PyPI - sequenzo - Versions diffs - 0.1.19__cp311-cp311-win_amd64.whl → 0.1.20__cp311-cp311-win_amd64.whl - Mend

sequenzo 0.1.19__cp311-cp311-win_amd64.whl → 0.1.20__cp311-cp311-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

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Files changed (25) hide show

sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd CHANGED Viewed

Binary file

sequenzo/multidomain/dat.py CHANGED Viewed

@@ -1,3 +1,11 @@
+'''
+Author: Yuqi Liang dawson1900@live.com
+Date: 2025-09-25 08:46:49
+LastEditors: Yuqi Liang dawson1900@live.com
+LastEditTime: 2025-10-07 20:38:10
+FilePath: /Sequenzo-main/sequenzo/multidomain/dat.py
+Description: 这是默认设置,请设置`customMade`, 打开koroFileHeader查看配置 进行设置: https://github.com/OBKoro1/koro1FileHeader/wiki/%E9%85%8D%E7%BD%AE
+'''
 """
 @Author  : Yuqi Liang 梁彧祺
 @File    : dat.py
@@ -60,11 +68,11 @@ if __name__ == '__main__':
     time_cols = [col for col in children_df.columns if col.startswith("age_")]
-    seq_left = SequenceData(data=left_df, time_type="age", time=time_cols, states=[0, 1],
+    seq_left = SequenceData(data=left_df, time=time_cols, states=[0, 1],
                             labels=["At home", "Left home"])
-    seq_child = SequenceData(data=children_df, time_type="age", time=time_cols, states=[0, 1],
+    seq_child = SequenceData(data=children_df, time=time_cols, states=[0, 1],
                              labels=["No child", "Child"])
-    seq_marr = SequenceData(data=married_df, time_type="age", time=time_cols, states=[0, 1],
+    seq_marr = SequenceData(data=married_df, time=time_cols, states=[0, 1],
                             labels=["Not married", "Married"])
     domains_seq_list = [seq_left, seq_child, seq_marr]

sequenzo/multidomain/idcd.py CHANGED Viewed

@@ -75,7 +75,6 @@ def _generate_combined_sequence_from_csv(csv_paths: List[str],
 def create_idcd_sequence_from_csvs(
     csv_paths: List[str],
     time_cols: List[str],
-    time_type: str = "year",
     id_col: str = "id",
     domain_state_labels: List[Dict] = None
 ) -> SequenceData:
@@ -86,7 +85,6 @@ def create_idcd_sequence_from_csvs(
     Parameters:
     - csv_paths: List of paths to domain CSVs
     - time_cols: List of time column names to use
-    - time_type: 'year' or 'age'
     - id_col: ID column name
     - domain_state_labels: List of dictionaries mapping raw state values to labels for each domain

sequenzo/multidomain/linked_polyad.py CHANGED Viewed

@@ -190,7 +190,6 @@ def linked_polyadic_sequence_analysis(seqlist: List[SequenceData],
             seq_shuffled = SequenceData(
                 data=shuffled,
                 time=merged_seqdata.time,
-                time_type=merged_seqdata.time_type,
                 states=merged_seqdata.states,
                 labels=merged_seqdata.labels,
                 id_col="__id__"

{sequenzo-0.1.19.dist-info → sequenzo-0.1.20.dist-info}/METADATA RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: sequenzo
-Version: 0.1.19
+Version: 0.1.20
 Summary: A fast, scalable and intuitive Python package for social sequence analysis.
 Author-email: Yuqi Liang <yuqi.liang.1900@gmail.com>, Xinyi Li <1836724126@qq.com>, Jan Heinrich Ernst Meyerhoff-Liang <jan.meyerhoff1@gmail.com>
 License: BSD 3-Clause License
@@ -181,6 +181,34 @@ If you have some issues with the installation, it might because you have both Py
 pip3 install sequenzo
 ```
+### ⚠️ Having Installation or Import Issues?
+**Error:** `ImportError: numpy.core.multiarray failed to import`
+**Most likely cause:** NumPy version mismatch (you have NumPy 1.x, but need 2.x)
+**Quick Fix** (copy-paste these commands):
+```bash
+# Check your NumPy version first
+python -c "import numpy; print(f'NumPy: {numpy.__version__}')"
+# If you see 1.x.x, upgrade to 2.x:
+pip install --upgrade "numpy>=2.0.0"
+pip uninstall sequenzo -y
+pip install --no-cache-dir sequenzo
+```
+📖 **Still having issues?**
+1. Run our diagnostic tool to identify the problem:
+   ```bash
+   curl -O https://raw.githubusercontent.com/Liang-Team/Sequenzo/main/diagnose.py
+   python diagnose.py
+   ```
+2. See our detailed guides:
+   - **[QUICK_FIX.md](QUICK_FIX.md)** - Simple step-by-step solutions
+   - **[TROUBLESHOOTING.md](TROUBLESHOOTING.md)** - Comprehensive troubleshooting
+   - **[docs/WHY_IMPORT_FAILS.md](docs/WHY_IMPORT_FAILS.md)** - Technical explanation
 ### Optional R Integration
 Sequenzo now checks the system environment variables before running ward.D hierarchical clustering.

{sequenzo-0.1.19.dist-info → sequenzo-0.1.20.dist-info}/RECORD RENAMED Viewed

@@ -8,14 +8,14 @@ sequenzo/big_data/clara/visualization.py,sha256=EpSmtAxRHVqcXlcXvSGiUuBjEETR7zK_
 sequenzo/big_data/clara/utils/__init__.py,sha256=2_o1tz8HFZVKFy8w8oJWdWlVKtwGjGY3z4PQylHKjt0,726
 sequenzo/big_data/clara/utils/aggregatecases.py,sha256=ul97pbnRlwxbFbX_0M4j-Bkyxkp7zMAKatSo4eanO24,2899
 sequenzo/big_data/clara/utils/davies_bouldin.py,sha256=4Y6VFjqopG3CaftQ8tDxQPjxxupJ6Hgv-yTXwCvgN7w,3037
-sequenzo/big_data/clara/utils/get_weighted_diss.c,sha256=aDO8AQCp7P9dcG46-iDzNTDtxGXoidzpCCo3ON5yKwE,482697
-sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd,sha256=xQr7v7yR8NoiG4bc_q94p-Q5mBaQl0dyopOCtL2XFgw,53248
+sequenzo/big_data/clara/utils/get_weighted_diss.c,sha256=bhpzlR-GCDXPuIsjYqxOg3PvyVULhzUL-LScauI9RBM,482697
+sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd,sha256=HPhzJVJeTheZUlYlEW1gSbRfK3WPcC6fsyrcSrjIPAQ,53248
 sequenzo/big_data/clara/utils/get_weighted_diss.pyx,sha256=UYR-u8MDQEuWID3inKhSpBsuxu7qTFmEwLrjNPBMmUw,430
 sequenzo/big_data/clara/utils/wfcmdd.py,sha256=-1H6CbTteTW-CeuQ_ehVDhnKH3ozcCkUobxoCSRIpYg,7074
 sequenzo/clustering/KMedoids.py,sha256=asktGP0KKgP4TsOH4bSYEWfE8yY5b9BfKa1d54KzaXI,7147
 sequenzo/clustering/__init__.py,sha256=duEY0Hq0-7Kc_lv0uFDK3D8IEXby-7Z0Rjff0EgO0KM,875
-sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd,sha256=Gk1GdtJW22fJf4taPsVmsi9VS1Zw3S45enev0OwheJ8,249344
-sequenzo/clustering/hierarchical_clustering.py,sha256=b0ZkWoj9PGPqzVoRUaOIIM6AC-Udi2_Fcgi7AzAWE4c,61590
+sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd,sha256=mmynOFs7K5o_JrVonzRB4p203SGXYAMc8weR_Wip5N0,249344
+sequenzo/clustering/hierarchical_clustering.py,sha256=3O2ipqqPMQ0O74H2YpLc2mmldWNFtiQI7Bs16hyXoDk,61572
 sequenzo/clustering/src/KMedoid.cpp,sha256=Bb4LaRes004T9vyCmUknRS0NUaNr4ZoEpWvtkYGq-jw,9299
 sequenzo/clustering/src/PAM.cpp,sha256=UFXdTy1wMWheYa-fUoi8ASQPmn0Ew-AO7fqVQVxn_E8,8357
 sequenzo/clustering/src/PAMonce.cpp,sha256=C9HqGBRenmF2tnQofALjjU1As02dTw2oqEnuvdhoJIk,7943
@@ -47,9 +47,9 @@ sequenzo/datasets/polyadic_samplep1.csv,sha256=-2HvKSmevfqe1rWFVJlbnjousEgJRU_PH
 sequenzo/datasets/polyadic_seqc1.csv,sha256=ydZ-U8NTszR4lNBN4hhsH_dHfq0w5VZSMM7t9C5Uado,7028
 sequenzo/datasets/polyadic_seqp1.csv,sha256=sydXCR0JBKJlbMxJyGa46cic9XQstUpYFOtHaLmkp_0,7681
 sequenzo/dissimilarity_measures/__init__.py,sha256=qkWAQ1sBpS2aayO-FSA8Zha7rQ_vjs0_KIHEB60bVg4,958
-sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd,sha256=-RGYkkl94mQj3Buh9tcwOu03C3sJSSylCO94FT7yVzk,219136
-sequenzo/dissimilarity_measures/get_distance_matrix.py,sha256=6C8x06IDZ3wZeEr-JN-Sce5rxMQLXXoyJNrlsQXn8Pk,29903
-sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py,sha256=A2ohhpJw-dznmjfsjctVnO5BOzajRBm3Ffj-oPYEvJ4,9551
+sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd,sha256=hIZiLtoKELTRpje5S7ErDdSVzFo3Et5BbZN_z6MDjCk,219136
+sequenzo/dissimilarity_measures/get_distance_matrix.py,sha256=dNZtqg0aN3vAz5r1sTgjS3jwLAzcXGbG4MGWeBEvhag,29886
+sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py,sha256=Yed91VyNHkzeYxIduCTVF8hmJiAmltPH4R0lhvKQoKk,9533
 sequenzo/dissimilarity_measures/src/DHDdistance.cpp,sha256=RbWbSaELxlJiw5ST_JaD-wPx_sD7PGV2VdK4qEhOcxE,4714
 sequenzo/dissimilarity_measures/src/LCPdistance.cpp,sha256=VCqRm_mbI2IOm6KiO7SACHDOpZXBTkDdyr1Fo39zJVE,3231
 sequenzo/dissimilarity_measures/src/OMdistance.cpp,sha256=0HxjF4VFXkCtrV2zV7Kb_URVMWrjgt_W-4ugf1O7cDo,8726
@@ -212,28 +212,28 @@ sequenzo/dissimilarity_measures/src/xsimd/test/doc/writing_vectorized_code.cpp,s
 sequenzo/dissimilarity_measures/src/xsimd/test/test_wasm/test_wasm_playwright.py,sha256=9kcOfaW5dDqXs9AJBgmHoUx80tCHdGJ3d2Elr9dOkUo,3980
 sequenzo/dissimilarity_measures/utils/__init__.py,sha256=aZMQJGgJq4GsL1x-pQPLmL7KrJ78cHMH46GVmVE8pJ0,407
 sequenzo/dissimilarity_measures/utils/get_LCP_length_for_2_seq.py,sha256=bJjbEQcjENSAdLv2IMRUWJC4avldwCfHrtSEnlDEACY,1470
-sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c,sha256=h7yIIoHJfDSXcJQGOm13mH2kBQiqfpJqK5UarYbk2aI,597297
-sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd,sha256=0VSlCdyzsDAB8yVlYeVu--i5I1b45XwOL4GczzRvYok,73728
+sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c,sha256=JOkrF6ejULlQSzm7pgAOgUA3U-4vC3BwVUO438ojsP8,597297
+sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd,sha256=1HDyrW6GBhuSLfc8qOKELM2_TNenAOxFZsHUZ_nQgjg,73728
 sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.pyx,sha256=pwImh8jgNcbLLb0y1uhYAYNwXP93JPIh-DQ5frVjZUE,3216
-sequenzo/dissimilarity_measures/utils/seqconc.c,sha256=C2KdO8fsyXUV2-yLVA8lVgVVCB5kP83-rfu4XkphcZE,504865
-sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd,sha256=_q3DNQbSNysPRUrdycf0zniT70UuIBnYdwpVCkZ_sPg,57344
+sequenzo/dissimilarity_measures/utils/seqconc.c,sha256=m2w_RhTonB3ygysEn6tPKYlL-WKvNzSdYzdASPvrpsc,504865
+sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd,sha256=Kl052AoyBLNYsMeJHw9rFnxD52EBW1TK6tI7MlrUUVk,57344
 sequenzo/dissimilarity_measures/utils/seqconc.pyx,sha256=7X8jv1kXq9o2pCnBNu5X_NZ0aMpWtxhhqnMsUJzqANo,770
-sequenzo/dissimilarity_measures/utils/seqdss.c,sha256=i6U4jHsE1wdWH_c4ZGQYfcL8lEC73KszsJ8qXM-UxVY,618990
-sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd,sha256=eTxjUlQ4xbwui2PAqWjALBCXlPuARoYeEgCvhSkO58Y,80896
+sequenzo/dissimilarity_measures/utils/seqdss.c,sha256=8Uq9etsUC8iHzgplB6n9eM2iAKRlzRHo9Uknwdi8o44,618990
+sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd,sha256=bheYoWUwndRgPkeMmhix7wIcAx_vOenvIxyQlLhT9TM,80896
 sequenzo/dissimilarity_measures/utils/seqdss.pyx,sha256=THl9-bw63NqgXAv9_OhlB6DF92A0moszCoA32XyyA0Q,1232
-sequenzo/dissimilarity_measures/utils/seqdur.c,sha256=d9cPQb68CgVTgvvwVTizUV_U48tFTQqp8I0Avd4ZdvE,541287
-sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd,sha256=ZdIk_q_eadoAu_-dZ10SELisM4ap3e1rVA2FBep4ygI,67072
+sequenzo/dissimilarity_measures/utils/seqdur.c,sha256=Gkkj4ycd3d0Zxrvjav34SrviW1PDuWu3MEr7iKuVZZw,541287
+sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd,sha256=wxxdzf_XkPmknUypru_IJjyM2cEbvq2VNVbFH3HrHyQ,67072
 sequenzo/dissimilarity_measures/utils/seqdur.pyx,sha256=RyBqjdO8SdiCYg7cScdT6uEWPjYX_e7-KUrlQkRkBC0,1288
-sequenzo/dissimilarity_measures/utils/seqlength.c,sha256=6C3xsApHl64DxJB7fWtx5_EYGoHkxrww5LtqM1biWF8,492458
-sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd,sha256=R94AnBfPRCThV3nZGzNI3JgL0iGtmVpopPnkC0I1b0E,56832
+sequenzo/dissimilarity_measures/utils/seqlength.c,sha256=XI9Fp8WO0tXQP1UVemQmmXNC_OwVADURYR8ftNgsGqs,492458
+sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd,sha256=qRHqAe93bQ7ZY2VsFcumhg-5LF2C_hq36RFRDHIhK4Q,56832
 sequenzo/dissimilarity_measures/utils/seqlength.pyx,sha256=y-792z6X1L4zychHJj5IQVHOfM5JibQ_ITFnkYHJO3c,564
 sequenzo/multidomain/__init__.py,sha256=bVnbkJXuXj8y5lHreRBQnL1JFcrmlsz2TSt-qFfmWm8,734
 sequenzo/multidomain/association_between_domains.py,sha256=V4I_ILAAwf3cfz2i0HdLF8otAqPtF2LfjcCKo1IkfHA,10855
 sequenzo/multidomain/cat.py,sha256=7QqdEjZSiqDZnXGOWgkOoeRHg0USVAUKPlzXecJeMFQ,18022
 sequenzo/multidomain/combt.py,sha256=aE1OsCE5huJI6VqInBpBjT6WjAIZlgFHFtUwSZt9XLU,22079
-sequenzo/multidomain/dat.py,sha256=OwSSi9AiuWBF4LP_HOi79MRngvRCqe4o-eahWrrKTPw,3155
-sequenzo/multidomain/idcd.py,sha256=EGY__QnS6WEE07zaqWeKaFbFiZPzxALmYV_5shJ6uTA,4588
-sequenzo/multidomain/linked_polyad.py,sha256=2G_WfKt_o_pdqg68bmQis738h76GiBVjHusnUNAys64,13666
+sequenzo/multidomain/dat.py,sha256=ljhc3kbAl8t8tpNh06eu4lAbR36PFUQCkxXBBtx81lo,3477
+sequenzo/multidomain/idcd.py,sha256=kKSGJfL_c0pBPbbDdR1BJ08GIIErGFj5ft7ieHyhnT8,4526
+sequenzo/multidomain/linked_polyad.py,sha256=l2ysDmhKeuHXq2xMVGb-WOq7AStnLd99NZ363gmh3lA,13614
 sequenzo/prefix_tree/__init__.py,sha256=YxMzr5UwM22DmpMDMAmKYI-vjhikDI8Gft_cJ9h1gYo,1126
 sequenzo/prefix_tree/individual_level_indicators.py,sha256=9JPINoPU50UGh9-D2QOAr7GQsxAkZ6qDmhKQtVwvZsU,52788
 sequenzo/prefix_tree/system_level_indicators.py,sha256=tGnzRRqwzJbGv-vjOMAzdh6arN6QJkdsybe0Yif57ug,17507
@@ -265,8 +265,8 @@ sequenzo/visualization/utils/utils.py,sha256=9Z1L3PVL-Z41fvCW4tLJ5DaUVHO6C6PAJYl
 sequenzo/with_event_history_analysis/__init__.py,sha256=B2EZhtJ7NEzO8piDwfSbh0l87fQ0ZuesPO5GNJEXKPo,730
 sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py,sha256=wtsKnq-82bJhRH78cy49Nzo3yGJKoFD4RckoZ7D-SS8,37301
 sequenzo/with_event_history_analysis/sequence_history_analysis.py,sha256=vv5y2u9cpzhmNJX_fSYgLmFOncPvB7DVhWujljII1vA,10902
-sequenzo-0.1.19.dist-info/licenses/LICENSE,sha256=URRMyLHVeGF2kyDLC1xbRKBBIjDHJyWqF4nWpzfBX10,1497
-sequenzo-0.1.19.dist-info/METADATA,sha256=PLT7tGD0jESm9jLzLHIMZJGFybMuNK7E1_VuH6hRxEk,14466
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-sequenzo-0.1.19.dist-info/top_level.txt,sha256=yM8eczbPzqB1bRHMYLptvjjQ3p5tYhY6VjgWHUIi9vw,9
-sequenzo-0.1.19.dist-info/RECORD,,
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+sequenzo-0.1.20.dist-info/RECORD,,

{sequenzo-0.1.19.dist-info → sequenzo-0.1.20.dist-info}/WHEEL RENAMED Viewed

File without changes

{sequenzo-0.1.19.dist-info → sequenzo-0.1.20.dist-info}/licenses/LICENSE RENAMED Viewed

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{sequenzo-0.1.19.dist-info → sequenzo-0.1.20.dist-info}/top_level.txt RENAMED Viewed

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