sequenzo 0.1.19__cp311-cp311-win_amd64.whl → 0.1.21__cp311-cp311-win_amd64.whl
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- sequenzo/big_data/clara/utils/get_weighted_diss.c +192 -191
- sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd +0 -0
- sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd +0 -0
- sequenzo/clustering/hierarchical_clustering.py +2 -2
- sequenzo/define_sequence_data.py +4 -4
- sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -1
- sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +169 -169
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.c +231 -230
- sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.c +324 -323
- sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.c +324 -323
- sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.c +224 -222
- sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd +0 -0
- sequenzo/multidomain/association_between_domains.py +1 -1
- sequenzo/multidomain/combt.py +4 -4
- sequenzo/multidomain/dat.py +11 -3
- sequenzo/multidomain/idcd.py +0 -2
- sequenzo/multidomain/linked_polyad.py +3 -4
- sequenzo/prefix_tree/__init__.py +1 -1
- sequenzo/prefix_tree/individual_level_indicators.py +2 -2
- sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +2 -2
- sequenzo/sequence_characteristics/plot_characteristics.py +2 -2
- sequenzo/sequence_characteristics/simple_characteristics.py +2 -2
- sequenzo/suffix_tree/__init__.py +1 -1
- sequenzo/suffix_tree/individual_level_indicators.py +3 -3
- sequenzo/visualization/plot_single_medoid.py +2 -2
- sequenzo/visualization/plot_transition_matrix.py +1 -1
- sequenzo/visualization/utils/utils.py +2 -2
- sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +1 -1
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/METADATA +37 -6
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/RECORD +39 -45
- sequenzo/big_data/clara/utils/get_weighted_diss.pyx +0 -16
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.pyx +0 -95
- sequenzo/dissimilarity_measures/utils/seqconc.pyx +0 -26
- sequenzo/dissimilarity_measures/utils/seqdss.pyx +0 -33
- sequenzo/dissimilarity_measures/utils/seqdur.pyx +0 -34
- sequenzo/dissimilarity_measures/utils/seqlength.pyx +0 -19
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/WHEEL +0 -0
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/licenses/LICENSE +0 -0
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/top_level.txt +0 -0
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|
typedef npy_double __pyx_t_5numpy_double_t;
|
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|
|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":769
|
|
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|
* ctypedef npy_double float_t
|
|
1747
1747
|
* ctypedef npy_double double_t
|
|
1748
1748
|
* ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
|
|
@@ -3069,7 +3069,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
|
|
|
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3069
|
#endif
|
|
3070
3070
|
/* #### Code section: module_code ### */
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":242
|
|
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|
* cdef int type_num
|
|
3074
3074
|
*
|
|
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3075
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3080,7 +3080,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
|
|
|
3080
3080
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_Descr *__pyx_v_self) {
|
|
3081
3081
|
npy_intp __pyx_r;
|
|
3082
3082
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":244
|
|
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3084
|
* @property
|
|
3085
3085
|
* cdef inline npy_intp itemsize(self) noexcept nogil:
|
|
3086
3086
|
* return PyDataType_ELSIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3090,7 +3090,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3090
3090
|
__pyx_r = PyDataType_ELSIZE(__pyx_v_self);
|
|
3091
3091
|
goto __pyx_L0;
|
|
3092
3092
|
|
|
3093
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":242
|
|
3094
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|
* cdef int type_num
|
|
3095
3095
|
*
|
|
3096
3096
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3103,7 +3103,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3103
3103
|
return __pyx_r;
|
|
3104
3104
|
}
|
|
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3105
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3106
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
|
|
3107
3107
|
* return PyDataType_ELSIZE(self)
|
|
3108
3108
|
*
|
|
3109
3109
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3114,7 +3114,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3114
3114
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray_Descr *__pyx_v_self) {
|
|
3115
3115
|
npy_intp __pyx_r;
|
|
3116
3116
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":248
|
|
3118
3118
|
* @property
|
|
3119
3119
|
* cdef inline npy_intp alignment(self) noexcept nogil:
|
|
3120
3120
|
* return PyDataType_ALIGNMENT(self) # <<<<<<<<<<<<<<
|
|
@@ -3124,7 +3124,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
|
|
|
3124
3124
|
__pyx_r = PyDataType_ALIGNMENT(__pyx_v_self);
|
|
3125
3125
|
goto __pyx_L0;
|
|
3126
3126
|
|
|
3127
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3127
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
|
|
3128
3128
|
* return PyDataType_ELSIZE(self)
|
|
3129
3129
|
*
|
|
3130
3130
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3137,7 +3137,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
|
|
|
3137
3137
|
return __pyx_r;
|
|
3138
3138
|
}
|
|
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3139
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3140
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
|
|
3141
3141
|
* # Use fields/names with care as they may be NULL. You must check
|
|
3142
3142
|
* # for this using PyDataType_HASFIELDS.
|
|
3143
3143
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3151,7 +3151,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3151
3151
|
PyObject *__pyx_t_1;
|
|
3152
3152
|
__Pyx_RefNannySetupContext("fields", 0);
|
|
3153
3153
|
|
|
3154
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3154
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":254
|
|
3155
3155
|
* @property
|
|
3156
3156
|
* cdef inline object fields(self):
|
|
3157
3157
|
* return <object>PyDataType_FIELDS(self) # <<<<<<<<<<<<<<
|
|
@@ -3164,7 +3164,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3164
3164
|
__pyx_r = ((PyObject *)__pyx_t_1);
|
|
3165
3165
|
goto __pyx_L0;
|
|
3166
3166
|
|
|
3167
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3167
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
|
|
3168
3168
|
* # Use fields/names with care as they may be NULL. You must check
|
|
3169
3169
|
* # for this using PyDataType_HASFIELDS.
|
|
3170
3170
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3179,7 +3179,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3179
3179
|
return __pyx_r;
|
|
3180
3180
|
}
|
|
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3181
|
|
|
3182
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3182
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":256
|
|
3183
3183
|
* return <object>PyDataType_FIELDS(self)
|
|
3184
3184
|
*
|
|
3185
3185
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3193,7 +3193,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3193
3193
|
PyObject *__pyx_t_1;
|
|
3194
3194
|
__Pyx_RefNannySetupContext("names", 0);
|
|
3195
3195
|
|
|
3196
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3196
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":258
|
|
3197
3197
|
* @property
|
|
3198
3198
|
* cdef inline tuple names(self):
|
|
3199
3199
|
* return <tuple>PyDataType_NAMES(self) # <<<<<<<<<<<<<<
|
|
@@ -3206,7 +3206,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3206
3206
|
__pyx_r = ((PyObject*)__pyx_t_1);
|
|
3207
3207
|
goto __pyx_L0;
|
|
3208
3208
|
|
|
3209
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3209
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":256
|
|
3210
3210
|
* return <object>PyDataType_FIELDS(self)
|
|
3211
3211
|
*
|
|
3212
3212
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3221,7 +3221,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3221
3221
|
return __pyx_r;
|
|
3222
3222
|
}
|
|
3223
3223
|
|
|
3224
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3224
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":263
|
|
3225
3225
|
* # valid (the pointer can be NULL). Most users should access
|
|
3226
3226
|
* # this field via the inline helper method PyDataType_SHAPE.
|
|
3227
3227
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3232,7 +3232,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3232
3232
|
static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarray(PyArray_Descr *__pyx_v_self) {
|
|
3233
3233
|
PyArray_ArrayDescr *__pyx_r;
|
|
3234
3234
|
|
|
3235
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3235
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":265
|
|
3236
3236
|
* @property
|
|
3237
3237
|
* cdef inline PyArray_ArrayDescr* subarray(self) noexcept nogil:
|
|
3238
3238
|
* return PyDataType_SUBARRAY(self) # <<<<<<<<<<<<<<
|
|
@@ -3242,7 +3242,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3242
3242
|
__pyx_r = PyDataType_SUBARRAY(__pyx_v_self);
|
|
3243
3243
|
goto __pyx_L0;
|
|
3244
3244
|
|
|
3245
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3245
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":263
|
|
3246
3246
|
* # valid (the pointer can be NULL). Most users should access
|
|
3247
3247
|
* # this field via the inline helper method PyDataType_SHAPE.
|
|
3248
3248
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3255,7 +3255,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3255
3255
|
return __pyx_r;
|
|
3256
3256
|
}
|
|
3257
3257
|
|
|
3258
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3258
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":267
|
|
3259
3259
|
* return PyDataType_SUBARRAY(self)
|
|
3260
3260
|
*
|
|
3261
3261
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3266,7 +3266,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3266
3266
|
static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr *__pyx_v_self) {
|
|
3267
3267
|
npy_uint64 __pyx_r;
|
|
3268
3268
|
|
|
3269
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3269
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":270
|
|
3270
3270
|
* cdef inline npy_uint64 flags(self) noexcept nogil:
|
|
3271
3271
|
* """The data types flags."""
|
|
3272
3272
|
* return PyDataType_FLAGS(self) # <<<<<<<<<<<<<<
|
|
@@ -3276,7 +3276,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3276
3276
|
__pyx_r = PyDataType_FLAGS(__pyx_v_self);
|
|
3277
3277
|
goto __pyx_L0;
|
|
3278
3278
|
|
|
3279
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3279
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":267
|
|
3280
3280
|
* return PyDataType_SUBARRAY(self)
|
|
3281
3281
|
*
|
|
3282
3282
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3289,7 +3289,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3289
3289
|
return __pyx_r;
|
|
3290
3290
|
}
|
|
3291
3291
|
|
|
3292
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3292
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
|
|
3293
3293
|
* ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
|
|
3294
3294
|
*
|
|
3295
3295
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3300,7 +3300,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3300
3300
|
static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3301
3301
|
int __pyx_r;
|
|
3302
3302
|
|
|
3303
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3303
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":282
|
|
3304
3304
|
* cdef inline int numiter(self) noexcept nogil:
|
|
3305
3305
|
* """The number of arrays that need to be broadcast to the same shape."""
|
|
3306
3306
|
* return PyArray_MultiIter_NUMITER(self) # <<<<<<<<<<<<<<
|
|
@@ -3310,7 +3310,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3310
3310
|
__pyx_r = PyArray_MultiIter_NUMITER(__pyx_v_self);
|
|
3311
3311
|
goto __pyx_L0;
|
|
3312
3312
|
|
|
3313
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3313
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
|
|
3314
3314
|
* ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
|
|
3315
3315
|
*
|
|
3316
3316
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3323,7 +3323,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3323
3323
|
return __pyx_r;
|
|
3324
3324
|
}
|
|
3325
3325
|
|
|
3326
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3326
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":284
|
|
3327
3327
|
* return PyArray_MultiIter_NUMITER(self)
|
|
3328
3328
|
*
|
|
3329
3329
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3334,7 +3334,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3334
3334
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3335
3335
|
npy_intp __pyx_r;
|
|
3336
3336
|
|
|
3337
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3337
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":287
|
|
3338
3338
|
* cdef inline npy_intp size(self) noexcept nogil:
|
|
3339
3339
|
* """The total broadcasted size."""
|
|
3340
3340
|
* return PyArray_MultiIter_SIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3344,7 +3344,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3344
3344
|
__pyx_r = PyArray_MultiIter_SIZE(__pyx_v_self);
|
|
3345
3345
|
goto __pyx_L0;
|
|
3346
3346
|
|
|
3347
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3347
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":284
|
|
3348
3348
|
* return PyArray_MultiIter_NUMITER(self)
|
|
3349
3349
|
*
|
|
3350
3350
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3357,7 +3357,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3357
3357
|
return __pyx_r;
|
|
3358
3358
|
}
|
|
3359
3359
|
|
|
3360
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3360
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
|
|
3361
3361
|
* return PyArray_MultiIter_SIZE(self)
|
|
3362
3362
|
*
|
|
3363
3363
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3368,7 +3368,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3368
3368
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3369
3369
|
npy_intp __pyx_r;
|
|
3370
3370
|
|
|
3371
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3371
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":292
|
|
3372
3372
|
* cdef inline npy_intp index(self) noexcept nogil:
|
|
3373
3373
|
* """The current (1-d) index into the broadcasted result."""
|
|
3374
3374
|
* return PyArray_MultiIter_INDEX(self) # <<<<<<<<<<<<<<
|
|
@@ -3378,7 +3378,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3378
3378
|
__pyx_r = PyArray_MultiIter_INDEX(__pyx_v_self);
|
|
3379
3379
|
goto __pyx_L0;
|
|
3380
3380
|
|
|
3381
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3381
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
|
|
3382
3382
|
* return PyArray_MultiIter_SIZE(self)
|
|
3383
3383
|
*
|
|
3384
3384
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3391,7 +3391,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3391
3391
|
return __pyx_r;
|
|
3392
3392
|
}
|
|
3393
3393
|
|
|
3394
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3394
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":294
|
|
3395
3395
|
* return PyArray_MultiIter_INDEX(self)
|
|
3396
3396
|
*
|
|
3397
3397
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3402,7 +3402,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3402
3402
|
static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3403
3403
|
int __pyx_r;
|
|
3404
3404
|
|
|
3405
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3405
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":297
|
|
3406
3406
|
* cdef inline int nd(self) noexcept nogil:
|
|
3407
3407
|
* """The number of dimensions in the broadcasted result."""
|
|
3408
3408
|
* return PyArray_MultiIter_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -3412,7 +3412,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3412
3412
|
__pyx_r = PyArray_MultiIter_NDIM(__pyx_v_self);
|
|
3413
3413
|
goto __pyx_L0;
|
|
3414
3414
|
|
|
3415
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3415
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":294
|
|
3416
3416
|
* return PyArray_MultiIter_INDEX(self)
|
|
3417
3417
|
*
|
|
3418
3418
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3425,7 +3425,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3425
3425
|
return __pyx_r;
|
|
3426
3426
|
}
|
|
3427
3427
|
|
|
3428
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3428
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":299
|
|
3429
3429
|
* return PyArray_MultiIter_NDIM(self)
|
|
3430
3430
|
*
|
|
3431
3431
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3436,7 +3436,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3436
3436
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3437
3437
|
npy_intp *__pyx_r;
|
|
3438
3438
|
|
|
3439
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3439
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":302
|
|
3440
3440
|
* cdef inline npy_intp* dimensions(self) noexcept nogil:
|
|
3441
3441
|
* """The shape of the broadcasted result."""
|
|
3442
3442
|
* return PyArray_MultiIter_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -3446,7 +3446,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3446
3446
|
__pyx_r = PyArray_MultiIter_DIMS(__pyx_v_self);
|
|
3447
3447
|
goto __pyx_L0;
|
|
3448
3448
|
|
|
3449
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3449
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":299
|
|
3450
3450
|
* return PyArray_MultiIter_NDIM(self)
|
|
3451
3451
|
*
|
|
3452
3452
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3459,7 +3459,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3459
3459
|
return __pyx_r;
|
|
3460
3460
|
}
|
|
3461
3461
|
|
|
3462
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3462
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":304
|
|
3463
3463
|
* return PyArray_MultiIter_DIMS(self)
|
|
3464
3464
|
*
|
|
3465
3465
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3470,7 +3470,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3470
3470
|
static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3471
3471
|
void **__pyx_r;
|
|
3472
3472
|
|
|
3473
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3473
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":308
|
|
3474
3474
|
* """An array of iterator objects that holds the iterators for the arrays to be broadcast together.
|
|
3475
3475
|
* On return, the iterators are adjusted for broadcasting."""
|
|
3476
3476
|
* return PyArray_MultiIter_ITERS(self) # <<<<<<<<<<<<<<
|
|
@@ -3480,7 +3480,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3480
3480
|
__pyx_r = PyArray_MultiIter_ITERS(__pyx_v_self);
|
|
3481
3481
|
goto __pyx_L0;
|
|
3482
3482
|
|
|
3483
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3483
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":304
|
|
3484
3484
|
* return PyArray_MultiIter_DIMS(self)
|
|
3485
3485
|
*
|
|
3486
3486
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3493,7 +3493,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3493
3493
|
return __pyx_r;
|
|
3494
3494
|
}
|
|
3495
3495
|
|
|
3496
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3496
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
|
|
3497
3497
|
* # Instead, we use properties that map to the corresponding C-API functions.
|
|
3498
3498
|
*
|
|
3499
3499
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3504,7 +3504,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3504
3504
|
static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject *__pyx_v_self) {
|
|
3505
3505
|
PyObject *__pyx_r;
|
|
3506
3506
|
|
|
3507
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3507
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":326
|
|
3508
3508
|
* """Returns a borrowed reference to the object owning the data/memory.
|
|
3509
3509
|
* """
|
|
3510
3510
|
* return PyArray_BASE(self) # <<<<<<<<<<<<<<
|
|
@@ -3514,7 +3514,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
3514
3514
|
__pyx_r = PyArray_BASE(__pyx_v_self);
|
|
3515
3515
|
goto __pyx_L0;
|
|
3516
3516
|
|
|
3517
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3517
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
|
|
3518
3518
|
* # Instead, we use properties that map to the corresponding C-API functions.
|
|
3519
3519
|
*
|
|
3520
3520
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3527,7 +3527,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
3527
3527
|
return __pyx_r;
|
|
3528
3528
|
}
|
|
3529
3529
|
|
|
3530
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3530
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":328
|
|
3531
3531
|
* return PyArray_BASE(self)
|
|
3532
3532
|
*
|
|
3533
3533
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3541,7 +3541,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3541
3541
|
PyArray_Descr *__pyx_t_1;
|
|
3542
3542
|
__Pyx_RefNannySetupContext("descr", 0);
|
|
3543
3543
|
|
|
3544
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3544
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":332
|
|
3545
3545
|
* """Returns an owned reference to the dtype of the array.
|
|
3546
3546
|
* """
|
|
3547
3547
|
* return <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
|
|
@@ -3554,7 +3554,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3554
3554
|
__pyx_r = ((PyArray_Descr *)__pyx_t_1);
|
|
3555
3555
|
goto __pyx_L0;
|
|
3556
3556
|
|
|
3557
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3557
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":328
|
|
3558
3558
|
* return PyArray_BASE(self)
|
|
3559
3559
|
*
|
|
3560
3560
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3569,7 +3569,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3569
3569
|
return __pyx_r;
|
|
3570
3570
|
}
|
|
3571
3571
|
|
|
3572
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3572
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":334
|
|
3573
3573
|
* return <dtype>PyArray_DESCR(self)
|
|
3574
3574
|
*
|
|
3575
3575
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3580,7 +3580,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3580
3580
|
static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx_v_self) {
|
|
3581
3581
|
int __pyx_r;
|
|
3582
3582
|
|
|
3583
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3583
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":338
|
|
3584
3584
|
* """Returns the number of dimensions in the array.
|
|
3585
3585
|
* """
|
|
3586
3586
|
* return PyArray_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -3590,7 +3590,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3590
3590
|
__pyx_r = PyArray_NDIM(__pyx_v_self);
|
|
3591
3591
|
goto __pyx_L0;
|
|
3592
3592
|
|
|
3593
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3593
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":334
|
|
3594
3594
|
* return <dtype>PyArray_DESCR(self)
|
|
3595
3595
|
*
|
|
3596
3596
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3603,7 +3603,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3603
3603
|
return __pyx_r;
|
|
3604
3604
|
}
|
|
3605
3605
|
|
|
3606
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3606
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":340
|
|
3607
3607
|
* return PyArray_NDIM(self)
|
|
3608
3608
|
*
|
|
3609
3609
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3614,7 +3614,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3614
3614
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObject *__pyx_v_self) {
|
|
3615
3615
|
npy_intp *__pyx_r;
|
|
3616
3616
|
|
|
3617
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3617
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":346
|
|
3618
3618
|
* Can return NULL for 0-dimensional arrays.
|
|
3619
3619
|
* """
|
|
3620
3620
|
* return PyArray_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -3624,7 +3624,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
3624
3624
|
__pyx_r = PyArray_DIMS(__pyx_v_self);
|
|
3625
3625
|
goto __pyx_L0;
|
|
3626
3626
|
|
|
3627
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":340
|
|
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|
* return PyArray_NDIM(self)
|
|
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|
*
|
|
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3630
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3637,7 +3637,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
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|
return __pyx_r;
|
|
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|
}
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":348
|
|
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|
* return PyArray_DIMS(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3648,7 +3648,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
3648
3648
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayObject *__pyx_v_self) {
|
|
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|
npy_intp *__pyx_r;
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":353
|
|
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|
* The number of elements matches the number of dimensions of the array (ndim).
|
|
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|
* """
|
|
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3654
|
* return PyArray_STRIDES(self) # <<<<<<<<<<<<<<
|
|
@@ -3658,7 +3658,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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3658
|
__pyx_r = PyArray_STRIDES(__pyx_v_self);
|
|
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|
goto __pyx_L0;
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":348
|
|
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|
* return PyArray_DIMS(self)
|
|
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|
*
|
|
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3664
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3671,7 +3671,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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|
return __pyx_r;
|
|
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|
}
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":355
|
|
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|
* return PyArray_STRIDES(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3682,7 +3682,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *__pyx_v_self) {
|
|
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|
npy_intp __pyx_r;
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":359
|
|
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|
* """Returns the total size (in number of elements) of the array.
|
|
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|
* """
|
|
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|
* return PyArray_SIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3692,7 +3692,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
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3692
|
__pyx_r = PyArray_SIZE(__pyx_v_self);
|
|
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|
goto __pyx_L0;
|
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|
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":355
|
|
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|
* return PyArray_STRIDES(self)
|
|
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3697
|
*
|
|
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3698
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3705,7 +3705,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
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3705
|
return __pyx_r;
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":361
|
|
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|
* return PyArray_SIZE(self)
|
|
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3710
|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3716,7 +3716,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
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3716
|
static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__pyx_v_self) {
|
|
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|
char *__pyx_r;
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":368
|
|
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|
* of `PyArray_DATA()` instead, which returns a 'void*'.
|
|
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3721
|
* """
|
|
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3722
|
* return PyArray_BYTES(self) # <<<<<<<<<<<<<<
|
|
@@ -3726,7 +3726,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
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3726
|
__pyx_r = PyArray_BYTES(__pyx_v_self);
|
|
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|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":361
|
|
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3730
|
* return PyArray_SIZE(self)
|
|
3731
3731
|
*
|
|
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3732
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3739,7 +3739,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
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3739
|
return __pyx_r;
|
|
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|
}
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":776
|
|
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|
* ctypedef long double complex clongdouble_t
|
|
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|
*
|
|
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3745
|
* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
|
|
@@ -3756,7 +3756,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
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|
int __pyx_clineno = 0;
|
|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":777
|
|
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|
*
|
|
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3761
|
* cdef inline object PyArray_MultiIterNew1(a):
|
|
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3762
|
* return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<<
|
|
@@ -3770,7 +3770,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
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|
__pyx_t_1 = 0;
|
|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
|
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|
* ctypedef long double complex clongdouble_t
|
|
3775
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|
*
|
|
3776
3776
|
* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
|
|
@@ -3789,7 +3789,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
3789
3789
|
return __pyx_r;
|
|
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|
}
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":779
|
|
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|
* return PyArray_MultiIterNew(1, <void*>a)
|
|
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3794
|
*
|
|
3795
3795
|
* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
|
@@ -3806,7 +3806,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
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|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0);
|
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":780
|
|
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|
*
|
|
3811
3811
|
* cdef inline object PyArray_MultiIterNew2(a, b):
|
|
3812
3812
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<<
|
|
@@ -3820,7 +3820,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3820
3820
|
__pyx_t_1 = 0;
|
|
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|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":779
|
|
3824
3824
|
* return PyArray_MultiIterNew(1, <void*>a)
|
|
3825
3825
|
*
|
|
3826
3826
|
* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
|
@@ -3839,7 +3839,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3839
3839
|
return __pyx_r;
|
|
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|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":782
|
|
3843
3843
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
|
3844
3844
|
*
|
|
3845
3845
|
* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
|
@@ -3856,7 +3856,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
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3856
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":783
|
|
3860
3860
|
*
|
|
3861
3861
|
* cdef inline object PyArray_MultiIterNew3(a, b, c):
|
|
3862
3862
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<<
|
|
@@ -3870,7 +3870,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
3870
3870
|
__pyx_t_1 = 0;
|
|
3871
3871
|
goto __pyx_L0;
|
|
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3872
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":782
|
|
3874
3874
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
|
3875
3875
|
*
|
|
3876
3876
|
* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
|
@@ -3889,7 +3889,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
3889
3889
|
return __pyx_r;
|
|
3890
3890
|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":785
|
|
3893
3893
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
|
3894
3894
|
*
|
|
3895
3895
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -3906,7 +3906,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3906
3906
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":786
|
|
3910
3910
|
*
|
|
3911
3911
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d):
|
|
3912
3912
|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<<
|
|
@@ -3920,7 +3920,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3920
3920
|
__pyx_t_1 = 0;
|
|
3921
3921
|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":785
|
|
3924
3924
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
|
3925
3925
|
*
|
|
3926
3926
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -3939,7 +3939,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3939
3939
|
return __pyx_r;
|
|
3940
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|
}
|
|
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3941
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":788
|
|
3943
3943
|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
|
3944
3944
|
*
|
|
3945
3945
|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -3956,7 +3956,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
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3956
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 0);
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":789
|
|
3960
3960
|
*
|
|
3961
3961
|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
|
|
3962
3962
|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<<
|
|
@@ -3970,7 +3970,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
3970
3970
|
__pyx_t_1 = 0;
|
|
3971
3971
|
goto __pyx_L0;
|
|
3972
3972
|
|
|
3973
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":788
|
|
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|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
|
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|
*
|
|
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3976
|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -3989,7 +3989,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
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|
return __pyx_r;
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":791
|
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
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|
*
|
|
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3995
|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -4004,7 +4004,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
PyObject *__pyx_t_2;
|
|
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|
__Pyx_RefNannySetupContext("PyDataType_SHAPE", 0);
|
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|
|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
|
|
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -4014,7 +4014,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
4014
4014
|
__pyx_t_1 = PyDataType_HASSUBARRAY(__pyx_v_d);
|
|
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|
if (__pyx_t_1) {
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":793
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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|
* if PyDataType_HASSUBARRAY(d):
|
|
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|
* return <tuple>d.subarray.shape # <<<<<<<<<<<<<<
|
|
@@ -4027,7 +4027,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
__pyx_r = ((PyObject*)__pyx_t_2);
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
|
|
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*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -4036,7 +4036,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
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|
*/
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":795
|
|
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|
* return <tuple>d.subarray.shape
|
|
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|
* else:
|
|
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|
* return () # <<<<<<<<<<<<<<
|
|
@@ -4050,7 +4050,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
goto __pyx_L0;
|
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}
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":791
|
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
4055
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -4065,7 +4065,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
return __pyx_r;
|
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|
}
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":994
|
|
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|
* int _import_umath() except -1
|
|
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|
*
|
|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
|
|
@@ -4079,7 +4079,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
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|
const char *__pyx_filename = NULL;
|
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int __pyx_clineno = 0;
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
|
|
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|
*
|
|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *:
|
|
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|
* Py_INCREF(base) # important to do this before stealing the reference below! # <<<<<<<<<<<<<<
|
|
@@ -4088,7 +4088,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
4088
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|
*/
|
|
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|
Py_INCREF(__pyx_v_base);
|
|
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|
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|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
|
|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *:
|
|
4093
4093
|
* Py_INCREF(base) # important to do this before stealing the reference below!
|
|
4094
4094
|
* PyArray_SetBaseObject(arr, base) # <<<<<<<<<<<<<<
|
|
@@ -4097,7 +4097,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
4097
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|
*/
|
|
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|
__pyx_t_1 = PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(1, 996, __pyx_L1_error)
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":994
|
|
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|
* int _import_umath() except -1
|
|
4102
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|
*
|
|
4103
4103
|
* cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
|
|
@@ -4112,7 +4112,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":998
|
|
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|
* PyArray_SetBaseObject(arr, base)
|
|
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|
*
|
|
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|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -4127,7 +4127,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
int __pyx_t_1;
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":999
|
|
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|
*
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
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|
* base = PyArray_BASE(arr) # <<<<<<<<<<<<<<
|
|
@@ -4136,7 +4136,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4136
4136
|
*/
|
|
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|
__pyx_v_base = PyArray_BASE(__pyx_v_arr);
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1000
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
4141
4141
|
* base = PyArray_BASE(arr)
|
|
4142
4142
|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -4146,7 +4146,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
__pyx_t_1 = (__pyx_v_base == NULL);
|
|
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|
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|
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1001
|
|
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|
* base = PyArray_BASE(arr)
|
|
4151
4151
|
* if base is NULL:
|
|
4152
4152
|
* return None # <<<<<<<<<<<<<<
|
|
@@ -4157,7 +4157,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4157
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|
__pyx_r = Py_None; __Pyx_INCREF(Py_None);
|
|
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|
goto __pyx_L0;
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1000
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
4162
4162
|
* base = PyArray_BASE(arr)
|
|
4163
4163
|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -4166,7 +4166,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4166
4166
|
*/
|
|
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|
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|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1002
|
|
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4170
|
* if base is NULL:
|
|
4171
4171
|
* return None
|
|
4172
4172
|
* return <object>base # <<<<<<<<<<<<<<
|
|
@@ -4178,7 +4178,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4178
4178
|
__pyx_r = ((PyObject *)__pyx_v_base);
|
|
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|
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|
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|
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":998
|
|
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|
* PyArray_SetBaseObject(arr, base)
|
|
4183
4183
|
*
|
|
4184
4184
|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -4193,7 +4193,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4193
4193
|
return __pyx_r;
|
|
4194
4194
|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1006
|
|
4197
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|
* # Versions of the import_* functions which are more suitable for
|
|
4198
4198
|
* # Cython code.
|
|
4199
4199
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4220,7 +4220,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4220
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|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("import_array", 0);
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1007
|
|
4224
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|
* # Cython code.
|
|
4225
4225
|
* cdef inline int import_array() except -1:
|
|
4226
4226
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4236,7 +4236,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4236
4236
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4237
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|
/*try:*/ {
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1008
|
|
4240
4240
|
* cdef inline int import_array() except -1:
|
|
4241
4241
|
* try:
|
|
4242
4242
|
* __pyx_import_array() # <<<<<<<<<<<<<<
|
|
@@ -4245,7 +4245,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4245
4245
|
*/
|
|
4246
4246
|
__pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1008, __pyx_L3_error)
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1007
|
|
4249
4249
|
* # Cython code.
|
|
4250
4250
|
* cdef inline int import_array() except -1:
|
|
4251
4251
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4259,7 +4259,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4259
4259
|
goto __pyx_L8_try_end;
|
|
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4260
|
__pyx_L3_error:;
|
|
4261
4261
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4262
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1009
|
|
4263
4263
|
* try:
|
|
4264
4264
|
* __pyx_import_array()
|
|
4265
4265
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4274,7 +4274,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4274
4274
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4275
4275
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
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4276
|
|
|
4277
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4277
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1010
|
|
4278
4278
|
* __pyx_import_array()
|
|
4279
4279
|
* except Exception:
|
|
4280
4280
|
* raise ImportError("numpy._core.multiarray failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4299,7 +4299,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4299
4299
|
}
|
|
4300
4300
|
goto __pyx_L5_except_error;
|
|
4301
4301
|
|
|
4302
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4302
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1007
|
|
4303
4303
|
* # Cython code.
|
|
4304
4304
|
* cdef inline int import_array() except -1:
|
|
4305
4305
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4315,7 +4315,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4315
4315
|
__pyx_L8_try_end:;
|
|
4316
4316
|
}
|
|
4317
4317
|
|
|
4318
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4318
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1006
|
|
4319
4319
|
* # Versions of the import_* functions which are more suitable for
|
|
4320
4320
|
* # Cython code.
|
|
4321
4321
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4340,7 +4340,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4340
4340
|
return __pyx_r;
|
|
4341
4341
|
}
|
|
4342
4342
|
|
|
4343
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4343
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1012
|
|
4344
4344
|
* raise ImportError("numpy._core.multiarray failed to import")
|
|
4345
4345
|
*
|
|
4346
4346
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4367,7 +4367,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4367
4367
|
int __pyx_clineno = 0;
|
|
4368
4368
|
__Pyx_RefNannySetupContext("import_umath", 0);
|
|
4369
4369
|
|
|
4370
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4370
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
|
|
4371
4371
|
*
|
|
4372
4372
|
* cdef inline int import_umath() except -1:
|
|
4373
4373
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4383,7 +4383,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4383
4383
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4384
4384
|
/*try:*/ {
|
|
4385
4385
|
|
|
4386
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4386
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1014
|
|
4387
4387
|
* cdef inline int import_umath() except -1:
|
|
4388
4388
|
* try:
|
|
4389
4389
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -4392,7 +4392,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4392
4392
|
*/
|
|
4393
4393
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1014, __pyx_L3_error)
|
|
4394
4394
|
|
|
4395
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4395
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
|
|
4396
4396
|
*
|
|
4397
4397
|
* cdef inline int import_umath() except -1:
|
|
4398
4398
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4406,7 +4406,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4406
4406
|
goto __pyx_L8_try_end;
|
|
4407
4407
|
__pyx_L3_error:;
|
|
4408
4408
|
|
|
4409
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4409
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1015
|
|
4410
4410
|
* try:
|
|
4411
4411
|
* _import_umath()
|
|
4412
4412
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4421,7 +4421,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4421
4421
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4422
4422
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4423
4423
|
|
|
4424
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4424
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1016
|
|
4425
4425
|
* _import_umath()
|
|
4426
4426
|
* except Exception:
|
|
4427
4427
|
* raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4446,7 +4446,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4446
4446
|
}
|
|
4447
4447
|
goto __pyx_L5_except_error;
|
|
4448
4448
|
|
|
4449
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4449
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
|
|
4450
4450
|
*
|
|
4451
4451
|
* cdef inline int import_umath() except -1:
|
|
4452
4452
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4462,7 +4462,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4462
4462
|
__pyx_L8_try_end:;
|
|
4463
4463
|
}
|
|
4464
4464
|
|
|
4465
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4465
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1012
|
|
4466
4466
|
* raise ImportError("numpy._core.multiarray failed to import")
|
|
4467
4467
|
*
|
|
4468
4468
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4487,7 +4487,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4487
4487
|
return __pyx_r;
|
|
4488
4488
|
}
|
|
4489
4489
|
|
|
4490
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4490
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1018
|
|
4491
4491
|
* raise ImportError("numpy._core.umath failed to import")
|
|
4492
4492
|
*
|
|
4493
4493
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4514,7 +4514,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4514
4514
|
int __pyx_clineno = 0;
|
|
4515
4515
|
__Pyx_RefNannySetupContext("import_ufunc", 0);
|
|
4516
4516
|
|
|
4517
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4517
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1019
|
|
4518
4518
|
*
|
|
4519
4519
|
* cdef inline int import_ufunc() except -1:
|
|
4520
4520
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4530,7 +4530,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4530
4530
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4531
4531
|
/*try:*/ {
|
|
4532
4532
|
|
|
4533
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4533
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1020
|
|
4534
4534
|
* cdef inline int import_ufunc() except -1:
|
|
4535
4535
|
* try:
|
|
4536
4536
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -4539,7 +4539,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4539
4539
|
*/
|
|
4540
4540
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1020, __pyx_L3_error)
|
|
4541
4541
|
|
|
4542
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4542
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1019
|
|
4543
4543
|
*
|
|
4544
4544
|
* cdef inline int import_ufunc() except -1:
|
|
4545
4545
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4553,7 +4553,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4553
4553
|
goto __pyx_L8_try_end;
|
|
4554
4554
|
__pyx_L3_error:;
|
|
4555
4555
|
|
|
4556
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4556
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1021
|
|
4557
4557
|
* try:
|
|
4558
4558
|
* _import_umath()
|
|
4559
4559
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4568,7 +4568,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4568
4568
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4569
4569
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4570
4570
|
|
|
4571
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4571
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1022
|
|
4572
4572
|
* _import_umath()
|
|
4573
4573
|
* except Exception:
|
|
4574
4574
|
* raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4593,7 +4593,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4593
4593
|
}
|
|
4594
4594
|
goto __pyx_L5_except_error;
|
|
4595
4595
|
|
|
4596
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4596
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1019
|
|
4597
4597
|
*
|
|
4598
4598
|
* cdef inline int import_ufunc() except -1:
|
|
4599
4599
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4609,7 +4609,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4609
4609
|
__pyx_L8_try_end:;
|
|
4610
4610
|
}
|
|
4611
4611
|
|
|
4612
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4612
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1018
|
|
4613
4613
|
* raise ImportError("numpy._core.umath failed to import")
|
|
4614
4614
|
*
|
|
4615
4615
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4634,7 +4634,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4634
4634
|
return __pyx_r;
|
|
4635
4635
|
}
|
|
4636
4636
|
|
|
4637
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4637
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1025
|
|
4638
4638
|
*
|
|
4639
4639
|
*
|
|
4640
4640
|
* cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4645,7 +4645,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4645
4645
|
static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
|
|
4646
4646
|
int __pyx_r;
|
|
4647
4647
|
|
|
4648
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4648
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1037
|
|
4649
4649
|
* bool
|
|
4650
4650
|
* """
|
|
4651
4651
|
* return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -4655,7 +4655,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4655
4655
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
|
|
4656
4656
|
goto __pyx_L0;
|
|
4657
4657
|
|
|
4658
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4658
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1025
|
|
4659
4659
|
*
|
|
4660
4660
|
*
|
|
4661
4661
|
* cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4668,7 +4668,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4668
4668
|
return __pyx_r;
|
|
4669
4669
|
}
|
|
4670
4670
|
|
|
4671
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4671
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1040
|
|
4672
4672
|
*
|
|
4673
4673
|
*
|
|
4674
4674
|
* cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4679,7 +4679,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4679
4679
|
static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
|
|
4680
4680
|
int __pyx_r;
|
|
4681
4681
|
|
|
4682
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4682
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1052
|
|
4683
4683
|
* bool
|
|
4684
4684
|
* """
|
|
4685
4685
|
* return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -4689,7 +4689,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4689
4689
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
|
|
4690
4690
|
goto __pyx_L0;
|
|
4691
4691
|
|
|
4692
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4692
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1040
|
|
4693
4693
|
*
|
|
4694
4694
|
*
|
|
4695
4695
|
* cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4702,7 +4702,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4702
4702
|
return __pyx_r;
|
|
4703
4703
|
}
|
|
4704
4704
|
|
|
4705
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4705
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1055
|
|
4706
4706
|
*
|
|
4707
4707
|
*
|
|
4708
4708
|
* cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4713,7 +4713,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4713
4713
|
static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
|
|
4714
4714
|
npy_datetime __pyx_r;
|
|
4715
4715
|
|
|
4716
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4716
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1062
|
|
4717
4717
|
* also needed. That can be found using `get_datetime64_unit`.
|
|
4718
4718
|
* """
|
|
4719
4719
|
* return (<PyDatetimeScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -4723,7 +4723,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4723
4723
|
__pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
|
|
4724
4724
|
goto __pyx_L0;
|
|
4725
4725
|
|
|
4726
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4726
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1055
|
|
4727
4727
|
*
|
|
4728
4728
|
*
|
|
4729
4729
|
* cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4736,7 +4736,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4736
4736
|
return __pyx_r;
|
|
4737
4737
|
}
|
|
4738
4738
|
|
|
4739
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4739
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1065
|
|
4740
4740
|
*
|
|
4741
4741
|
*
|
|
4742
4742
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4747,7 +4747,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4747
4747
|
static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
|
|
4748
4748
|
npy_timedelta __pyx_r;
|
|
4749
4749
|
|
|
4750
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4750
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1069
|
|
4751
4751
|
* returns the int64 value underlying scalar numpy timedelta64 object
|
|
4752
4752
|
* """
|
|
4753
4753
|
* return (<PyTimedeltaScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -4757,7 +4757,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4757
4757
|
__pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
|
|
4758
4758
|
goto __pyx_L0;
|
|
4759
4759
|
|
|
4760
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4760
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1065
|
|
4761
4761
|
*
|
|
4762
4762
|
*
|
|
4763
4763
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4770,7 +4770,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4770
4770
|
return __pyx_r;
|
|
4771
4771
|
}
|
|
4772
4772
|
|
|
4773
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4773
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1072
|
|
4774
4774
|
*
|
|
4775
4775
|
*
|
|
4776
4776
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4781,7 +4781,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4781
4781
|
static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
|
|
4782
4782
|
NPY_DATETIMEUNIT __pyx_r;
|
|
4783
4783
|
|
|
4784
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4784
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1076
|
|
4785
4785
|
* returns the unit part of the dtype for a numpy datetime64 object.
|
|
4786
4786
|
* """
|
|
4787
4787
|
* return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base # <<<<<<<<<<<<<<
|
|
@@ -4791,7 +4791,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
4791
4791
|
__pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
|
|
4792
4792
|
goto __pyx_L0;
|
|
4793
4793
|
|
|
4794
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4794
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-quwyv4g5/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1072
|
|
4795
4795
|
*
|
|
4796
4796
|
*
|
|
4797
4797
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4804,7 +4804,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
4804
4804
|
return __pyx_r;
|
|
4805
4805
|
}
|
|
4806
4806
|
|
|
4807
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4807
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":8
|
|
4808
4808
|
* from libc.string cimport strcmp
|
|
4809
4809
|
*
|
|
4810
4810
|
* cdef str sconc_np(cnp.ndarray[int32_t, ndim=1] seqdata, str sep): # <<<<<<<<<<<<<<
|
|
@@ -4840,11 +4840,11 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4840
4840
|
__pyx_pybuffernd_seqdata.rcbuffer = &__pyx_pybuffer_seqdata;
|
|
4841
4841
|
{
|
|
4842
4842
|
__Pyx_BufFmt_StackElem __pyx_stack[1];
|
|
4843
|
-
if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_seqdata.rcbuffer->pybuffer, (PyObject*)__pyx_v_seqdata, &__Pyx_TypeInfo_nn_int32_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0,
|
|
4843
|
+
if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_seqdata.rcbuffer->pybuffer, (PyObject*)__pyx_v_seqdata, &__Pyx_TypeInfo_nn_int32_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) __PYX_ERR(0, 8, __pyx_L1_error)
|
|
4844
4844
|
}
|
|
4845
4845
|
__pyx_pybuffernd_seqdata.diminfo[0].strides = __pyx_pybuffernd_seqdata.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_seqdata.diminfo[0].shape = __pyx_pybuffernd_seqdata.rcbuffer->pybuffer.shape[0];
|
|
4846
4846
|
|
|
4847
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4847
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":9
|
|
4848
4848
|
*
|
|
4849
4849
|
* cdef str sconc_np(cnp.ndarray[int32_t, ndim=1] seqdata, str sep):
|
|
4850
4850
|
* cdef int i, size = seqdata.shape[0] # <<<<<<<<<<<<<<
|
|
@@ -4853,19 +4853,19 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4853
4853
|
*/
|
|
4854
4854
|
__pyx_v_size = (__pyx_f_5numpy_7ndarray_5shape_shape(((PyArrayObject *)__pyx_v_seqdata))[0]);
|
|
4855
4855
|
|
|
4856
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4856
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":10
|
|
4857
4857
|
* cdef str sconc_np(cnp.ndarray[int32_t, ndim=1] seqdata, str sep):
|
|
4858
4858
|
* cdef int i, size = seqdata.shape[0]
|
|
4859
4859
|
* cdef list valid_values = [] # <<<<<<<<<<<<<<
|
|
4860
4860
|
* cdef bytes result = b""
|
|
4861
4861
|
*
|
|
4862
4862
|
*/
|
|
4863
|
-
__pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4863
|
+
__pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 10, __pyx_L1_error)
|
|
4864
4864
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4865
4865
|
__pyx_v_valid_values = ((PyObject*)__pyx_t_1);
|
|
4866
4866
|
__pyx_t_1 = 0;
|
|
4867
4867
|
|
|
4868
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4868
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":11
|
|
4869
4869
|
* cdef int i, size = seqdata.shape[0]
|
|
4870
4870
|
* cdef list valid_values = []
|
|
4871
4871
|
* cdef bytes result = b"" # <<<<<<<<<<<<<<
|
|
@@ -4875,7 +4875,7 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4875
4875
|
__Pyx_INCREF(__pyx_mstate_global->__pyx_kp_b_);
|
|
4876
4876
|
__pyx_v_result = __pyx_mstate_global->__pyx_kp_b_;
|
|
4877
4877
|
|
|
4878
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4878
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":13
|
|
4879
4879
|
* cdef bytes result = b""
|
|
4880
4880
|
*
|
|
4881
4881
|
* for i in range(size): # <<<<<<<<<<<<<<
|
|
@@ -4887,7 +4887,7 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4887
4887
|
for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
|
|
4888
4888
|
__pyx_v_i = __pyx_t_4;
|
|
4889
4889
|
|
|
4890
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4890
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":14
|
|
4891
4891
|
*
|
|
4892
4892
|
* for i in range(size):
|
|
4893
4893
|
* if seqdata[i] >= 0: # <<<<<<<<<<<<<<
|
|
@@ -4902,12 +4902,12 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4902
4902
|
} else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_seqdata.diminfo[0].shape)) __pyx_t_6 = 0;
|
|
4903
4903
|
if (unlikely(__pyx_t_6 != -1)) {
|
|
4904
4904
|
__Pyx_RaiseBufferIndexError(__pyx_t_6);
|
|
4905
|
-
__PYX_ERR(0,
|
|
4905
|
+
__PYX_ERR(0, 14, __pyx_L1_error)
|
|
4906
4906
|
}
|
|
4907
4907
|
__pyx_t_7 = ((*__Pyx_BufPtrStrided1d(int32_t *, __pyx_pybuffernd_seqdata.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_seqdata.diminfo[0].strides)) >= 0);
|
|
4908
4908
|
if (__pyx_t_7) {
|
|
4909
4909
|
|
|
4910
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4910
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":15
|
|
4911
4911
|
* for i in range(size):
|
|
4912
4912
|
* if seqdata[i] >= 0:
|
|
4913
4913
|
* valid_values.append(str(seqdata[i])) # <<<<<<<<<<<<<<
|
|
@@ -4922,17 +4922,17 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4922
4922
|
} else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_seqdata.diminfo[0].shape)) __pyx_t_6 = 0;
|
|
4923
4923
|
if (unlikely(__pyx_t_6 != -1)) {
|
|
4924
4924
|
__Pyx_RaiseBufferIndexError(__pyx_t_6);
|
|
4925
|
-
__PYX_ERR(0,
|
|
4925
|
+
__PYX_ERR(0, 15, __pyx_L1_error)
|
|
4926
4926
|
}
|
|
4927
|
-
__pyx_t_1 = __Pyx_PyLong_From_int32_t((*__Pyx_BufPtrStrided1d(int32_t *, __pyx_pybuffernd_seqdata.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_seqdata.diminfo[0].strides))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4927
|
+
__pyx_t_1 = __Pyx_PyLong_From_int32_t((*__Pyx_BufPtrStrided1d(int32_t *, __pyx_pybuffernd_seqdata.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_seqdata.diminfo[0].strides))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
|
|
4928
4928
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4929
|
-
__pyx_t_8 = __Pyx_PyObject_Unicode(__pyx_t_1); if (unlikely(!__pyx_t_8)) __PYX_ERR(0,
|
|
4929
|
+
__pyx_t_8 = __Pyx_PyObject_Unicode(__pyx_t_1); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 15, __pyx_L1_error)
|
|
4930
4930
|
__Pyx_GOTREF(__pyx_t_8);
|
|
4931
4931
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
4932
|
-
__pyx_t_9 = __Pyx_PyList_Append(__pyx_v_valid_values, __pyx_t_8); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0,
|
|
4932
|
+
__pyx_t_9 = __Pyx_PyList_Append(__pyx_v_valid_values, __pyx_t_8); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 15, __pyx_L1_error)
|
|
4933
4933
|
__Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
|
|
4934
4934
|
|
|
4935
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4935
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":14
|
|
4936
4936
|
*
|
|
4937
4937
|
* for i in range(size):
|
|
4938
4938
|
* if seqdata[i] >= 0: # <<<<<<<<<<<<<<
|
|
@@ -4942,7 +4942,7 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4942
4942
|
}
|
|
4943
4943
|
}
|
|
4944
4944
|
|
|
4945
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4945
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":17
|
|
4946
4946
|
* valid_values.append(str(seqdata[i]))
|
|
4947
4947
|
*
|
|
4948
4948
|
* if valid_values: # <<<<<<<<<<<<<<
|
|
@@ -4951,13 +4951,13 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4951
4951
|
*/
|
|
4952
4952
|
{
|
|
4953
4953
|
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_v_valid_values);
|
|
4954
|
-
if (unlikely(((!CYTHON_ASSUME_SAFE_SIZE) && __pyx_temp < 0))) __PYX_ERR(0,
|
|
4954
|
+
if (unlikely(((!CYTHON_ASSUME_SAFE_SIZE) && __pyx_temp < 0))) __PYX_ERR(0, 17, __pyx_L1_error)
|
|
4955
4955
|
__pyx_t_7 = (__pyx_temp != 0);
|
|
4956
4956
|
}
|
|
4957
4957
|
|
|
4958
4958
|
if (__pyx_t_7) {
|
|
4959
4959
|
|
|
4960
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4960
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":18
|
|
4961
4961
|
*
|
|
4962
4962
|
* if valid_values:
|
|
4963
4963
|
* result = sep.join(valid_values).encode('utf-8') # <<<<<<<<<<<<<<
|
|
@@ -4966,17 +4966,17 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4966
4966
|
*/
|
|
4967
4967
|
if (unlikely(__pyx_v_sep == Py_None)) {
|
|
4968
4968
|
PyErr_Format(PyExc_AttributeError, "'NoneType' object has no attribute '%.30s'", "join");
|
|
4969
|
-
__PYX_ERR(0,
|
|
4969
|
+
__PYX_ERR(0, 18, __pyx_L1_error)
|
|
4970
4970
|
}
|
|
4971
|
-
__pyx_t_8 = PyUnicode_Join(__pyx_v_sep, __pyx_v_valid_values); if (unlikely(!__pyx_t_8)) __PYX_ERR(0,
|
|
4971
|
+
__pyx_t_8 = PyUnicode_Join(__pyx_v_sep, __pyx_v_valid_values); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 18, __pyx_L1_error)
|
|
4972
4972
|
__Pyx_GOTREF(__pyx_t_8);
|
|
4973
|
-
__pyx_t_1 = PyUnicode_AsUTF8String(((PyObject*)__pyx_t_8)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4973
|
+
__pyx_t_1 = PyUnicode_AsUTF8String(((PyObject*)__pyx_t_8)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 18, __pyx_L1_error)
|
|
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4974
|
__Pyx_GOTREF(__pyx_t_1);
|
|
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4975
|
__Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
|
|
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4976
|
__Pyx_DECREF_SET(__pyx_v_result, ((PyObject*)__pyx_t_1));
|
|
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4977
|
__pyx_t_1 = 0;
|
|
4978
4978
|
|
|
4979
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4979
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":17
|
|
4980
4980
|
* valid_values.append(str(seqdata[i]))
|
|
4981
4981
|
*
|
|
4982
4982
|
* if valid_values: # <<<<<<<<<<<<<<
|
|
@@ -4985,7 +4985,7 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4985
4985
|
*/
|
|
4986
4986
|
}
|
|
4987
4987
|
|
|
4988
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
4988
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":20
|
|
4989
4989
|
* result = sep.join(valid_values).encode('utf-8')
|
|
4990
4990
|
*
|
|
4991
4991
|
* return result.decode('utf-8') # <<<<<<<<<<<<<<
|
|
@@ -4993,13 +4993,13 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
4993
4993
|
* def seqconc(cnp.ndarray[int32_t, ndim=2] data, str sep="-"):
|
|
4994
4994
|
*/
|
|
4995
4995
|
__Pyx_XDECREF(__pyx_r);
|
|
4996
|
-
__pyx_t_1 = __Pyx_decode_bytes(__pyx_v_result, 0, PY_SSIZE_T_MAX, NULL, NULL, PyUnicode_DecodeUTF8); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4996
|
+
__pyx_t_1 = __Pyx_decode_bytes(__pyx_v_result, 0, PY_SSIZE_T_MAX, NULL, NULL, PyUnicode_DecodeUTF8); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 20, __pyx_L1_error)
|
|
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4997
|
__Pyx_GOTREF(__pyx_t_1);
|
|
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4998
|
__pyx_r = ((PyObject*)__pyx_t_1);
|
|
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4999
|
__pyx_t_1 = 0;
|
|
5000
5000
|
goto __pyx_L0;
|
|
5001
5001
|
|
|
5002
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5002
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":8
|
|
5003
5003
|
* from libc.string cimport strcmp
|
|
5004
5004
|
*
|
|
5005
5005
|
* cdef str sconc_np(cnp.ndarray[int32_t, ndim=1] seqdata, str sep): # <<<<<<<<<<<<<<
|
|
@@ -5030,7 +5030,7 @@ static PyObject *__pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_scon
|
|
|
5030
5030
|
return __pyx_r;
|
|
5031
5031
|
}
|
|
5032
5032
|
|
|
5033
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5033
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":22
|
|
5034
5034
|
* return result.decode('utf-8')
|
|
5035
5035
|
*
|
|
5036
5036
|
* def seqconc(cnp.ndarray[int32_t, ndim=2] data, str sep="-"): # <<<<<<<<<<<<<<
|
|
@@ -5078,35 +5078,35 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
5078
5078
|
{
|
|
5079
5079
|
PyObject ** const __pyx_pyargnames[] = {&__pyx_mstate_global->__pyx_n_u_data,&__pyx_mstate_global->__pyx_n_u_sep,0};
|
|
5080
5080
|
const Py_ssize_t __pyx_kwds_len = (__pyx_kwds) ? __Pyx_NumKwargs_FASTCALL(__pyx_kwds) : 0;
|
|
5081
|
-
if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0,
|
|
5081
|
+
if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0, 22, __pyx_L3_error)
|
|
5082
5082
|
if (__pyx_kwds_len > 0) {
|
|
5083
5083
|
switch (__pyx_nargs) {
|
|
5084
5084
|
case 2:
|
|
5085
5085
|
values[1] = __Pyx_ArgRef_FASTCALL(__pyx_args, 1);
|
|
5086
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[1])) __PYX_ERR(0,
|
|
5086
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[1])) __PYX_ERR(0, 22, __pyx_L3_error)
|
|
5087
5087
|
CYTHON_FALLTHROUGH;
|
|
5088
5088
|
case 1:
|
|
5089
5089
|
values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
|
|
5090
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0,
|
|
5090
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 22, __pyx_L3_error)
|
|
5091
5091
|
CYTHON_FALLTHROUGH;
|
|
5092
5092
|
case 0: break;
|
|
5093
5093
|
default: goto __pyx_L5_argtuple_error;
|
|
5094
5094
|
}
|
|
5095
5095
|
const Py_ssize_t kwd_pos_args = __pyx_nargs;
|
|
5096
|
-
if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqconc", 0) < 0) __PYX_ERR(0,
|
|
5096
|
+
if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqconc", 0) < 0) __PYX_ERR(0, 22, __pyx_L3_error)
|
|
5097
5097
|
if (!values[1]) values[1] = __Pyx_NewRef(((PyObject*)((PyObject*)__pyx_mstate_global->__pyx_kp_u__2)));
|
|
5098
5098
|
for (Py_ssize_t i = __pyx_nargs; i < 1; i++) {
|
|
5099
|
-
if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqconc", 0, 1, 2, i); __PYX_ERR(0,
|
|
5099
|
+
if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqconc", 0, 1, 2, i); __PYX_ERR(0, 22, __pyx_L3_error) }
|
|
5100
5100
|
}
|
|
5101
5101
|
} else {
|
|
5102
5102
|
switch (__pyx_nargs) {
|
|
5103
5103
|
case 2:
|
|
5104
5104
|
values[1] = __Pyx_ArgRef_FASTCALL(__pyx_args, 1);
|
|
5105
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[1])) __PYX_ERR(0,
|
|
5105
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[1])) __PYX_ERR(0, 22, __pyx_L3_error)
|
|
5106
5106
|
CYTHON_FALLTHROUGH;
|
|
5107
5107
|
case 1:
|
|
5108
5108
|
values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
|
|
5109
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0,
|
|
5109
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 22, __pyx_L3_error)
|
|
5110
5110
|
break;
|
|
5111
5111
|
default: goto __pyx_L5_argtuple_error;
|
|
5112
5112
|
}
|
|
@@ -5117,7 +5117,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
5117
5117
|
}
|
|
5118
5118
|
goto __pyx_L6_skip;
|
|
5119
5119
|
__pyx_L5_argtuple_error:;
|
|
5120
|
-
__Pyx_RaiseArgtupleInvalid("seqconc", 0, 1, 2, __pyx_nargs); __PYX_ERR(0,
|
|
5120
|
+
__Pyx_RaiseArgtupleInvalid("seqconc", 0, 1, 2, __pyx_nargs); __PYX_ERR(0, 22, __pyx_L3_error)
|
|
5121
5121
|
__pyx_L6_skip:;
|
|
5122
5122
|
goto __pyx_L4_argument_unpacking_done;
|
|
5123
5123
|
__pyx_L3_error:;
|
|
@@ -5128,8 +5128,8 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
5128
5128
|
__Pyx_RefNannyFinishContext();
|
|
5129
5129
|
return NULL;
|
|
5130
5130
|
__pyx_L4_argument_unpacking_done:;
|
|
5131
|
-
if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_data), __pyx_mstate_global->__pyx_ptype_5numpy_ndarray, 1, "data", 0))) __PYX_ERR(0,
|
|
5132
|
-
if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_sep), (&PyUnicode_Type), 1, "sep", 1))) __PYX_ERR(0,
|
|
5131
|
+
if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_data), __pyx_mstate_global->__pyx_ptype_5numpy_ndarray, 1, "data", 0))) __PYX_ERR(0, 22, __pyx_L1_error)
|
|
5132
|
+
if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_sep), (&PyUnicode_Type), 1, "sep", 1))) __PYX_ERR(0, 22, __pyx_L1_error)
|
|
5133
5133
|
__pyx_r = __pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seqconc(__pyx_self, __pyx_v_data, __pyx_v_sep);
|
|
5134
5134
|
|
|
5135
5135
|
/* function exit code */
|
|
@@ -5175,11 +5175,11 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5175
5175
|
__pyx_pybuffernd_data.rcbuffer = &__pyx_pybuffer_data;
|
|
5176
5176
|
{
|
|
5177
5177
|
__Pyx_BufFmt_StackElem __pyx_stack[1];
|
|
5178
|
-
if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_data.rcbuffer->pybuffer, (PyObject*)__pyx_v_data, &__Pyx_TypeInfo_nn_int32_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0,
|
|
5178
|
+
if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_data.rcbuffer->pybuffer, (PyObject*)__pyx_v_data, &__Pyx_TypeInfo_nn_int32_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 22, __pyx_L1_error)
|
|
5179
5179
|
}
|
|
5180
5180
|
__pyx_pybuffernd_data.diminfo[0].strides = __pyx_pybuffernd_data.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_data.diminfo[0].shape = __pyx_pybuffernd_data.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_data.diminfo[1].strides = __pyx_pybuffernd_data.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_data.diminfo[1].shape = __pyx_pybuffernd_data.rcbuffer->pybuffer.shape[1];
|
|
5181
5181
|
|
|
5182
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5182
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":23
|
|
5183
5183
|
*
|
|
5184
5184
|
* def seqconc(cnp.ndarray[int32_t, ndim=2] data, str sep="-"):
|
|
5185
5185
|
* if data.ndim == 1: # <<<<<<<<<<<<<<
|
|
@@ -5189,7 +5189,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5189
5189
|
__pyx_t_1 = (__pyx_f_5numpy_7ndarray_4ndim_ndim(((PyArrayObject *)__pyx_v_data)) == 1);
|
|
5190
5190
|
if (__pyx_t_1) {
|
|
5191
5191
|
|
|
5192
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5192
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":24
|
|
5193
5193
|
* def seqconc(cnp.ndarray[int32_t, ndim=2] data, str sep="-"):
|
|
5194
5194
|
* if data.ndim == 1:
|
|
5195
5195
|
* return sconc_np(data, sep) # <<<<<<<<<<<<<<
|
|
@@ -5197,13 +5197,13 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5197
5197
|
* return np.array([sconc_np(row, sep) for row in data])
|
|
5198
5198
|
*/
|
|
5199
5199
|
__Pyx_XDECREF(__pyx_r);
|
|
5200
|
-
__pyx_t_2 = __pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_sconc_np(((PyArrayObject *)__pyx_v_data), __pyx_v_sep); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
5200
|
+
__pyx_t_2 = __pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_sconc_np(((PyArrayObject *)__pyx_v_data), __pyx_v_sep); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 24, __pyx_L1_error)
|
|
5201
5201
|
__Pyx_GOTREF(__pyx_t_2);
|
|
5202
5202
|
__pyx_r = __pyx_t_2;
|
|
5203
5203
|
__pyx_t_2 = 0;
|
|
5204
5204
|
goto __pyx_L0;
|
|
5205
5205
|
|
|
5206
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5206
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":23
|
|
5207
5207
|
*
|
|
5208
5208
|
* def seqconc(cnp.ndarray[int32_t, ndim=2] data, str sep="-"):
|
|
5209
5209
|
* if data.ndim == 1: # <<<<<<<<<<<<<<
|
|
@@ -5212,7 +5212,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5212
5212
|
*/
|
|
5213
5213
|
}
|
|
5214
5214
|
|
|
5215
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5215
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":25
|
|
5216
5216
|
* if data.ndim == 1:
|
|
5217
5217
|
* return sconc_np(data, sep)
|
|
5218
5218
|
* elif data.ndim == 2: # <<<<<<<<<<<<<<
|
|
@@ -5222,7 +5222,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5222
5222
|
__pyx_t_1 = (__pyx_f_5numpy_7ndarray_4ndim_ndim(((PyArrayObject *)__pyx_v_data)) == 2);
|
|
5223
5223
|
if (likely(__pyx_t_1)) {
|
|
5224
5224
|
|
|
5225
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5225
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":26
|
|
5226
5226
|
* return sconc_np(data, sep)
|
|
5227
5227
|
* elif data.ndim == 2:
|
|
5228
5228
|
* return np.array([sconc_np(row, sep) for row in data]) # <<<<<<<<<<<<<<
|
|
@@ -5231,22 +5231,22 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5231
5231
|
*/
|
|
5232
5232
|
__Pyx_XDECREF(__pyx_r);
|
|
5233
5233
|
__pyx_t_3 = NULL;
|
|
5234
|
-
__Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
|
|
5234
|
+
__Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 26, __pyx_L1_error)
|
|
5235
5235
|
__Pyx_GOTREF(__pyx_t_4);
|
|
5236
|
-
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_mstate_global->__pyx_n_u_array); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
|
|
5236
|
+
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_mstate_global->__pyx_n_u_array); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 26, __pyx_L1_error)
|
|
5237
5237
|
__Pyx_GOTREF(__pyx_t_5);
|
|
5238
5238
|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
5239
5239
|
{ /* enter inner scope */
|
|
5240
|
-
__pyx_t_4 = PyList_New(0); if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
|
|
5240
|
+
__pyx_t_4 = PyList_New(0); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
5241
5241
|
__Pyx_GOTREF(__pyx_t_4);
|
|
5242
5242
|
if (likely(PyList_CheckExact(((PyObject *)__pyx_v_data))) || PyTuple_CheckExact(((PyObject *)__pyx_v_data))) {
|
|
5243
5243
|
__pyx_t_6 = ((PyObject *)__pyx_v_data); __Pyx_INCREF(__pyx_t_6);
|
|
5244
5244
|
__pyx_t_7 = 0;
|
|
5245
5245
|
__pyx_t_8 = NULL;
|
|
5246
5246
|
} else {
|
|
5247
|
-
__pyx_t_7 = -1; __pyx_t_6 = PyObject_GetIter(((PyObject *)__pyx_v_data)); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
|
|
5247
|
+
__pyx_t_7 = -1; __pyx_t_6 = PyObject_GetIter(((PyObject *)__pyx_v_data)); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
5248
5248
|
__Pyx_GOTREF(__pyx_t_6);
|
|
5249
|
-
__pyx_t_8 = (CYTHON_COMPILING_IN_LIMITED_API) ? PyIter_Next : __Pyx_PyObject_GetIterNextFunc(__pyx_t_6); if (unlikely(!__pyx_t_8)) __PYX_ERR(0,
|
|
5249
|
+
__pyx_t_8 = (CYTHON_COMPILING_IN_LIMITED_API) ? PyIter_Next : __Pyx_PyObject_GetIterNextFunc(__pyx_t_6); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
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5250
|
}
|
|
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5251
|
for (;;) {
|
|
5252
5252
|
if (likely(!__pyx_t_8)) {
|
|
@@ -5254,7 +5254,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5254
5254
|
{
|
|
5255
5255
|
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_6);
|
|
5256
5256
|
#if !CYTHON_ASSUME_SAFE_SIZE
|
|
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|
-
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0,
|
|
5257
|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
5258
5258
|
#endif
|
|
5259
5259
|
if (__pyx_t_7 >= __pyx_temp) break;
|
|
5260
5260
|
}
|
|
@@ -5264,7 +5264,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5264
5264
|
{
|
|
5265
5265
|
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_6);
|
|
5266
5266
|
#if !CYTHON_ASSUME_SAFE_SIZE
|
|
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|
-
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0,
|
|
5267
|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
5268
5268
|
#endif
|
|
5269
5269
|
if (__pyx_t_7 >= __pyx_temp) break;
|
|
5270
5270
|
}
|
|
@@ -5275,13 +5275,13 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5275
5275
|
#endif
|
|
5276
5276
|
++__pyx_t_7;
|
|
5277
5277
|
}
|
|
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|
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if (unlikely(!__pyx_t_9)) __PYX_ERR(0,
|
|
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|
+
if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
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5279
|
} else {
|
|
5280
5280
|
__pyx_t_9 = __pyx_t_8(__pyx_t_6);
|
|
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5281
|
if (unlikely(!__pyx_t_9)) {
|
|
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|
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|
|
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|
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|
|
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|
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if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) __PYX_ERR(0,
|
|
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|
+
if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
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5285
|
PyErr_Clear();
|
|
5286
5286
|
}
|
|
5287
5287
|
break;
|
|
@@ -5290,10 +5290,10 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5290
5290
|
__Pyx_GOTREF(__pyx_t_9);
|
|
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5291
|
__Pyx_XDECREF_SET(__pyx_7genexpr__pyx_v_row, __pyx_t_9);
|
|
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5292
|
__pyx_t_9 = 0;
|
|
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|
-
if (!(likely(((__pyx_7genexpr__pyx_v_row) == Py_None) || likely(__Pyx_TypeTest(__pyx_7genexpr__pyx_v_row, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0,
|
|
5294
|
-
__pyx_t_9 = __pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_sconc_np(((PyArrayObject *)__pyx_7genexpr__pyx_v_row), __pyx_v_sep); if (unlikely(!__pyx_t_9)) __PYX_ERR(0,
|
|
5293
|
+
if (!(likely(((__pyx_7genexpr__pyx_v_row) == Py_None) || likely(__Pyx_TypeTest(__pyx_7genexpr__pyx_v_row, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
5294
|
+
__pyx_t_9 = __pyx_f_8sequenzo_22dissimilarity_measures_5utils_7seqconc_sconc_np(((PyArrayObject *)__pyx_7genexpr__pyx_v_row), __pyx_v_sep); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
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5295
|
__Pyx_GOTREF(__pyx_t_9);
|
|
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|
-
if (unlikely(__Pyx_ListComp_Append(__pyx_t_4, (PyObject*)__pyx_t_9))) __PYX_ERR(0,
|
|
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|
+
if (unlikely(__Pyx_ListComp_Append(__pyx_t_4, (PyObject*)__pyx_t_9))) __PYX_ERR(0, 26, __pyx_L6_error)
|
|
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5297
|
__Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
|
|
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5298
|
}
|
|
5299
5299
|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
|
@@ -5322,14 +5322,14 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5322
5322
|
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
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|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
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|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
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|
-
if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
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|
+
if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 26, __pyx_L1_error)
|
|
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5326
|
__Pyx_GOTREF(__pyx_t_2);
|
|
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5327
|
}
|
|
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5328
|
__pyx_r = __pyx_t_2;
|
|
5329
5329
|
__pyx_t_2 = 0;
|
|
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5330
|
goto __pyx_L0;
|
|
5331
5331
|
|
|
5332
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5332
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":25
|
|
5333
5333
|
* if data.ndim == 1:
|
|
5334
5334
|
* return sconc_np(data, sep)
|
|
5335
5335
|
* elif data.ndim == 2: # <<<<<<<<<<<<<<
|
|
@@ -5338,7 +5338,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5338
5338
|
*/
|
|
5339
5339
|
}
|
|
5340
5340
|
|
|
5341
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5341
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":28
|
|
5342
5342
|
* return np.array([sconc_np(row, sep) for row in data])
|
|
5343
5343
|
* else:
|
|
5344
5344
|
* raise ValueError("Only 1D and 2D arrays are supported.") # <<<<<<<<<<<<<<
|
|
@@ -5353,15 +5353,15 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_7seqconc_seq
|
|
|
5353
5353
|
__pyx_t_2 = __Pyx_PyObject_FastCall(__pyx_t_4, __pyx_callargs+__pyx_t_10, (2-__pyx_t_10) | (__pyx_t_10*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET));
|
|
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5354
|
__Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
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|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
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|
-
if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
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|
+
if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 28, __pyx_L1_error)
|
|
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|
__Pyx_GOTREF(__pyx_t_2);
|
|
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5358
|
}
|
|
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5359
|
__Pyx_Raise(__pyx_t_2, 0, 0, 0);
|
|
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5360
|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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|
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|
-
__PYX_ERR(0,
|
|
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|
+
__PYX_ERR(0, 28, __pyx_L1_error)
|
|
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5362
|
}
|
|
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5363
|
|
|
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|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5364
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":22
|
|
5365
5365
|
* return result.decode('utf-8')
|
|
5366
5366
|
*
|
|
5367
5367
|
* def seqconc(cnp.ndarray[int32_t, ndim=2] data, str sep="-"): # <<<<<<<<<<<<<<
|
|
@@ -5917,33 +5917,34 @@ __Pyx_RefNannySetupContext("PyInit_seqconc", 0);
|
|
|
5917
5917
|
(void)__Pyx_modinit_function_import_code(__pyx_mstate);
|
|
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5918
|
/*--- Execution code ---*/
|
|
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5919
|
|
|
5920
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5920
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":2
|
|
5921
|
+
* # cython: np_import_array=True
|
|
5921
5922
|
* import numpy as np # <<<<<<<<<<<<<<
|
|
5922
5923
|
* cimport numpy as cnp
|
|
5923
|
-
*
|
|
5924
|
+
*
|
|
5924
5925
|
*/
|
|
5925
|
-
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
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|
+
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 2, __pyx_L1_error)
|
|
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5927
|
__Pyx_GOTREF(__pyx_t_2);
|
|
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|
-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0,
|
|
5928
|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0, 2, __pyx_L1_error)
|
|
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|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
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5930
|
|
|
5930
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
5931
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":22
|
|
5931
5932
|
* return result.decode('utf-8')
|
|
5932
5933
|
*
|
|
5933
5934
|
* def seqconc(cnp.ndarray[int32_t, ndim=2] data, str sep="-"): # <<<<<<<<<<<<<<
|
|
5934
5935
|
* if data.ndim == 1:
|
|
5935
5936
|
* return sconc_np(data, sep)
|
|
5936
5937
|
*/
|
|
5937
|
-
__pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_7seqconc_1seqconc, 0, __pyx_mstate_global->__pyx_n_u_seqconc, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0])); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
5938
|
+
__pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_7seqconc_1seqconc, 0, __pyx_mstate_global->__pyx_n_u_seqconc, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0])); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 22, __pyx_L1_error)
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|
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5939
|
__Pyx_GOTREF(__pyx_t_2);
|
|
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5940
|
__Pyx_CyFunction_SetDefaultsTuple(__pyx_t_2, __pyx_mstate_global->__pyx_tuple[0]);
|
|
5940
|
-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqconc, __pyx_t_2) < 0) __PYX_ERR(0,
|
|
5941
|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqconc, __pyx_t_2) < 0) __PYX_ERR(0, 22, __pyx_L1_error)
|
|
5941
5942
|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
5942
5943
|
|
|
5943
5944
|
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":1
|
|
5944
|
-
*
|
|
5945
|
+
* # cython: np_import_array=True # <<<<<<<<<<<<<<
|
|
5946
|
+
* import numpy as np
|
|
5945
5947
|
* cimport numpy as cnp
|
|
5946
|
-
* from libc.stdint cimport int32_t
|
|
5947
5948
|
*/
|
|
5948
5949
|
__pyx_t_2 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
5949
5950
|
__Pyx_GOTREF(__pyx_t_2);
|
|
@@ -6050,8 +6051,8 @@ static int __Pyx_InitStrings(__Pyx_StringTabEntry const *t, PyObject **target, c
|
|
|
6050
6051
|
|
|
6051
6052
|
static int __Pyx_InitCachedBuiltins(__pyx_mstatetype *__pyx_mstate) {
|
|
6052
6053
|
CYTHON_UNUSED_VAR(__pyx_mstate);
|
|
6053
|
-
__pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_range); if (!__pyx_builtin_range) __PYX_ERR(0,
|
|
6054
|
-
__pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(0,
|
|
6054
|
+
__pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_range); if (!__pyx_builtin_range) __PYX_ERR(0, 13, __pyx_L1_error)
|
|
6055
|
+
__pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(0, 28, __pyx_L1_error)
|
|
6055
6056
|
__pyx_builtin_ImportError = __Pyx_GetBuiltinName(__pyx_mstate->__pyx_n_u_ImportError); if (!__pyx_builtin_ImportError) __PYX_ERR(1, 1010, __pyx_L1_error)
|
|
6056
6057
|
return 0;
|
|
6057
6058
|
__pyx_L1_error:;
|
|
@@ -6064,14 +6065,14 @@ static int __Pyx_InitCachedConstants(__pyx_mstatetype *__pyx_mstate) {
|
|
|
6064
6065
|
CYTHON_UNUSED_VAR(__pyx_mstate);
|
|
6065
6066
|
__Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);
|
|
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6067
|
|
|
6067
|
-
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":
|
|
6068
|
+
/* "sequenzo/dissimilarity_measures/utils/seqconc.pyx":22
|
|
6068
6069
|
* return result.decode('utf-8')
|
|
6069
6070
|
*
|
|
6070
6071
|
* def seqconc(cnp.ndarray[int32_t, ndim=2] data, str sep="-"): # <<<<<<<<<<<<<<
|
|
6071
6072
|
* if data.ndim == 1:
|
|
6072
6073
|
* return sconc_np(data, sep)
|
|
6073
6074
|
*/
|
|
6074
|
-
__pyx_mstate_global->__pyx_tuple[0] = PyTuple_Pack(1, ((PyObject*)__pyx_mstate_global->__pyx_kp_u__2)); if (unlikely(!__pyx_mstate_global->__pyx_tuple[0])) __PYX_ERR(0,
|
|
6075
|
+
__pyx_mstate_global->__pyx_tuple[0] = PyTuple_Pack(1, ((PyObject*)__pyx_mstate_global->__pyx_kp_u__2)); if (unlikely(!__pyx_mstate_global->__pyx_tuple[0])) __PYX_ERR(0, 22, __pyx_L1_error)
|
|
6075
6076
|
__Pyx_GOTREF(__pyx_mstate_global->__pyx_tuple[0]);
|
|
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6077
|
__Pyx_GIVEREF(__pyx_mstate_global->__pyx_tuple[0]);
|
|
6077
6078
|
__Pyx_RefNannyFinishContext();
|
|
@@ -6117,7 +6118,7 @@ static int __Pyx_CreateCodeObjects(__pyx_mstatetype *__pyx_mstate) {
|
|
|
6117
6118
|
PyObject* tuple_dedup_map = PyDict_New();
|
|
6118
6119
|
if (unlikely(!tuple_dedup_map)) return -1;
|
|
6119
6120
|
{
|
|
6120
|
-
const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS),
|
|
6121
|
+
const __Pyx_PyCode_New_function_description descr = {2, 0, 0, 3, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 22, 70};
|
|
6121
6122
|
PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_data, __pyx_mstate->__pyx_n_u_sep, __pyx_mstate->__pyx_n_u_row};
|
|
6122
6123
|
__pyx_mstate_global->__pyx_codeobj_tab[0] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_sequenzo_dissimilarity_measures_2, __pyx_mstate->__pyx_n_u_seqconc, __pyx_k_q_t6_A_xq_a_V3a_r_q_uD_q_j, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[0])) goto bad;
|
|
6123
6124
|
}
|