/clara/utils/get_weighted_diss.c +193 -193
- sequenzo/big_data/clara/utils/get_weighted_diss.cp310-win_amd64.pyd +0 -0
- sequenzo/clustering/clustering_c_code.cp310-win_amd64.pyd +0 -0
- sequenzo/clustering/hierarchical_clustering.py +1 -1
- sequenzo/define_sequence_data.py +4 -4
- sequenzo/dissimilarity_measures/c_code.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +170 -171
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.c +232 -232
- sequenzo/dissimilarity_measures/utils/seqconc.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.c +325 -325
- sequenzo/dissimilarity_measures/utils/seqdss.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.c +325 -325
- sequenzo/dissimilarity_measures/utils/seqdur.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.c +225 -224
- sequenzo/dissimilarity_measures/utils/seqlength.cp310-win_amd64.pyd +0 -0
- sequenzo/multidomain/association_between_domains.py +1 -1
- sequenzo/multidomain/combt.py +4 -4
- sequenzo/multidomain/linked_polyad.py +3 -3
- sequenzo/prefix_tree/__init__.py +1 -1
- sequenzo/prefix_tree/individual_level_indicators.py +2 -2
- sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +2 -2
- sequenzo/sequence_characteristics/plot_characteristics.py +2 -2
- sequenzo/sequence_characteristics/simple_characteristics.py +2 -2
- sequenzo/suffix_tree/__init__.py +1 -1
- sequenzo/suffix_tree/individual_level_indicators.py +3 -3
- sequenzo/visualization/plot_single_medoid.py +2 -2
- sequenzo/visualization/plot_transition_matrix.py +3 -2
- sequenzo/visualization/utils/utils.py +2 -2
- sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +1 -1
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/METADATA +17 -43
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/RECORD +35 -41
- sequenzo/big_data/clara/utils/get_weighted_diss.pyx +0 -16
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.pyx +0 -95
- sequenzo/dissimilarity_measures/utils/seqconc.pyx +0 -26
- sequenzo/dissimilarity_measures/utils/seqdss.pyx +0 -33
- sequenzo/dissimilarity_measures/utils/seqdur.pyx +0 -34
- sequenzo/dissimilarity_measures/utils/seqlength.pyx +0 -19
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/WHEEL +0 -0
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/licenses/LICENSE +0 -0
- {sequenzo-0.1.20.dist-info → sequenzo-0.1.22.dist-info}/top_level.txt +0 -0
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typedef npy_double __pyx_t_5numpy_double_t;
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":817
|
|
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|
* ctypedef npy_double float_t
|
|
1747
1746
|
* ctypedef npy_double double_t
|
|
1748
1747
|
* ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
|
|
@@ -3001,7 +3000,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
|
|
|
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|
#endif
|
|
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3001
|
/* #### Code section: module_code ### */
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":286
|
|
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|
* cdef int type_num
|
|
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3005
|
*
|
|
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3006
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3012,7 +3011,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
|
|
|
3012
3011
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_Descr *__pyx_v_self) {
|
|
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3012
|
npy_intp __pyx_r;
|
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|
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|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":288
|
|
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3015
|
* @property
|
|
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3016
|
* cdef inline npy_intp itemsize(self) noexcept nogil:
|
|
3018
3017
|
* return PyDataType_ELSIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3022,7 +3021,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3022
3021
|
__pyx_r = PyDataType_ELSIZE(__pyx_v_self);
|
|
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3022
|
goto __pyx_L0;
|
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3023
|
|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":286
|
|
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|
* cdef int type_num
|
|
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3026
|
*
|
|
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3027
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3035,7 +3034,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3035
3034
|
return __pyx_r;
|
|
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3035
|
}
|
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|
|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":290
|
|
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3038
|
* return PyDataType_ELSIZE(self)
|
|
3040
3039
|
*
|
|
3041
3040
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3046,7 +3045,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3046
3045
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray_Descr *__pyx_v_self) {
|
|
3047
3046
|
npy_intp __pyx_r;
|
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3047
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":292
|
|
3050
3049
|
* @property
|
|
3051
3050
|
* cdef inline npy_intp alignment(self) noexcept nogil:
|
|
3052
3051
|
* return PyDataType_ALIGNMENT(self) # <<<<<<<<<<<<<<
|
|
@@ -3056,7 +3055,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
|
|
|
3056
3055
|
__pyx_r = PyDataType_ALIGNMENT(__pyx_v_self);
|
|
3057
3056
|
goto __pyx_L0;
|
|
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3057
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
3058
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":290
|
|
3060
3059
|
* return PyDataType_ELSIZE(self)
|
|
3061
3060
|
*
|
|
3062
3061
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3069,7 +3068,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
|
|
|
3069
3068
|
return __pyx_r;
|
|
3070
3069
|
}
|
|
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3070
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":296
|
|
3073
3072
|
* # Use fields/names with care as they may be NULL. You must check
|
|
3074
3073
|
* # for this using PyDataType_HASFIELDS.
|
|
3075
3074
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3083,7 +3082,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3083
3082
|
PyObject *__pyx_t_1;
|
|
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3083
|
__Pyx_RefNannySetupContext("fields", 0);
|
|
3085
3084
|
|
|
3086
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3085
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":298
|
|
3087
3086
|
* @property
|
|
3088
3087
|
* cdef inline object fields(self):
|
|
3089
3088
|
* return <object>PyDataType_FIELDS(self) # <<<<<<<<<<<<<<
|
|
@@ -3096,7 +3095,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3096
3095
|
__pyx_r = ((PyObject *)__pyx_t_1);
|
|
3097
3096
|
goto __pyx_L0;
|
|
3098
3097
|
|
|
3099
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3098
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":296
|
|
3100
3099
|
* # Use fields/names with care as they may be NULL. You must check
|
|
3101
3100
|
* # for this using PyDataType_HASFIELDS.
|
|
3102
3101
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3111,7 +3110,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3111
3110
|
return __pyx_r;
|
|
3112
3111
|
}
|
|
3113
3112
|
|
|
3114
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3113
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":300
|
|
3115
3114
|
* return <object>PyDataType_FIELDS(self)
|
|
3116
3115
|
*
|
|
3117
3116
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3125,7 +3124,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3125
3124
|
PyObject *__pyx_t_1;
|
|
3126
3125
|
__Pyx_RefNannySetupContext("names", 0);
|
|
3127
3126
|
|
|
3128
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3127
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":302
|
|
3129
3128
|
* @property
|
|
3130
3129
|
* cdef inline tuple names(self):
|
|
3131
3130
|
* return <tuple>PyDataType_NAMES(self) # <<<<<<<<<<<<<<
|
|
@@ -3138,7 +3137,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3138
3137
|
__pyx_r = ((PyObject*)__pyx_t_1);
|
|
3139
3138
|
goto __pyx_L0;
|
|
3140
3139
|
|
|
3141
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3140
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":300
|
|
3142
3141
|
* return <object>PyDataType_FIELDS(self)
|
|
3143
3142
|
*
|
|
3144
3143
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3153,7 +3152,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3153
3152
|
return __pyx_r;
|
|
3154
3153
|
}
|
|
3155
3154
|
|
|
3156
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3155
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":307
|
|
3157
3156
|
* # valid (the pointer can be NULL). Most users should access
|
|
3158
3157
|
* # this field via the inline helper method PyDataType_SHAPE.
|
|
3159
3158
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3164,7 +3163,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3164
3163
|
static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarray(PyArray_Descr *__pyx_v_self) {
|
|
3165
3164
|
PyArray_ArrayDescr *__pyx_r;
|
|
3166
3165
|
|
|
3167
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3166
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":309
|
|
3168
3167
|
* @property
|
|
3169
3168
|
* cdef inline PyArray_ArrayDescr* subarray(self) noexcept nogil:
|
|
3170
3169
|
* return PyDataType_SUBARRAY(self) # <<<<<<<<<<<<<<
|
|
@@ -3174,7 +3173,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3174
3173
|
__pyx_r = PyDataType_SUBARRAY(__pyx_v_self);
|
|
3175
3174
|
goto __pyx_L0;
|
|
3176
3175
|
|
|
3177
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3176
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":307
|
|
3178
3177
|
* # valid (the pointer can be NULL). Most users should access
|
|
3179
3178
|
* # this field via the inline helper method PyDataType_SHAPE.
|
|
3180
3179
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3187,7 +3186,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3187
3186
|
return __pyx_r;
|
|
3188
3187
|
}
|
|
3189
3188
|
|
|
3190
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3189
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":311
|
|
3191
3190
|
* return PyDataType_SUBARRAY(self)
|
|
3192
3191
|
*
|
|
3193
3192
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3198,7 +3197,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3198
3197
|
static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr *__pyx_v_self) {
|
|
3199
3198
|
npy_uint64 __pyx_r;
|
|
3200
3199
|
|
|
3201
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3200
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":314
|
|
3202
3201
|
* cdef inline npy_uint64 flags(self) noexcept nogil:
|
|
3203
3202
|
* """The data types flags."""
|
|
3204
3203
|
* return PyDataType_FLAGS(self) # <<<<<<<<<<<<<<
|
|
@@ -3208,7 +3207,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3208
3207
|
__pyx_r = PyDataType_FLAGS(__pyx_v_self);
|
|
3209
3208
|
goto __pyx_L0;
|
|
3210
3209
|
|
|
3211
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3210
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":311
|
|
3212
3211
|
* return PyDataType_SUBARRAY(self)
|
|
3213
3212
|
*
|
|
3214
3213
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3221,7 +3220,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3221
3220
|
return __pyx_r;
|
|
3222
3221
|
}
|
|
3223
3222
|
|
|
3224
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3223
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":323
|
|
3225
3224
|
* ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
|
|
3226
3225
|
*
|
|
3227
3226
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3232,7 +3231,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3232
3231
|
static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3233
3232
|
int __pyx_r;
|
|
3234
3233
|
|
|
3235
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3234
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":326
|
|
3236
3235
|
* cdef inline int numiter(self) noexcept nogil:
|
|
3237
3236
|
* """The number of arrays that need to be broadcast to the same shape."""
|
|
3238
3237
|
* return PyArray_MultiIter_NUMITER(self) # <<<<<<<<<<<<<<
|
|
@@ -3242,7 +3241,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3242
3241
|
__pyx_r = PyArray_MultiIter_NUMITER(__pyx_v_self);
|
|
3243
3242
|
goto __pyx_L0;
|
|
3244
3243
|
|
|
3245
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3244
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":323
|
|
3246
3245
|
* ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
|
|
3247
3246
|
*
|
|
3248
3247
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3255,7 +3254,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3255
3254
|
return __pyx_r;
|
|
3256
3255
|
}
|
|
3257
3256
|
|
|
3258
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3257
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":328
|
|
3259
3258
|
* return PyArray_MultiIter_NUMITER(self)
|
|
3260
3259
|
*
|
|
3261
3260
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3266,7 +3265,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3266
3265
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3267
3266
|
npy_intp __pyx_r;
|
|
3268
3267
|
|
|
3269
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3268
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":331
|
|
3270
3269
|
* cdef inline npy_intp size(self) noexcept nogil:
|
|
3271
3270
|
* """The total broadcasted size."""
|
|
3272
3271
|
* return PyArray_MultiIter_SIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3276,7 +3275,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3276
3275
|
__pyx_r = PyArray_MultiIter_SIZE(__pyx_v_self);
|
|
3277
3276
|
goto __pyx_L0;
|
|
3278
3277
|
|
|
3279
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3278
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":328
|
|
3280
3279
|
* return PyArray_MultiIter_NUMITER(self)
|
|
3281
3280
|
*
|
|
3282
3281
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3289,7 +3288,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3289
3288
|
return __pyx_r;
|
|
3290
3289
|
}
|
|
3291
3290
|
|
|
3292
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3291
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":333
|
|
3293
3292
|
* return PyArray_MultiIter_SIZE(self)
|
|
3294
3293
|
*
|
|
3295
3294
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3300,7 +3299,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3300
3299
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3301
3300
|
npy_intp __pyx_r;
|
|
3302
3301
|
|
|
3303
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3302
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":336
|
|
3304
3303
|
* cdef inline npy_intp index(self) noexcept nogil:
|
|
3305
3304
|
* """The current (1-d) index into the broadcasted result."""
|
|
3306
3305
|
* return PyArray_MultiIter_INDEX(self) # <<<<<<<<<<<<<<
|
|
@@ -3310,7 +3309,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3310
3309
|
__pyx_r = PyArray_MultiIter_INDEX(__pyx_v_self);
|
|
3311
3310
|
goto __pyx_L0;
|
|
3312
3311
|
|
|
3313
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3312
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":333
|
|
3314
3313
|
* return PyArray_MultiIter_SIZE(self)
|
|
3315
3314
|
*
|
|
3316
3315
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3323,7 +3322,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3323
3322
|
return __pyx_r;
|
|
3324
3323
|
}
|
|
3325
3324
|
|
|
3326
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3325
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":338
|
|
3327
3326
|
* return PyArray_MultiIter_INDEX(self)
|
|
3328
3327
|
*
|
|
3329
3328
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3334,7 +3333,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3334
3333
|
static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3335
3334
|
int __pyx_r;
|
|
3336
3335
|
|
|
3337
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3336
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":341
|
|
3338
3337
|
* cdef inline int nd(self) noexcept nogil:
|
|
3339
3338
|
* """The number of dimensions in the broadcasted result."""
|
|
3340
3339
|
* return PyArray_MultiIter_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -3344,7 +3343,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3344
3343
|
__pyx_r = PyArray_MultiIter_NDIM(__pyx_v_self);
|
|
3345
3344
|
goto __pyx_L0;
|
|
3346
3345
|
|
|
3347
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3346
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":338
|
|
3348
3347
|
* return PyArray_MultiIter_INDEX(self)
|
|
3349
3348
|
*
|
|
3350
3349
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3357,7 +3356,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3357
3356
|
return __pyx_r;
|
|
3358
3357
|
}
|
|
3359
3358
|
|
|
3360
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3359
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":343
|
|
3361
3360
|
* return PyArray_MultiIter_NDIM(self)
|
|
3362
3361
|
*
|
|
3363
3362
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3368,7 +3367,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3368
3367
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3369
3368
|
npy_intp *__pyx_r;
|
|
3370
3369
|
|
|
3371
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3370
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":346
|
|
3372
3371
|
* cdef inline npy_intp* dimensions(self) noexcept nogil:
|
|
3373
3372
|
* """The shape of the broadcasted result."""
|
|
3374
3373
|
* return PyArray_MultiIter_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -3378,7 +3377,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3378
3377
|
__pyx_r = PyArray_MultiIter_DIMS(__pyx_v_self);
|
|
3379
3378
|
goto __pyx_L0;
|
|
3380
3379
|
|
|
3381
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3380
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":343
|
|
3382
3381
|
* return PyArray_MultiIter_NDIM(self)
|
|
3383
3382
|
*
|
|
3384
3383
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3391,7 +3390,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3391
3390
|
return __pyx_r;
|
|
3392
3391
|
}
|
|
3393
3392
|
|
|
3394
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3393
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":348
|
|
3395
3394
|
* return PyArray_MultiIter_DIMS(self)
|
|
3396
3395
|
*
|
|
3397
3396
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3402,7 +3401,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3402
3401
|
static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3403
3402
|
void **__pyx_r;
|
|
3404
3403
|
|
|
3405
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3404
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":352
|
|
3406
3405
|
* """An array of iterator objects that holds the iterators for the arrays to be broadcast together.
|
|
3407
3406
|
* On return, the iterators are adjusted for broadcasting."""
|
|
3408
3407
|
* return PyArray_MultiIter_ITERS(self) # <<<<<<<<<<<<<<
|
|
@@ -3412,7 +3411,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3412
3411
|
__pyx_r = PyArray_MultiIter_ITERS(__pyx_v_self);
|
|
3413
3412
|
goto __pyx_L0;
|
|
3414
3413
|
|
|
3415
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3414
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":348
|
|
3416
3415
|
* return PyArray_MultiIter_DIMS(self)
|
|
3417
3416
|
*
|
|
3418
3417
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3425,7 +3424,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3425
3424
|
return __pyx_r;
|
|
3426
3425
|
}
|
|
3427
3426
|
|
|
3428
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3427
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":366
|
|
3429
3428
|
* # Instead, we use properties that map to the corresponding C-API functions.
|
|
3430
3429
|
*
|
|
3431
3430
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3436,7 +3435,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3436
3435
|
static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject *__pyx_v_self) {
|
|
3437
3436
|
PyObject *__pyx_r;
|
|
3438
3437
|
|
|
3439
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3438
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":370
|
|
3440
3439
|
* """Returns a borrowed reference to the object owning the data/memory.
|
|
3441
3440
|
* """
|
|
3442
3441
|
* return PyArray_BASE(self) # <<<<<<<<<<<<<<
|
|
@@ -3446,7 +3445,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
3446
3445
|
__pyx_r = PyArray_BASE(__pyx_v_self);
|
|
3447
3446
|
goto __pyx_L0;
|
|
3448
3447
|
|
|
3449
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3448
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":366
|
|
3450
3449
|
* # Instead, we use properties that map to the corresponding C-API functions.
|
|
3451
3450
|
*
|
|
3452
3451
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3459,7 +3458,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
3459
3458
|
return __pyx_r;
|
|
3460
3459
|
}
|
|
3461
3460
|
|
|
3462
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3461
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":372
|
|
3463
3462
|
* return PyArray_BASE(self)
|
|
3464
3463
|
*
|
|
3465
3464
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3473,7 +3472,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3473
3472
|
PyArray_Descr *__pyx_t_1;
|
|
3474
3473
|
__Pyx_RefNannySetupContext("descr", 0);
|
|
3475
3474
|
|
|
3476
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3475
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":376
|
|
3477
3476
|
* """Returns an owned reference to the dtype of the array.
|
|
3478
3477
|
* """
|
|
3479
3478
|
* return <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
|
|
@@ -3486,7 +3485,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3486
3485
|
__pyx_r = ((PyArray_Descr *)__pyx_t_1);
|
|
3487
3486
|
goto __pyx_L0;
|
|
3488
3487
|
|
|
3489
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3488
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":372
|
|
3490
3489
|
* return PyArray_BASE(self)
|
|
3491
3490
|
*
|
|
3492
3491
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3501,7 +3500,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3501
3500
|
return __pyx_r;
|
|
3502
3501
|
}
|
|
3503
3502
|
|
|
3504
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3503
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":378
|
|
3505
3504
|
* return <dtype>PyArray_DESCR(self)
|
|
3506
3505
|
*
|
|
3507
3506
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3512,7 +3511,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3512
3511
|
static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx_v_self) {
|
|
3513
3512
|
int __pyx_r;
|
|
3514
3513
|
|
|
3515
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3514
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":382
|
|
3516
3515
|
* """Returns the number of dimensions in the array.
|
|
3517
3516
|
* """
|
|
3518
3517
|
* return PyArray_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -3522,7 +3521,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3522
3521
|
__pyx_r = PyArray_NDIM(__pyx_v_self);
|
|
3523
3522
|
goto __pyx_L0;
|
|
3524
3523
|
|
|
3525
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3524
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":378
|
|
3526
3525
|
* return <dtype>PyArray_DESCR(self)
|
|
3527
3526
|
*
|
|
3528
3527
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3535,7 +3534,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3535
3534
|
return __pyx_r;
|
|
3536
3535
|
}
|
|
3537
3536
|
|
|
3538
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3537
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":384
|
|
3539
3538
|
* return PyArray_NDIM(self)
|
|
3540
3539
|
*
|
|
3541
3540
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3546,7 +3545,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3546
3545
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObject *__pyx_v_self) {
|
|
3547
3546
|
npy_intp *__pyx_r;
|
|
3548
3547
|
|
|
3549
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3548
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":390
|
|
3550
3549
|
* Can return NULL for 0-dimensional arrays.
|
|
3551
3550
|
* """
|
|
3552
3551
|
* return PyArray_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -3556,7 +3555,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
3556
3555
|
__pyx_r = PyArray_DIMS(__pyx_v_self);
|
|
3557
3556
|
goto __pyx_L0;
|
|
3558
3557
|
|
|
3559
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3558
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":384
|
|
3560
3559
|
* return PyArray_NDIM(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3569,7 +3568,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
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|
return __pyx_r;
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":392
|
|
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|
* return PyArray_DIMS(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3580,7 +3579,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
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|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayObject *__pyx_v_self) {
|
|
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|
npy_intp *__pyx_r;
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
|
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|
* The number of elements matches the number of dimensions of the array (ndim).
|
|
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|
* """
|
|
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|
* return PyArray_STRIDES(self) # <<<<<<<<<<<<<<
|
|
@@ -3590,7 +3589,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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|
__pyx_r = PyArray_STRIDES(__pyx_v_self);
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":392
|
|
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|
* return PyArray_DIMS(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3603,7 +3602,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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|
return __pyx_r;
|
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|
|
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|
* return PyArray_STRIDES(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3614,7 +3613,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *__pyx_v_self) {
|
|
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|
npy_intp __pyx_r;
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|
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|
* """Returns the total size (in number of elements) of the array.
|
|
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|
* """
|
|
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|
* return PyArray_SIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3624,7 +3623,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
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3623
|
__pyx_r = PyArray_SIZE(__pyx_v_self);
|
|
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|
goto __pyx_L0;
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
|
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|
* return PyArray_STRIDES(self)
|
|
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|
*
|
|
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3629
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3637,7 +3636,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
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|
return __pyx_r;
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":405
|
|
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|
* return PyArray_SIZE(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3648,7 +3647,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
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|
static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__pyx_v_self) {
|
|
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char *__pyx_r;
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":412
|
|
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|
* of `PyArray_DATA()` instead, which returns a 'void*'.
|
|
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|
* """
|
|
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3653
|
* return PyArray_BYTES(self) # <<<<<<<<<<<<<<
|
|
@@ -3658,7 +3657,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
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3657
|
__pyx_r = PyArray_BYTES(__pyx_v_self);
|
|
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|
goto __pyx_L0;
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":405
|
|
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|
* return PyArray_SIZE(self)
|
|
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3662
|
*
|
|
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3663
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3671,7 +3670,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
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|
return __pyx_r;
|
|
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|
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|
|
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|
* ctypedef long double complex clongdouble_t
|
|
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|
*
|
|
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3676
|
* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
|
|
@@ -3688,7 +3687,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
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|
int __pyx_clineno = 0;
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
|
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|
*
|
|
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|
* cdef inline object PyArray_MultiIterNew1(a):
|
|
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|
* return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<<
|
|
@@ -3702,7 +3701,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
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|
__pyx_t_1 = 0;
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
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|
|
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|
* ctypedef long double complex clongdouble_t
|
|
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|
*
|
|
3708
3707
|
* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
|
|
@@ -3721,7 +3720,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
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3720
|
return __pyx_r;
|
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
|
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|
* return PyArray_MultiIterNew(1, <void*>a)
|
|
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3725
|
*
|
|
3727
3726
|
* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
|
@@ -3738,7 +3737,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
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|
int __pyx_clineno = 0;
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":828
|
|
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|
*
|
|
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3742
|
* cdef inline object PyArray_MultiIterNew2(a, b):
|
|
3744
3743
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<<
|
|
@@ -3752,7 +3751,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3752
3751
|
__pyx_t_1 = 0;
|
|
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|
goto __pyx_L0;
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":827
|
|
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|
* return PyArray_MultiIterNew(1, <void*>a)
|
|
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3756
|
*
|
|
3758
3757
|
* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
|
@@ -3771,7 +3770,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3771
3770
|
return __pyx_r;
|
|
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|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":830
|
|
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3774
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
|
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3775
|
*
|
|
3777
3776
|
* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
|
@@ -3788,7 +3787,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
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|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0);
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":831
|
|
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|
*
|
|
3793
3792
|
* cdef inline object PyArray_MultiIterNew3(a, b, c):
|
|
3794
3793
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<<
|
|
@@ -3802,7 +3801,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
3802
3801
|
__pyx_t_1 = 0;
|
|
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|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":830
|
|
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3805
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
|
3807
3806
|
*
|
|
3808
3807
|
* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
|
@@ -3821,7 +3820,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
3821
3820
|
return __pyx_r;
|
|
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|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":833
|
|
3825
3824
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
|
3826
3825
|
*
|
|
3827
3826
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -3838,7 +3837,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
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|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0);
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":834
|
|
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3841
|
*
|
|
3843
3842
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d):
|
|
3844
3843
|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<<
|
|
@@ -3852,7 +3851,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3852
3851
|
__pyx_t_1 = 0;
|
|
3853
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|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":833
|
|
3856
3855
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
|
3857
3856
|
*
|
|
3858
3857
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -3871,7 +3870,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3871
3870
|
return __pyx_r;
|
|
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|
}
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":836
|
|
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3874
|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
|
3876
3875
|
*
|
|
3877
3876
|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -3888,7 +3887,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
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|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 0);
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":837
|
|
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3891
|
*
|
|
3893
3892
|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
|
|
3894
3893
|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<<
|
|
@@ -3902,7 +3901,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
3902
3901
|
__pyx_t_1 = 0;
|
|
3903
3902
|
goto __pyx_L0;
|
|
3904
3903
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":836
|
|
3906
3905
|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
|
3907
3906
|
*
|
|
3908
3907
|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -3921,7 +3920,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
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3920
|
return __pyx_r;
|
|
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|
}
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":839
|
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
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3925
|
*
|
|
3927
3926
|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -3936,7 +3935,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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3935
|
PyObject *__pyx_t_2;
|
|
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|
__Pyx_RefNannySetupContext("PyDataType_SHAPE", 0);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":840
|
|
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3939
|
*
|
|
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3940
|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
3942
3941
|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -3946,7 +3945,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
3946
3945
|
__pyx_t_1 = PyDataType_HASSUBARRAY(__pyx_v_d);
|
|
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|
if (__pyx_t_1) {
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":841
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
3951
3950
|
* if PyDataType_HASSUBARRAY(d):
|
|
3952
3951
|
* return <tuple>d.subarray.shape # <<<<<<<<<<<<<<
|
|
@@ -3959,7 +3958,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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3958
|
__pyx_r = ((PyObject*)__pyx_t_2);
|
|
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3959
|
goto __pyx_L0;
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":840
|
|
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|
*
|
|
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3963
|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
3965
3964
|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -3968,7 +3967,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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3967
|
*/
|
|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":843
|
|
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|
* return <tuple>d.subarray.shape
|
|
3973
3972
|
* else:
|
|
3974
3973
|
* return () # <<<<<<<<<<<<<<
|
|
@@ -3982,7 +3981,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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3981
|
goto __pyx_L0;
|
|
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|
}
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":839
|
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
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3986
|
*
|
|
3988
3987
|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -3997,7 +3996,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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3996
|
return __pyx_r;
|
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|
}
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1035
|
|
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|
* int _import_umath() except -1
|
|
4002
4001
|
*
|
|
4003
4002
|
* cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
|
|
@@ -4011,7 +4010,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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4010
|
const char *__pyx_filename = NULL;
|
|
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|
int __pyx_clineno = 0;
|
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|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1036
|
|
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4014
|
*
|
|
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4015
|
* cdef inline void set_array_base(ndarray arr, object base) except *:
|
|
4017
4016
|
* Py_INCREF(base) # important to do this before stealing the reference below! # <<<<<<<<<<<<<<
|
|
@@ -4020,7 +4019,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
4020
4019
|
*/
|
|
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4020
|
Py_INCREF(__pyx_v_base);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1037
|
|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *:
|
|
4025
4024
|
* Py_INCREF(base) # important to do this before stealing the reference below!
|
|
4026
4025
|
* PyArray_SetBaseObject(arr, base) # <<<<<<<<<<<<<<
|
|
@@ -4029,7 +4028,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
4029
4028
|
*/
|
|
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4029
|
__pyx_t_1 = PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(1, 1037, __pyx_L1_error)
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1035
|
|
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|
* int _import_umath() except -1
|
|
4034
4033
|
*
|
|
4035
4034
|
* cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
|
|
@@ -4044,7 +4043,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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|
__pyx_L0:;
|
|
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|
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|
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|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1039
|
|
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|
* PyArray_SetBaseObject(arr, base)
|
|
4049
4048
|
*
|
|
4050
4049
|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -4059,7 +4058,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4059
4058
|
int __pyx_t_1;
|
|
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|
__Pyx_RefNannySetupContext("get_array_base", 0);
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1040
|
|
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|
*
|
|
4064
4063
|
* cdef inline object get_array_base(ndarray arr):
|
|
4065
4064
|
* base = PyArray_BASE(arr) # <<<<<<<<<<<<<<
|
|
@@ -4068,7 +4067,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4068
4067
|
*/
|
|
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|
__pyx_v_base = PyArray_BASE(__pyx_v_arr);
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1041
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
4073
4072
|
* base = PyArray_BASE(arr)
|
|
4074
4073
|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -4078,7 +4077,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4078
4077
|
__pyx_t_1 = (__pyx_v_base == NULL);
|
|
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|
if (__pyx_t_1) {
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1042
|
|
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4081
|
* base = PyArray_BASE(arr)
|
|
4083
4082
|
* if base is NULL:
|
|
4084
4083
|
* return None # <<<<<<<<<<<<<<
|
|
@@ -4089,7 +4088,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4089
4088
|
__pyx_r = Py_None; __Pyx_INCREF(Py_None);
|
|
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|
goto __pyx_L0;
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1041
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
4094
4093
|
* base = PyArray_BASE(arr)
|
|
4095
4094
|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -4098,7 +4097,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4098
4097
|
*/
|
|
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4098
|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1043
|
|
4102
4101
|
* if base is NULL:
|
|
4103
4102
|
* return None
|
|
4104
4103
|
* return <object>base # <<<<<<<<<<<<<<
|
|
@@ -4110,7 +4109,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4110
4109
|
__pyx_r = ((PyObject *)__pyx_v_base);
|
|
4111
4110
|
goto __pyx_L0;
|
|
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4111
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1039
|
|
4114
4113
|
* PyArray_SetBaseObject(arr, base)
|
|
4115
4114
|
*
|
|
4116
4115
|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -4125,7 +4124,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4125
4124
|
return __pyx_r;
|
|
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4125
|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1047
|
|
4129
4128
|
* # Versions of the import_* functions which are more suitable for
|
|
4130
4129
|
* # Cython code.
|
|
4131
4130
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4152,7 +4151,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4152
4151
|
int __pyx_clineno = 0;
|
|
4153
4152
|
__Pyx_RefNannySetupContext("import_array", 0);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1048
|
|
4156
4155
|
* # Cython code.
|
|
4157
4156
|
* cdef inline int import_array() except -1:
|
|
4158
4157
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4168,7 +4167,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4168
4167
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4169
4168
|
/*try:*/ {
|
|
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4169
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1049
|
|
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4171
|
* cdef inline int import_array() except -1:
|
|
4173
4172
|
* try:
|
|
4174
4173
|
* __pyx_import_array() # <<<<<<<<<<<<<<
|
|
@@ -4177,7 +4176,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4177
4176
|
*/
|
|
4178
4177
|
__pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1049, __pyx_L3_error)
|
|
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4178
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1048
|
|
4181
4180
|
* # Cython code.
|
|
4182
4181
|
* cdef inline int import_array() except -1:
|
|
4183
4182
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4191,7 +4190,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4191
4190
|
goto __pyx_L8_try_end;
|
|
4192
4191
|
__pyx_L3_error:;
|
|
4193
4192
|
|
|
4194
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4193
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1050
|
|
4195
4194
|
* try:
|
|
4196
4195
|
* __pyx_import_array()
|
|
4197
4196
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4206,7 +4205,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4206
4205
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4207
4206
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
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4207
|
|
|
4209
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4208
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1051
|
|
4210
4209
|
* __pyx_import_array()
|
|
4211
4210
|
* except Exception:
|
|
4212
4211
|
* raise ImportError("numpy._core.multiarray failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4231,7 +4230,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4231
4230
|
}
|
|
4232
4231
|
goto __pyx_L5_except_error;
|
|
4233
4232
|
|
|
4234
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4233
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1048
|
|
4235
4234
|
* # Cython code.
|
|
4236
4235
|
* cdef inline int import_array() except -1:
|
|
4237
4236
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4247,7 +4246,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4247
4246
|
__pyx_L8_try_end:;
|
|
4248
4247
|
}
|
|
4249
4248
|
|
|
4250
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4249
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1047
|
|
4251
4250
|
* # Versions of the import_* functions which are more suitable for
|
|
4252
4251
|
* # Cython code.
|
|
4253
4252
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4272,7 +4271,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4272
4271
|
return __pyx_r;
|
|
4273
4272
|
}
|
|
4274
4273
|
|
|
4275
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4274
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1053
|
|
4276
4275
|
* raise ImportError("numpy._core.multiarray failed to import")
|
|
4277
4276
|
*
|
|
4278
4277
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4299,7 +4298,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4299
4298
|
int __pyx_clineno = 0;
|
|
4300
4299
|
__Pyx_RefNannySetupContext("import_umath", 0);
|
|
4301
4300
|
|
|
4302
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4301
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1054
|
|
4303
4302
|
*
|
|
4304
4303
|
* cdef inline int import_umath() except -1:
|
|
4305
4304
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4315,7 +4314,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4315
4314
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4316
4315
|
/*try:*/ {
|
|
4317
4316
|
|
|
4318
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4317
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1055
|
|
4319
4318
|
* cdef inline int import_umath() except -1:
|
|
4320
4319
|
* try:
|
|
4321
4320
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -4324,7 +4323,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4324
4323
|
*/
|
|
4325
4324
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1055, __pyx_L3_error)
|
|
4326
4325
|
|
|
4327
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4326
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1054
|
|
4328
4327
|
*
|
|
4329
4328
|
* cdef inline int import_umath() except -1:
|
|
4330
4329
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4338,7 +4337,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4338
4337
|
goto __pyx_L8_try_end;
|
|
4339
4338
|
__pyx_L3_error:;
|
|
4340
4339
|
|
|
4341
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4340
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1056
|
|
4342
4341
|
* try:
|
|
4343
4342
|
* _import_umath()
|
|
4344
4343
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4353,7 +4352,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4353
4352
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4354
4353
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4355
4354
|
|
|
4356
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4355
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1057
|
|
4357
4356
|
* _import_umath()
|
|
4358
4357
|
* except Exception:
|
|
4359
4358
|
* raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4378,7 +4377,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4378
4377
|
}
|
|
4379
4378
|
goto __pyx_L5_except_error;
|
|
4380
4379
|
|
|
4381
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4380
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1054
|
|
4382
4381
|
*
|
|
4383
4382
|
* cdef inline int import_umath() except -1:
|
|
4384
4383
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4394,7 +4393,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4394
4393
|
__pyx_L8_try_end:;
|
|
4395
4394
|
}
|
|
4396
4395
|
|
|
4397
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4396
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1053
|
|
4398
4397
|
* raise ImportError("numpy._core.multiarray failed to import")
|
|
4399
4398
|
*
|
|
4400
4399
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4419,7 +4418,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4419
4418
|
return __pyx_r;
|
|
4420
4419
|
}
|
|
4421
4420
|
|
|
4422
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4421
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1059
|
|
4423
4422
|
* raise ImportError("numpy._core.umath failed to import")
|
|
4424
4423
|
*
|
|
4425
4424
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4446,7 +4445,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4446
4445
|
int __pyx_clineno = 0;
|
|
4447
4446
|
__Pyx_RefNannySetupContext("import_ufunc", 0);
|
|
4448
4447
|
|
|
4449
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4448
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1060
|
|
4450
4449
|
*
|
|
4451
4450
|
* cdef inline int import_ufunc() except -1:
|
|
4452
4451
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4462,7 +4461,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4462
4461
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4463
4462
|
/*try:*/ {
|
|
4464
4463
|
|
|
4465
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4464
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1061
|
|
4466
4465
|
* cdef inline int import_ufunc() except -1:
|
|
4467
4466
|
* try:
|
|
4468
4467
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -4471,7 +4470,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4471
4470
|
*/
|
|
4472
4471
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1061, __pyx_L3_error)
|
|
4473
4472
|
|
|
4474
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4473
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1060
|
|
4475
4474
|
*
|
|
4476
4475
|
* cdef inline int import_ufunc() except -1:
|
|
4477
4476
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4485,7 +4484,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4485
4484
|
goto __pyx_L8_try_end;
|
|
4486
4485
|
__pyx_L3_error:;
|
|
4487
4486
|
|
|
4488
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4487
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1062
|
|
4489
4488
|
* try:
|
|
4490
4489
|
* _import_umath()
|
|
4491
4490
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4500,7 +4499,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4500
4499
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4501
4500
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4502
4501
|
|
|
4503
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4502
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1063
|
|
4504
4503
|
* _import_umath()
|
|
4505
4504
|
* except Exception:
|
|
4506
4505
|
* raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4525,7 +4524,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4525
4524
|
}
|
|
4526
4525
|
goto __pyx_L5_except_error;
|
|
4527
4526
|
|
|
4528
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4527
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1060
|
|
4529
4528
|
*
|
|
4530
4529
|
* cdef inline int import_ufunc() except -1:
|
|
4531
4530
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4541,7 +4540,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4541
4540
|
__pyx_L8_try_end:;
|
|
4542
4541
|
}
|
|
4543
4542
|
|
|
4544
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4543
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1059
|
|
4545
4544
|
* raise ImportError("numpy._core.umath failed to import")
|
|
4546
4545
|
*
|
|
4547
4546
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4566,7 +4565,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4566
4565
|
return __pyx_r;
|
|
4567
4566
|
}
|
|
4568
4567
|
|
|
4569
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4568
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1066
|
|
4570
4569
|
*
|
|
4571
4570
|
*
|
|
4572
4571
|
* cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4577,7 +4576,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4577
4576
|
static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
|
|
4578
4577
|
int __pyx_r;
|
|
4579
4578
|
|
|
4580
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4579
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1078
|
|
4581
4580
|
* bool
|
|
4582
4581
|
* """
|
|
4583
4582
|
* return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -4587,7 +4586,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4587
4586
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
|
|
4588
4587
|
goto __pyx_L0;
|
|
4589
4588
|
|
|
4590
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4589
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1066
|
|
4591
4590
|
*
|
|
4592
4591
|
*
|
|
4593
4592
|
* cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4600,7 +4599,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4600
4599
|
return __pyx_r;
|
|
4601
4600
|
}
|
|
4602
4601
|
|
|
4603
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4602
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1081
|
|
4604
4603
|
*
|
|
4605
4604
|
*
|
|
4606
4605
|
* cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4611,7 +4610,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4611
4610
|
static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
|
|
4612
4611
|
int __pyx_r;
|
|
4613
4612
|
|
|
4614
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4613
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1093
|
|
4615
4614
|
* bool
|
|
4616
4615
|
* """
|
|
4617
4616
|
* return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -4621,7 +4620,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4621
4620
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
|
|
4622
4621
|
goto __pyx_L0;
|
|
4623
4622
|
|
|
4624
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4623
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1081
|
|
4625
4624
|
*
|
|
4626
4625
|
*
|
|
4627
4626
|
* cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4634,7 +4633,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4634
4633
|
return __pyx_r;
|
|
4635
4634
|
}
|
|
4636
4635
|
|
|
4637
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4636
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1096
|
|
4638
4637
|
*
|
|
4639
4638
|
*
|
|
4640
4639
|
* cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4645,7 +4644,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4645
4644
|
static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
|
|
4646
4645
|
npy_datetime __pyx_r;
|
|
4647
4646
|
|
|
4648
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4647
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1103
|
|
4649
4648
|
* also needed. That can be found using `get_datetime64_unit`.
|
|
4650
4649
|
* """
|
|
4651
4650
|
* return (<PyDatetimeScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -4655,7 +4654,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4655
4654
|
__pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
|
|
4656
4655
|
goto __pyx_L0;
|
|
4657
4656
|
|
|
4658
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4657
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1096
|
|
4659
4658
|
*
|
|
4660
4659
|
*
|
|
4661
4660
|
* cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4668,7 +4667,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4668
4667
|
return __pyx_r;
|
|
4669
4668
|
}
|
|
4670
4669
|
|
|
4671
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4670
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1106
|
|
4672
4671
|
*
|
|
4673
4672
|
*
|
|
4674
4673
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4679,7 +4678,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4679
4678
|
static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
|
|
4680
4679
|
npy_timedelta __pyx_r;
|
|
4681
4680
|
|
|
4682
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4681
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1110
|
|
4683
4682
|
* returns the int64 value underlying scalar numpy timedelta64 object
|
|
4684
4683
|
* """
|
|
4685
4684
|
* return (<PyTimedeltaScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -4689,7 +4688,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4689
4688
|
__pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
|
|
4690
4689
|
goto __pyx_L0;
|
|
4691
4690
|
|
|
4692
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4691
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1106
|
|
4693
4692
|
*
|
|
4694
4693
|
*
|
|
4695
4694
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4702,7 +4701,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4702
4701
|
return __pyx_r;
|
|
4703
4702
|
}
|
|
4704
4703
|
|
|
4705
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4704
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1113
|
|
4706
4705
|
*
|
|
4707
4706
|
*
|
|
4708
4707
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4713,7 +4712,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4713
4712
|
static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
|
|
4714
4713
|
NPY_DATETIMEUNIT __pyx_r;
|
|
4715
4714
|
|
|
4716
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4715
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1117
|
|
4717
4716
|
* returns the unit part of the dtype for a numpy datetime64 object.
|
|
4718
4717
|
* """
|
|
4719
4718
|
* return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base # <<<<<<<<<<<<<<
|
|
@@ -4723,7 +4722,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
4723
4722
|
__pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
|
|
4724
4723
|
goto __pyx_L0;
|
|
4725
4724
|
|
|
4726
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4725
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-ujjtimg2/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1113
|
|
4727
4726
|
*
|
|
4728
4727
|
*
|
|
4729
4728
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4736,7 +4735,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
4736
4735
|
return __pyx_r;
|
|
4737
4736
|
}
|
|
4738
4737
|
|
|
4739
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4738
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":9
|
|
4740
4739
|
* from libc.stdint cimport int32_t
|
|
4741
4740
|
*
|
|
4742
4741
|
* def seqlength(seqdata): # <<<<<<<<<<<<<<
|
|
@@ -4783,32 +4782,32 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
4783
4782
|
{
|
|
4784
4783
|
PyObject ** const __pyx_pyargnames[] = {&__pyx_mstate_global->__pyx_n_u_seqdata,0};
|
|
4785
4784
|
const Py_ssize_t __pyx_kwds_len = (__pyx_kwds) ? __Pyx_NumKwargs_FASTCALL(__pyx_kwds) : 0;
|
|
4786
|
-
if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0,
|
|
4785
|
+
if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4787
4786
|
if (__pyx_kwds_len > 0) {
|
|
4788
4787
|
switch (__pyx_nargs) {
|
|
4789
4788
|
case 1:
|
|
4790
4789
|
values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
|
|
4791
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0,
|
|
4790
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4792
4791
|
CYTHON_FALLTHROUGH;
|
|
4793
4792
|
case 0: break;
|
|
4794
4793
|
default: goto __pyx_L5_argtuple_error;
|
|
4795
4794
|
}
|
|
4796
4795
|
const Py_ssize_t kwd_pos_args = __pyx_nargs;
|
|
4797
|
-
if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqlength", 0) < 0) __PYX_ERR(0,
|
|
4796
|
+
if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqlength", 0) < 0) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4798
4797
|
for (Py_ssize_t i = __pyx_nargs; i < 1; i++) {
|
|
4799
|
-
if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, i); __PYX_ERR(0,
|
|
4798
|
+
if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, i); __PYX_ERR(0, 9, __pyx_L3_error) }
|
|
4800
4799
|
}
|
|
4801
4800
|
} else if (unlikely(__pyx_nargs != 1)) {
|
|
4802
4801
|
goto __pyx_L5_argtuple_error;
|
|
4803
4802
|
} else {
|
|
4804
4803
|
values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
|
|
4805
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0,
|
|
4804
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4806
4805
|
}
|
|
4807
4806
|
__pyx_v_seqdata = values[0];
|
|
4808
4807
|
}
|
|
4809
4808
|
goto __pyx_L6_skip;
|
|
4810
4809
|
__pyx_L5_argtuple_error:;
|
|
4811
|
-
__Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, __pyx_nargs); __PYX_ERR(0,
|
|
4810
|
+
__Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4812
4811
|
__pyx_L6_skip:;
|
|
4813
4812
|
goto __pyx_L4_argument_unpacking_done;
|
|
4814
4813
|
__pyx_L3_error:;
|
|
@@ -4856,33 +4855,33 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4856
4855
|
__pyx_pybuffernd_seqarray_long.data = NULL;
|
|
4857
4856
|
__pyx_pybuffernd_seqarray_long.rcbuffer = &__pyx_pybuffer_seqarray_long;
|
|
4858
4857
|
|
|
4859
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4858
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":10
|
|
4860
4859
|
*
|
|
4861
4860
|
* def seqlength(seqdata):
|
|
4862
4861
|
* if isinstance(seqdata, SequenceData): # <<<<<<<<<<<<<<
|
|
4863
4862
|
* seqdata = seqdata.seqdata.replace(np.nan, -99)
|
|
4864
4863
|
*
|
|
4865
4864
|
*/
|
|
4866
|
-
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4865
|
+
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 10, __pyx_L1_error)
|
|
4867
4866
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4868
|
-
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_1); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0,
|
|
4867
|
+
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_1); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0, 10, __pyx_L1_error)
|
|
4869
4868
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
4870
4869
|
if (__pyx_t_2) {
|
|
4871
4870
|
|
|
4872
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4871
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":11
|
|
4873
4872
|
* def seqlength(seqdata):
|
|
4874
4873
|
* if isinstance(seqdata, SequenceData):
|
|
4875
4874
|
* seqdata = seqdata.seqdata.replace(np.nan, -99) # <<<<<<<<<<<<<<
|
|
4876
4875
|
*
|
|
4877
4876
|
* cdef cnp.ndarray[int32_t, ndim=2] seqarray_long
|
|
4878
4877
|
*/
|
|
4879
|
-
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_seqdata, __pyx_mstate_global->__pyx_n_u_seqdata); if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
|
|
4878
|
+
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_seqdata, __pyx_mstate_global->__pyx_n_u_seqdata); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4880
4879
|
__Pyx_GOTREF(__pyx_t_4);
|
|
4881
4880
|
__pyx_t_3 = __pyx_t_4;
|
|
4882
4881
|
__Pyx_INCREF(__pyx_t_3);
|
|
4883
|
-
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
|
|
4882
|
+
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4884
4883
|
__Pyx_GOTREF(__pyx_t_5);
|
|
4885
|
-
__pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_nan); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
|
|
4884
|
+
__pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_nan); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4886
4885
|
__Pyx_GOTREF(__pyx_t_6);
|
|
4887
4886
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
4888
4887
|
__pyx_t_7 = 0;
|
|
@@ -4892,13 +4891,13 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4892
4891
|
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
4893
4892
|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
|
4894
4893
|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
4895
|
-
if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4894
|
+
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4896
4895
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4897
4896
|
}
|
|
4898
4897
|
__Pyx_DECREF_SET(__pyx_v_seqdata, __pyx_t_1);
|
|
4899
4898
|
__pyx_t_1 = 0;
|
|
4900
4899
|
|
|
4901
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4900
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":10
|
|
4902
4901
|
*
|
|
4903
4902
|
* def seqlength(seqdata):
|
|
4904
4903
|
* if isinstance(seqdata, SequenceData): # <<<<<<<<<<<<<<
|
|
@@ -4907,23 +4906,23 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4907
4906
|
*/
|
|
4908
4907
|
}
|
|
4909
4908
|
|
|
4910
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4909
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":15
|
|
4911
4910
|
* cdef cnp.ndarray[int32_t, ndim=2] seqarray_long
|
|
4912
4911
|
*
|
|
4913
4912
|
* if isinstance(seqdata, pd.DataFrame): # <<<<<<<<<<<<<<
|
|
4914
4913
|
* seqarray_long = seqdata.to_numpy(dtype=np.int32)
|
|
4915
4914
|
* return np.sum(seqarray_long > 0, axis=1)
|
|
4916
4915
|
*/
|
|
4917
|
-
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_pd); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4916
|
+
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_pd); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
|
|
4918
4917
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4919
|
-
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_DataFrame); if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
|
|
4918
|
+
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_DataFrame); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 15, __pyx_L1_error)
|
|
4920
4919
|
__Pyx_GOTREF(__pyx_t_4);
|
|
4921
4920
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
4922
|
-
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_4); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0,
|
|
4921
|
+
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_4); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0, 15, __pyx_L1_error)
|
|
4923
4922
|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
4924
4923
|
if (__pyx_t_2) {
|
|
4925
4924
|
|
|
4926
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4925
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":16
|
|
4927
4926
|
*
|
|
4928
4927
|
* if isinstance(seqdata, pd.DataFrame):
|
|
4929
4928
|
* seqarray_long = seqdata.to_numpy(dtype=np.int32) # <<<<<<<<<<<<<<
|
|
@@ -4932,25 +4931,25 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4932
4931
|
*/
|
|
4933
4932
|
__pyx_t_1 = __pyx_v_seqdata;
|
|
4934
4933
|
__Pyx_INCREF(__pyx_t_1);
|
|
4935
|
-
__Pyx_GetModuleGlobalName(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
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__Pyx_GetModuleGlobalName(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 16, __pyx_L1_error)
|
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__Pyx_GOTREF(__pyx_t_6);
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__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
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__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 16, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_3);
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__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
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__pyx_t_7 = 0;
|
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|
{
|
|
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|
PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_1, NULL};
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-
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
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__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 16, __pyx_L1_error)
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4943
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__Pyx_GOTREF(__pyx_t_6);
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4946
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__pyx_t_4 = __Pyx_Object_VectorcallMethod_CallFromBuilder(__pyx_mstate_global->__pyx_n_u_to_numpy, __pyx_callargs+__pyx_t_7, (1-__pyx_t_7) | (1*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_6);
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__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
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-
if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
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if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 16, __pyx_L1_error)
|
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|
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|
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|
}
|
|
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|
-
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0,
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4952
|
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if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 16, __pyx_L1_error)
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4953
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{
|
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|
__Pyx_BufFmt_StackElem __pyx_stack[1];
|
|
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4955
|
__Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer);
|
|
@@ -4966,12 +4965,12 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
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4965
|
__pyx_t_9 = __pyx_t_10 = __pyx_t_11 = 0;
|
|
4967
4966
|
}
|
|
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4967
|
__pyx_pybuffernd_seqarray_long.diminfo[0].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_seqarray_long.diminfo[0].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_seqarray_long.diminfo[1].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_seqarray_long.diminfo[1].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[1];
|
|
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|
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if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0,
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+
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 16, __pyx_L1_error)
|
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4969
|
}
|
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4970
|
__pyx_v_seqarray_long = ((PyArrayObject *)__pyx_t_4);
|
|
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4971
|
__pyx_t_4 = 0;
|
|
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4972
|
|
|
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|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
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|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":17
|
|
4975
4974
|
* if isinstance(seqdata, pd.DataFrame):
|
|
4976
4975
|
* seqarray_long = seqdata.to_numpy(dtype=np.int32)
|
|
4977
4976
|
* return np.sum(seqarray_long > 0, axis=1) # <<<<<<<<<<<<<<
|
|
@@ -4980,12 +4979,12 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
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4979
|
*/
|
|
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4980
|
__Pyx_XDECREF(__pyx_r);
|
|
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4981
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__pyx_t_6 = NULL;
|
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|
-
__Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
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4982
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__Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 17, __pyx_L1_error)
|
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4983
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__Pyx_GOTREF(__pyx_t_3);
|
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-
__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
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4984
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__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 17, __pyx_L1_error)
|
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__Pyx_GOTREF(__pyx_t_1);
|
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__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
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|
-
__pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
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__pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 17, __pyx_L1_error)
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|
__pyx_t_7 = 1;
|
|
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4989
|
#if CYTHON_UNPACK_METHODS
|
|
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4990
|
if (unlikely(PyMethod_Check(__pyx_t_1))) {
|
|
@@ -5000,22 +4999,22 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5000
4999
|
#endif
|
|
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|
{
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5002
5001
|
PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_6, __pyx_t_3};
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5003
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__Pyx_GOTREF(__pyx_t_5);
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if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_5, __pyx_callargs+2, 0) < 0) __PYX_ERR(0,
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5005
|
__pyx_t_4 = __Pyx_Object_Vectorcall_CallFromBuilder(__pyx_t_1, __pyx_callargs+__pyx_t_7, (2-__pyx_t_7) | (__pyx_t_7*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_5);
|
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5006
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__Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
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__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
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|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 17, __pyx_L1_error)
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|
__Pyx_GOTREF(__pyx_t_4);
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5012
|
}
|
|
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5013
|
__pyx_r = __pyx_t_4;
|
|
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5014
|
__pyx_t_4 = 0;
|
|
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5015
|
goto __pyx_L0;
|
|
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5016
|
|
|
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|
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/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
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|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":15
|
|
5019
5018
|
* cdef cnp.ndarray[int32_t, ndim=2] seqarray_long
|
|
5020
5019
|
*
|
|
5021
5020
|
* if isinstance(seqdata, pd.DataFrame): # <<<<<<<<<<<<<<
|
|
@@ -5024,7 +5023,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
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5023
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*/
|
|
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|
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|
|
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5025
|
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|
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/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
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|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":20
|
|
5028
5027
|
*
|
|
5029
5028
|
* else:
|
|
5030
5029
|
* seqarray_long = seqdata # <<<<<<<<<<<<<<
|
|
@@ -5033,7 +5032,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
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5032
|
/*else*/ {
|
|
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5033
|
__pyx_t_4 = __pyx_v_seqdata;
|
|
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5034
|
__Pyx_INCREF(__pyx_t_4);
|
|
5036
|
-
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0,
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5035
|
+
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 20, __pyx_L1_error)
|
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5036
|
{
|
|
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|
__Pyx_BufFmt_StackElem __pyx_stack[1];
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|
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5038
|
__Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer);
|
|
@@ -5049,24 +5048,24 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5049
5048
|
__pyx_t_11 = __pyx_t_10 = __pyx_t_9 = 0;
|
|
5050
5049
|
}
|
|
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5050
|
__pyx_pybuffernd_seqarray_long.diminfo[0].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_seqarray_long.diminfo[0].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_seqarray_long.diminfo[1].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_seqarray_long.diminfo[1].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[1];
|
|
5052
|
-
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0,
|
|
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|
+
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 20, __pyx_L1_error)
|
|
5053
5052
|
}
|
|
5054
5053
|
__pyx_v_seqarray_long = ((PyArrayObject *)__pyx_t_4);
|
|
5055
5054
|
__pyx_t_4 = 0;
|
|
5056
5055
|
|
|
5057
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5056
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":21
|
|
5058
5057
|
* else:
|
|
5059
5058
|
* seqarray_long = seqdata
|
|
5060
5059
|
* return np.sum(seqarray_long > 0, axis=1) # <<<<<<<<<<<<<<
|
|
5061
5060
|
*/
|
|
5062
5061
|
__Pyx_XDECREF(__pyx_r);
|
|
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5062
|
__pyx_t_1 = NULL;
|
|
5064
|
-
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|
|
5063
|
+
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5065
5064
|
__Pyx_GOTREF(__pyx_t_5);
|
|
5066
|
-
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
5065
|
+
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5067
5066
|
__Pyx_GOTREF(__pyx_t_3);
|
|
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5067
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
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|
-
__pyx_t_5 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
|
|
5068
|
+
__pyx_t_5 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
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5069
|
__pyx_t_7 = 1;
|
|
5071
5070
|
#if CYTHON_UNPACK_METHODS
|
|
5072
5071
|
if (unlikely(PyMethod_Check(__pyx_t_3))) {
|
|
@@ -5081,15 +5080,15 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5081
5080
|
#endif
|
|
5082
5081
|
{
|
|
5083
5082
|
PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_1, __pyx_t_5};
|
|
5084
|
-
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
|
|
5083
|
+
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5085
5084
|
__Pyx_GOTREF(__pyx_t_6);
|
|
5086
|
-
if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_6, __pyx_callargs+2, 0) < 0) __PYX_ERR(0,
|
|
5085
|
+
if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_6, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5087
5086
|
__pyx_t_4 = __Pyx_Object_Vectorcall_CallFromBuilder(__pyx_t_3, __pyx_callargs+__pyx_t_7, (2-__pyx_t_7) | (__pyx_t_7*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_6);
|
|
5088
5087
|
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
5089
5088
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
5090
5089
|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
|
5091
5090
|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
5092
|
-
if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
|
|
5091
|
+
if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5093
5092
|
__Pyx_GOTREF(__pyx_t_4);
|
|
5094
5093
|
}
|
|
5095
5094
|
__pyx_r = __pyx_t_4;
|
|
@@ -5097,7 +5096,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5097
5096
|
goto __pyx_L0;
|
|
5098
5097
|
}
|
|
5099
5098
|
|
|
5100
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5099
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":9
|
|
5101
5100
|
* from libc.stdint cimport int32_t
|
|
5102
5101
|
*
|
|
5103
5102
|
* def seqlength(seqdata): # <<<<<<<<<<<<<<
|
|
@@ -5654,61 +5653,63 @@ __Pyx_RefNannySetupContext("PyInit_seqlength", 0);
|
|
|
5654
5653
|
(void)__Pyx_modinit_function_import_code(__pyx_mstate);
|
|
5655
5654
|
/*--- Execution code ---*/
|
|
5656
5655
|
|
|
5657
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5656
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":2
|
|
5657
|
+
* # cython: np_import_array=True
|
|
5658
5658
|
* import pandas as pd # <<<<<<<<<<<<<<
|
|
5659
5659
|
* import numpy as np
|
|
5660
5660
|
* cimport numpy as cnp
|
|
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5661
|
*/
|
|
5662
|
-
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_pandas, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
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+
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_pandas, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 2, __pyx_L1_error)
|
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__Pyx_GOTREF(__pyx_t_2);
|
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-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_pd, __pyx_t_2) < 0) __PYX_ERR(0,
|
|
5664
|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_pd, __pyx_t_2) < 0) __PYX_ERR(0, 2, __pyx_L1_error)
|
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__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
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5666
|
|
|
5667
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5667
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":3
|
|
5668
|
+
* # cython: np_import_array=True
|
|
5668
5669
|
* import pandas as pd
|
|
5669
5670
|
* import numpy as np # <<<<<<<<<<<<<<
|
|
5670
5671
|
* cimport numpy as cnp
|
|
5671
|
-
*
|
|
5672
|
+
*
|
|
5672
5673
|
*/
|
|
5673
|
-
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
5674
|
+
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 3, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_2);
|
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|
-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0,
|
|
5676
|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0, 3, __pyx_L1_error)
|
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|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
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5678
|
|
|
5678
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5679
|
-
* import numpy as np
|
|
5679
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":6
|
|
5680
5680
|
* cimport numpy as cnp
|
|
5681
|
+
*
|
|
5681
5682
|
* from sequenzo.define_sequence_data import SequenceData # <<<<<<<<<<<<<<
|
|
5682
5683
|
* from libc.stdint cimport int32_t
|
|
5683
5684
|
*
|
|
5684
5685
|
*/
|
|
5685
|
-
__pyx_t_2 = __Pyx_PyList_Pack(1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
5686
|
+
__pyx_t_2 = __Pyx_PyList_Pack(1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 6, __pyx_L1_error)
|
|
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|
__Pyx_GOTREF(__pyx_t_2);
|
|
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|
-
__pyx_t_3 = __Pyx_Import(__pyx_mstate_global->__pyx_n_u_sequenzo_define_sequence_data, __pyx_t_2, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
5688
|
+
__pyx_t_3 = __Pyx_Import(__pyx_mstate_global->__pyx_n_u_sequenzo_define_sequence_data, __pyx_t_2, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 6, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_3);
|
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|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
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|
-
__pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
5691
|
+
__pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 6, __pyx_L1_error)
|
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__Pyx_GOTREF(__pyx_t_2);
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|
-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_SequenceData, __pyx_t_2) < 0) __PYX_ERR(0,
|
|
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|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_SequenceData, __pyx_t_2) < 0) __PYX_ERR(0, 6, __pyx_L1_error)
|
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|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
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|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
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5696
|
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|
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|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5697
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":9
|
|
5697
5698
|
* from libc.stdint cimport int32_t
|
|
5698
5699
|
*
|
|
5699
5700
|
* def seqlength(seqdata): # <<<<<<<<<<<<<<
|
|
5700
5701
|
* if isinstance(seqdata, SequenceData):
|
|
5701
5702
|
* seqdata = seqdata.seqdata.replace(np.nan, -99)
|
|
5702
5703
|
*/
|
|
5703
|
-
__pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_9seqlength_1seqlength, 0, __pyx_mstate_global->__pyx_n_u_seqlength, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0])); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
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|
+
__pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_9seqlength_1seqlength, 0, __pyx_mstate_global->__pyx_n_u_seqlength, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0])); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 9, __pyx_L1_error)
|
|
5704
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|
__Pyx_GOTREF(__pyx_t_3);
|
|
5705
|
-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqlength, __pyx_t_3) < 0) __PYX_ERR(0,
|
|
5706
|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqlength, __pyx_t_3) < 0) __PYX_ERR(0, 9, __pyx_L1_error)
|
|
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|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
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5708
|
|
|
5708
5709
|
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":1
|
|
5709
|
-
*
|
|
5710
|
+
* # cython: np_import_array=True # <<<<<<<<<<<<<<
|
|
5711
|
+
* import pandas as pd
|
|
5710
5712
|
* import numpy as np
|
|
5711
|
-
* cimport numpy as cnp
|
|
5712
5713
|
*/
|
|
5713
5714
|
__pyx_t_3 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
5714
5715
|
__Pyx_GOTREF(__pyx_t_3);
|
|
@@ -5856,7 +5857,7 @@ static int __Pyx_InitConstants(__pyx_mstatetype *__pyx_mstate) {
|
|
|
5856
5857
|
unsigned int num_kwonly_args : 1;
|
|
5857
5858
|
unsigned int nlocals : 2;
|
|
5858
5859
|
unsigned int flags : 10;
|
|
5859
|
-
unsigned int first_line :
|
|
5860
|
+
unsigned int first_line : 4;
|
|
5860
5861
|
unsigned int line_table_length : 12;
|
|
5861
5862
|
} __Pyx_PyCode_New_function_description;
|
|
5862
5863
|
/* NewCodeObj.proto */
|
|
@@ -5874,7 +5875,7 @@ static int __Pyx_CreateCodeObjects(__pyx_mstatetype *__pyx_mstate) {
|
|
|
5874
5875
|
PyObject* tuple_dedup_map = PyDict_New();
|
|
5875
5876
|
if (unlikely(!tuple_dedup_map)) return -1;
|
|
5876
5877
|
{
|
|
5877
|
-
const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS),
|
|
5878
|
+
const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 9, 105};
|
|
5878
5879
|
PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_seqdata, __pyx_mstate->__pyx_n_u_seqarray_long};
|
|
5879
5880
|
__pyx_mstate_global->__pyx_codeobj_tab[0] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_sequenzo_dissimilarity_measures_2, __pyx_mstate->__pyx_n_u_seqlength, __pyx_k_z_1_G1_z_2Q_y_r_r_QnBc_a_r_QnBc, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[0])) goto bad;
|
|
5880
5881
|
}
|